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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 3009 fasta sequence
[CGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACCAAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCCGCTGCCAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTGAGGTCCTTGTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGCAAGGTTAACCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACTGGCTCAGTTGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCAAATGGTTCCATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGGCACAGATCAAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGTTCTTCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATATAAGGGTCACAGAGGAGCAATTAGAATAATCAGATTTGCACCTGATGGACGATGGGTTGTCACCGGCGGAGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACATGACTTCAAGTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTGCTTGCAACAGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTGATTGGTTCTGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGAAAAACCCTATTCTGTGGGTTAGACCAAAGCCTAAAGGTATTCTCTTGGGAGCCAGTAAGATGTCATGACGTTGTTGACATGGGATGGAGCAATTTGGCTGACCTTAGTATTTATGAAGGAAAACTCTTGGGATGCTCCTACCACGAATGCCGAGTTGGTGTTTGGGTTGCTGATATATCGCTCATTGGGCCCTATGCTCTTGGTGTTTTGCCCAAAGCAAATTTCTTTGCTGAGCTGGTACATTCTTTAGACGACAATCCTTCGAAAACGATTGATACCACTGCCAAGTCCATTCCTGCTCTAGCAACGACACATCCAAAAAATCTGTACAAGGTCAAGGAAACAGGGACTGCTGAAAGTGGAATTCGTGGCTCAAATTTGACTCCAGCAAGTATGGATAAAACCAAGAGAGATAAGAGTGGTGCAACTCCTCGAAGACCTGATTCTTCTTTCAAATCATCTATTCAGAGCTCTACTCCAATGAGGCGCATGAAAGCTGCTGATAGTCCATACACAAATAGAAAAACAGTGGAGCGCAATTTTGCACAGAGGGATGCCTCGCTAGCATCCCGTACGGGAACAGCTGATAATTCTTCAACTGTTAAAAAAGGCCATCTTGCTGAGTCAGTATCTGTAAAAGATATTTACACTACACCACAGACTGTTTCTGTGCCTGTCGTTATGCCTAGAGACATTTTAGAGGACAAAACAGCAGGCAGCATTAGTGGAGGAATCAGAGGGAGAGCTGCAGTTGCAGATGATTTCCATGCTCCTGTTCATTCAAGGAAACTTTCAGTTAATAGTTTTGTGGGTGATAGTGTTAACTCAACAAAATCCATGCTAACTGATCCTGATGTTTGCTCTGAGGGTTTCTCTGGCTTAAAATTCTCTTTTGGACTAACTCCATATTACAAGAAAGAAGAATATGATAATGTGGATAAAGTTGATAGTATGGATAAAGGTGATAATACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTTCAGTCAAATGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTCAGAGGAGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAGAGAGAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGATCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAATGGTATCAAAGGAGCGATTGCTGCAGTGGCAAAGTTGCCTGACAATGCTGTTCTAGCTGATGTTGTTAGTACTCTGAAGGGGAAACTTGATCTCTTCAACCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTACATGTGAGCTTGGCT-GTGCATAATCTGTAATTAACATTTGTTAC-ATGGACAGCCCCGGATGAGGGAGAAGCAAGTTCAAAAATGGTTGATGTCAGTTCAACGTGGTGATTCATTNTCNAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100949 [CGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACCAAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCCGCTGCCAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTGAGGTCCTTGTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGCAAGGTTAACCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACTGGCTCAGTTGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCAAATGGTTCCATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGGCACAGATCAAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGTTCTTCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATATAAGGGTCACAGAGGAGCAATTAGAATAATCAGATTTGCACCTGATGGACGATGGGTTGTCACCGGCGGAGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACATGACTTCAAGTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTGCTTGCAACAGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTGATTGGTTCTGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGAAAAACCCTATTCTGTGGGTTAGACCAAAGCCTAAAGGTATTCTCTTGGGAGCCAGTAAGATGTCATGACGTTGTTGACATGGGATGGAGCAATTTGGCTGACCTTAGTATTTATGAAGGAAAACTCTTGGGATGCTCCTACCACGAATGCCGAGTTGGTGTTTGGGTTGCTGATATATCGCTCATTGGGCCCTATGCTCTTGGTGTTTTGCCCAAAGCAAATTTCTTTGCTGAGCTGGTACATTCTTTAGACGACAATCCTTCGAAAACGATTGATACCACTGCCAAGTCCATTCCTGCTCTAGCAACGACACATCCAAAAAATCTGTACAAGGTCAAGGAAACAGGGACTGCTGAAAGTGGAATTCGTGGCTCAAATTTGACTCCAGCAAGTATGGATAAAACCAAGAGAGATAAGAGTGGTGCAACTCCTCGAAGACCTGATTCTTCTTTCAAATCATCTATTCAGAGCTCTACTCCAATGAGGCGCATGAAAGCTGCTGATAGTCCATACACAAATAGAAAAACAGTGGAGCGCAATTTTGCACAGAGGGATGCCTCGCTAGCATCCCGTACGGGAACAGCTGATAATTCTTCAACTGTTAAAAAAGGCCATCTTGCTGAGTCAGTATCTGTAAAAGATATTTACACTACACCACAGACTGTTTCTGTGCCTGTCGTTATGCCTAGAGACATTTTAGAGGACAAAACAGCAGGCAGCATTAGTGGAGGAATCAGAGGGAGAGCTGCAGTTGCAGATGATTTCCATGCTCCTGTTCATTCAAGGAAACTTTCAGTTAATAGTTTTGTGGGTGATAGTGTTAACTCAACAAAATCCATGCTAACTGATCCTGATGTTTGCTCTGAGGGTTTCTCTGGCTTAAAATTCTCTTTTGGACTAACTCCATATTACAAGAAAGAAGAATATGATAATGTGGATAAAGTTGATAGTATGGATAAAGGTGATAATACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTTCAGTCAAATGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTCAGAGGAGTTGCTGTGCCATTAGGAAAAACATAGTCTCTTGTTGAGAGATGGGAAAAGAGAGAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGATCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAATGGTATCAAAGGAGCGATTGCTGCAGTGGCAAAGTTGCCTGACAATGCTGTTCTAGCTGATGTTGTTAGTACTCTGAAGGGGAAACTTGATCTCTTCAACCTAGACATTTTCTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTACATGTGAGCTTGGCT GTGCATAATCTGTAATTAACATTTGTTAC ATGGACAGCCCCGGATGAGGGAGAAGCAAGTTCAAAAATGGTTGATGTCAGTTCAAC ]
[+] EMBL CB657882 [ CGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTGAGGTCCTTGTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGCAAGGTTAACCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACTGGCTCAGTTGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCAAATGGTTCCATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGGCACAGATCAAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGTTCTTCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATATAAGGGTCACAGAGGAGCAATTAGAACAATCAGATTTACACCTGATGGACGATGGGTTGTCACCGGCGGAGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACATGACTTCAAGTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTGCTTGCAACAGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTGATTGGTTCTGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGAAAAACCCTATTCTGTGGGTTAGA ]
[+] EMBL AU181204 [ ACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTTCAGTCAAATGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTCAGAGGAGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAGAGAGAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGATCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAATGGTATCAAAGGAGCGATTGCTGCA ]
[+] EMBL C25994 [ ACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTCAGAGGAGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAGAGAGAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGATCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATAAATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAATGGTATCAAAGGAGCGATTGCTGCAGTGGCAAAGTTGCCTGACAATGCTGTTCTAGCTGATGTTGTTAGTACT ]
[+] EMBL OS1321866 [ AACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGNCA GCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCNTGTTGTACATGTGAGCTTGGCTNGTGCATAATCTGNAATTAACATTTGTTACAATGG ]
[+] EMBL AU174398 [ TGATTTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACCCAGTGAGAGTAGATAACTAGACATCATTNTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGNGTAGTCCCCTGTTGTACATGTGAGCTTGGCT GTGCATAATCTGTAATTAACATTTGTTAC ATGGACAGCCCCGGATGAGGGANAAGCAAGTTCAAAAATGGTTGATGTCAGTTCAACGTGGTGATTCATTNTCNAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence
[CGAAGGGGGAGAAAGGGAGGCGACAAAAACTCCACTCTCTCACTCCGGCACAGCACTCCCCCCACCCACCTACCCACGCCGCTCCACACCTCTCGTTTTCACTGCTTGCTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGGAAAAAGGAAGGCGACGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACCAAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCCGCTGCCAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCGTATCCTTTTTTTTTTTTTTTTTTTGCTGCTACTGCGTCGTTGGGTTGCCCTTCTGTTTGCCCGGTTCTTGATCCGATTTGGCTCGGAGGAGGAAGGAATCGTGGTTTGCCGGAGCAATCTGGGTAGGCATTTGCTCGAGCGGTTGAGGGGGAGTATTATTTCCCCTCCCTCAAATTCTAGTCTTGTGTTGTTGTGGGTAGTTTCTTGGAGCGACAGTGGTGGTCTCGAGAAAATTTTCGCCACCTTTTTCTTTCTTGGCAATCTGCGCCAAGGTTGAAGTCGTTTCTGATTTCAAGAGGGAACTGAACTACCACTAAATGTTTCAACAGGTTCAGCAAATAGTTTCCTTTAGTGCCCAGTTTAGGTTAGCAATGCGCCAATTCCGAATCACCAAGTCTAATTTGCTTCCGAAGCAACTATAACTAAATTGTGAAGTTCATCCGGGAAAAAAACAGCTATGTATTGATA]
[+] EMBL AK108379 [CGAAGGGGGAGAAAGGGAGGCGACAAAAACTCCACTCTCTCACTCCGGCACAGCACTCCCCCCACCCACCTACCCACGCCGCTCCACACCTCTCGTTTTCACTGCTTGCTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGGAAAAAGGAAGGCGACGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACCAAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCCGCTGCCAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCGTATCCTTTTTTTTTTTTTTTTTTTGCTGCTACTGCGTCGTTGGGTTGCCCTTCTGTTTGCCCGGTTCTTGATCCGATTTGGCTCGGAGGAGGAAGGAATCGTGGTTTGCCGGAGCAATCTGGGTAGGCATTTGCTCGAGCGGTTGAGGGGGAGTATTATTTCCCCTCCCTCAAATTCTAGTCTTGTGTTGTTGTGGGTAGTTTCTTGGAGCGACAGTGGTGGTCTCGAGAAAATTTTCGCCACCTTTTTCTTTCTTGGCAATCTGCGCCAAGGTTGAAGTCGTTTCTGATTTCAAGAGGGAACTGAACTACCACTAAATGTTTCAACAGGTTCAGCAAATAGTTTCCTTTAGTGCCCAGTTTAGGTTAGCAATGCGCCAATTCCGAATCACCAAGTCTAATTTGCTTCCGAAGCAACTATAACTAAATTGTGAAGTTCATCCGGGAAAAAAACAGCTATGTATTGATA]
[+] EMBL BI804567 [ GAGAGACGGGAGGATGGACCCCGAGAAGCGCGGCTACAGGCTCCGTATCC TTTTTTTTTTTTTTTTGCTGCTACTGCGTCGTTGGGTTGCCCTTCTGTTTGCCCGGTTCTTGATCCGATTTGGCTCGGAGGAGGAAGGAATCGTGGTTTGCCGGAGCAATCTGGGTAGGCATTTGCTCGAGCGGTTGCGGGGGAGTATTATTTCCCCTCCCTCAAATTCTAGTCTTGTGTTGTTGTGGGTAGTTTCTTGGAGCGACAGTGGTGGTCTCGAGAAAATTTTCGCCACCTTTTTCTTTCTTGGCAATCTGCGCCAAGGTTGAAGTCGTTTCTGATTTCAAGAAGGAACTGAACTACCACTAAATGTTTCAACAGGTTCAGCAAATAGTTTCCTTTAGTGCCCAGTTTAGGTTAGCAATGCGCCAATTCAGAATCACCAAGTCTAATTTGCTTCCGAAGCAACTATAACTAAATTGTGAAGTTCATCCGGGAAAAAAACAGCTAaaaaaaaaa ]
consensusID : consensus_11549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[CTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTACGTGCATTAATGTTATTCAAGGGAATGCTATTTAAAGGACGCCGCAAAACCTGCAAATTGCAAAGAGACACTGGATGTGAGGTGACAAGTGGGTTCTGTCCCTGCACTTCAGTTAGGAACCATTGTTTTAAAGAACTGCAGTGTTTGTAGCATCCTATAACCTATTGCTCTGCCTATGCCAAGATGAACTGGACTGTTGCTGACTTCGTTGATGTCACAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTACATGTGAGCTTGGCTGTGCATAATCTGTAATTACCATTTGTTNCA]
[-] EMBL CB657883 [CTTAAGCTTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTACGTGCATTAATGTTATTCAAGGGAATGCTATTTAAAGGACGCCGCAAAACCTGCAAATTGCAAAGAGACACTGGATGTGAGGTGACAAGTGGGTTCTGTCCCTGCACTTCAGTTAGGAACCATTGTTTTAAAGAACTGCAGTGTTTGTAGCATCCTATAACCTATTGCTCTGCCTATGCCAAGATGAACTGGACTGTTGCTGACTTCGTTGATGTCACAGGTTGCAACGTTGCAGTCGGTGTTTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTACATGTGAGCTTGGCTGTGCATAATCTGTAATTACCATTTGTTNCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11549#0 CGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACCAAGTA 60
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCCGCTGC 120
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATGGACCC 180
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTGAGGTCCTT 240
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGCAAGGTTAA 300
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACTGGCTCAGT 360
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCAAATGGTTC 420
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGGCACAGATC 480
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGTTCTTCAGA 540
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATATAAGGGTCA 600
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CAGAGGAGCAATTAGAATAATCAGATTTGCACCTGATGGACGATGGGTTGTCACCGGCGG 660
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACATGACTTCAA 720
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTGCTTGCAAC 780
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTGATTGGTTC 840
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGAAAAACCCT 900
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 ATTCTGTGGGTTAGACCAAAGCCTAAAGGTATTCTCTTGGGAGCCAGTAAGATGTCATGA 960
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CGTTGTTGACATGGGATGGAGCAATTTGGCTGACCTTAGTATTTATGAAGGAAAACTCTT 1020
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GGGATGCTCCTACCACGAATGCCGAGTTGGTGTTTGGGTTGCTGATATATCGCTCATTGG 1080
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GCCCTATGCTCTTGGTGTTTTGCCCAAAGCAAATTTCTTTGCTGAGCTGGTACATTCTTT 1140
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGACGACAATCCTTCGAAAACGATTGATACCACTGCCAAGTCCATTCCTGCTCTAGCAAC 1200
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GACACATCCAAAAAATCTGTACAAGGTCAAGGAAACAGGGACTGCTGAAAGTGGAATTCG 1260
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGGCTCAAATTTGACTCCAGCAAGTATGGATAAAACCAAGAGAGATAAGAGTGGTGCAAC 1320
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TCCTCGAAGACCTGATTCTTCTTTCAAATCATCTATTCAGAGCTCTACTCCAATGAGGCG 1380
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 CATGAAAGCTGCTGATAGTCCATACACAAATAGAAAAACAGTGGAGCGCAATTTTGCACA 1440
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 GAGGGATGCCTCGCTAGCATCCCGTACGGGAACAGCTGATAATTCTTCAACTGTTAAAAA 1500
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGGCCATCTTGCTGAGTCAGTATCTGTAAAAGATATTTACACTACACCACAGACTGTTTC 1560
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGTGCCTGTCGTTATGCCTAGAGACATTTTAGAGGACAAAACAGCAGGCAGCATTAGTGG 1620
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGGAATCAGAGGGAGAGCTGCAGTTGCAGATGATTTCCATGCTCCTGTTCATTCAAGGAA 1680
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 ACTTTCAGTTAATAGTTTTGTGGGTGATAGTGTTAACTCAACAAAATCCATGCTAACTGA 1740
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TCCTGATGTTTGCTCTGAGGGTTTCTCTGGCTTAAAATTCTCTTTTGGACTAACTCCATA 1800
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TTACAAGAAAGAAGAATATGATAATGTGGATAAAGTTGATAGTATGGATAAAGGTGATAA 1860
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTTCAGTCAAA 1920
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTCAGAGG 1980
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 AGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAGAGAGAGGC 2040
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGATCTGA 2100
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 ------------------------------------------------------------
consensus_11549#0 TGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCAACAAT 2160
consensus_11549#2 ---------------------------------------CTTAAGCTTTCTGCCTGTTCT 21
consensus_11549#1 -------------------CGAAGGGGGAGAAAGGGAGGCGACAAAAACTCCACT-CTCT 40
* * *
consensus_11549#0 TGATGAGGCGATG-ATTCCAATCAATTTGATGCAGA-ACCATGATGAATTTATAAATGCC 2218
consensus_11549#2 TGCGGGGTTACTG-A--CCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAATTGTT 78
consensus_11549#1 CACTCCGGCACAGCACTCCCCCCACCCACCTACCCACGCCGCTCCACACCTCTCGTTTTC 100
* * * ** * * ** * *
consensus_11549#0 GTAAAATCTCGGCTGACAAAGTTAGA--GATGATGCGTC--ATGTCTTTGACCAAAATGG 2274
consensus_11549#2 GTTGGATCTTA-TAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCATTCAG 137
consensus_11549#1 ACTGCTTGCTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGAA-------GAGGAAAAAGG 153
* * * ** * * * *
consensus_11549#0 TA-TCAAAGGAGCGATTGCTGCAGT-GGCAAAGTTGCCTGA--CAATGCTGTTCTAGCTG 2330
consensus_11549#2 CAGTTGGAGTTGATATTCAGGCTG--AGCAGAGGTACGTGCATTAATGTTATTCAAGGGA 195
consensus_11549#1 AAGGCGACGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATA 213
* * * * * * * * * * * * **
consensus_11549#0 ATGT-TGTTAGTACTCTGAAGGGGAAACTTGATCTCTTCAACCTAGACATTTTCTTAAGC 2389
consensus_11549#2 ATGC-TATTT--------AAAGGACGCCGCAAAACCTGCAAATTGCAAAGAGACACTGGA 246
consensus_11549#1 CCAAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACT 273
* * ** * * *
consensus_11549#0 TTTCTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCT 2449
consensus_11549#2 TGTGAG---GTGACAAGTGGGTTCTGTCCCTGCACTTCAGTTAGGAA--CCATTGTTT-T 300
consensus_11549#1 CCGCTGCCAGCGCGT-CGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGG 332
* * * * * ** ** *
consensus_11549#0 TTGGAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTATTCGTTCAACATTGTCAG 2509
consensus_11549#2 AAAGAACTGCAGTG----TTTGTAGCATCCTATAACCTATTGCTCTGCCTATGCCA--AG 354
consensus_11549#1 ATGGACCCCGAGAAGCGCGGCTACAGGCTCCGTATCCTTTTTTTTTTTTTTTTTTTGCTG 392
** * * * * * * *
consensus_11549#0 CTCATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAG-TCGG 2568
consensus_11549#2 ATGAACTGG--ACTGTTGCTGACTTCGTTGATGT-CACAGGTTGCAACGTTGCAG-TCGG 410
consensus_11549#1 CT-ACTGCGTCGTTGG-GTTGCCCTTCTGTTTGCCCGGTTCTTGATCCGATTTGGCTCGG 450
* * * ** * ** * ** * *** ** * * ****
consensus_11549#0 TGTTTTAACCATTTGCAAAAGATTC-AGCAAGTTCTACACCCGTTGATTATGCGGGGTGG 2627
consensus_11549#2 TGTTTTAACCATTTGCAAAAGATTC-AGCAAGTTCTACACCCGTTGATTATGCGGGGTGG 469
consensus_11549#1 AGGAGGAAGGAATCGTGGTTTGCCGGAGCAATCTGGGTAGGCATTTGCT-CGAGCGGTTG 509
* ** * * * ***** * * * ** * * * *** *
consensus_11549#0 TCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTT--GGTGGTGATC 2685
consensus_11549#2 TCAATCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTT--GGTGGTGATC 527
consensus_11549#1 AGGGGGAGTATTATTTCCCCTCCCTCAAATTCTAGTCTTGTGTTGTTGTGGGTAGTTTCT 569
** * * ** *** * * ** *** * *** **
consensus_11549#0 TGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGAC 2745
consensus_11549#2 TGAAACAAGCGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGAC 587
consensus_11549#1 TGGAGCGACAGTGGTGGTCT---------------------CGAGAAAATTTTCGCCACC 608
** * * * * ** *** **** * * *
consensus_11549#0 ATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATA 2805
consensus_11549#2 ATCATTCTTTTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATA 647
consensus_11549#1 TTTTTCTTTCTTGGCAATC--TGCGCCAAGGTTGAAG-----TCGTTTCTGATTTCAAGA 661
* * ** ******* ****** * * * ** ** ** * * *
consensus_11549#0 GCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCC 2865
consensus_11549#2 GCTTTGCAATTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCC 707
consensus_11549#1 G----GGAACTGAACTACCACTAAATGTTTCAACAGGTTCAGCAAATAGTT----TCCTT 713
* * ** *** ** ***** ** * * * * ***
consensus_11549#0 TGTTGTACATGTGAGCTTGGCTGTGCAT-AATCTGTAATTAACATTTGTTACATGGACAG 2924
consensus_11549#2 TGTTGTACATGTGAGCTTGGCTGTGCAT-AATCTGTAATTACCATTTGTTNCA------- 759
consensus_11549#1 TAGTGCCCAGTTTAGGTTAGCAATGCGCCAATTCCGAATCACCAAGTCTAATTTGC---- 769
* ** ** * ** ** ** *** *** *** * ** * *
consensus_11549#0 CCCCGGATGAGGGAGAAGCAAGTTCAAAAATGGTTGATGTCAGTTCAACGTGGTGATTCA 2984
consensus_11549#2 ------------------------------------------------------------
consensus_11549#1 TTCCGAAGCAACTATAACTAAATTGTGAA---GTTCATCCGGGAAAAAAACAGCTATGTA 826
consensus_11549#0 TTNTCNAAAAAAAAAAAAAAAAAAA 3009
consensus_11549#2 -------------------------
consensus_11549#1 TTGATA------------------- 832
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||