cluster # 11552

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Oryza sativa
cluster # 11552 cluster # 11552 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11552#0 length = 2378 sequences # 6

consensus_11552#1 length = 694 sequences # 1
consensus_11552#2 length = 564 sequences # 2

consensusID : consensus_11552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2378
fasta sequence

                              [AGCTGGTGGTTTGGTTGCATTGCGTTGCATCCCCCACGCGCACGCGGCCATCACCACGCCGCCTCCACGGCGGCAACGACAACGACAAGGCTTCCCTGCGAGCGCGAGCGCGAGCCAGCCATCTCGTACTGGCACCCACTCTCTCTCCCTGCCTCTCTGCCAATGGTGAGGCGAGGCCGGGGAGGGCGGTAGCAGCAGCAGCAGCTTCTCGTCGAGTGGCGGCGGCGGCGGCGGCGGAGGCTCGTGGGGGCGGGTGGCGGCGTGCGCGAGGGGCTGGGGATGGGGAGTAGCGGGGAGGCGGTGGCGGAGTGGGGGAAGGAGGGAGAGGGAGGCCTCCGGCATCGGTGGCGGGCGGAGGCGGTGGGGGCCTCGTCGTCGTTCGCGGAGGGGATGGGGGAGTTCGTGCTGAGGTCCATGGACGCCAGGTTCTCCGGATCGGCCGACGCTGATGGGTTCCCTTCCTCTCGGCACCCAGGATTTGGACATAGTAAATCCACAACTGCCACTTCGGATTGTTCTAAAGGGCAAGAGCATGTTTTTGTAAGATCATACTCTGATAGGTTGCTCAAGTGTGACCTCACGTTGGATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCACCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAAGTTGAAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATTTATAGCCTTAGCTAAACGACTTCAGGAGTTTGGTCACTATGTTAGATTGGCAACTCACGCCAATTTCCGTACCTTTGTGAAGTCAGCTGGTATTGATTTTTACCCGTTGGGTGGTGATCCTCGCATATTGGCTCAGTATATGACAAAAAACAAAGGATTTTGCCTGGCTGGACCCACAGAAATTTCTGTTCAAAGAAAGCAGCTTAAGGAAATAATTTTCTCTGTTCTACCTGCATGCACAGAACCTGATTTGGACACTGGATTACCTTTTAGAGCTCAGGCAATAATTGCAAATCCTCCTGCTTTAGGACATCTACATATTGCAGAGGCACTTGGGGTACCCCTGCACATCTTCTTCACTTTTCCATGGACGCCAACTAATGAGTTCCCTCATCCATTGGCACGAATGCCTCAGAGTGCAACTTACAGGCTATCCTATCTGATTTTGGATTTAGTAATTTGGTGGGGCACCAGGGGATTCATAAATGAGTTCAGGAAGAAGTTAAAATTGGCCCCTATTGCCTATTTCAGCACATATCATGGATCTATATCACACTTACCTACTGGATACATGTGGAGCCCTCATCTAATGCCGAAGCCAAATGATTGGGGTCCTCTCGTGGATGTTGTGGGATATTGCTTCTTAAATCTTGGAACAGAGTATCAACCACCGCAAGAGCTTTCTCAGTGGCTTCAACAGGGGCCAAAACCAATATATATTGGTTTTGGTAGCATGCCTCTTGGTGATGAAAAAAAAGTCACTTCTGTCATTCTGGACGCACTAAGAGAAACAGGACAAAGAGGAATCATTAGTCGGGGTTGGGGAGATCTTGGAAGTTTTTCAGAAGTTCCAGTTGATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCATTGATCAGTAACTTATTTTCACTTTTACATTGTGAATATGTAAAAAAAAAAAGGATCCGATGTTTTGGTTTTGCTGTAAAAAACTTCAATTGAATCCCCATTA]

[+] EMBL AK102226             [AGCTGGTGGTTTGGTTGCATTGCGTTGCATCCCCCACGCGCACGCGGCCATCACCACGCCGCCTCCACGGCGGCAACGACAACGACAAGGCTTCCCTGCGAGCGCGAGCGCGAGCCAGCCATCTCGTACTGGCACCCACTCTCTCTCCCTGCCTCTCTGCCAATGGTGAGGCGAGGCCGGGGAGGGCGGTAGCAGCAGCAGCAGCTTCTCGTCGAGTGGCGGCGGCGGCGGCGGCGGAGGCTCGTGGGGGCGGGTGGCGGCGTGCGCGAGGGGCTGGGGATGGGGAGTAGCGGGGAGGCGGTGGCGGAGTGGGGGAAGGAGGGAGAGGGAGGCCTCCGGCATCGGTGGCGGGCGGAGGCGGTGGGGGCCTCGTCGTCGTTCGCGGAGGGGATGGGGGAGTTCGTGCTGAGGTCCATGGACGCCAGGTTCTCCGGATCGGCCGACGCTGATGGGTTCCCTTCCTCTCGGCACCCAGGATTTGGACATAGTAAATCCACAACTGCCACTTCGGATTGTTCTAAAGGGCAAGAGCATGTTTTTGTAAGATCATACTCTGATAGGTTGCTCAAGTGTGACCTCACGTTGGATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCACCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAAGTTGAAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATTTATAGCCTTAGCTAAACGACTTCAGGAGTTTGGTCACTATGTTAGATTGGCAACTCACGCCAATTTCCGTACCTTTGTGAAGTCAGCTGGTATTGATTTTTACCCGTTGGGTGGTGATCCTCGCATATTGGCTCAGTATATGACAAAAAACAAAGGATTTTGCCTGGCTGGACCCACAGAAATTTCTGTTCAAAGAAAGCAGCTTAAGGAAATAATTTTCTCTGTTCTACCTGCATGCACAGAACCTGATTTGGACACTGGATTACCTTTTAGAGCTCAGGCAATAATTGCAAATCCTCCTGCTTTAGGACATCTACATATTGCAGAGGCACTTGGGGTACCCCTGCACATCTTCTTCACTTTTCCATGGACGCCAACTAATGAGTTCCCTCATCCATTGGCACGAATGCCTCAGAGTGCAACTTACAGGCTATCCTATCTGATTTTGGATTTAGTAATTTGGTGGGGCACCAGGGGATTCATAAATGAGTTCAGGAAGAAGTTAAAATTGGCCCCTATTGCCTATTTCAGCACATATCATGGATCTATATCACACTTACCTACTGGATACATGTGGAGCCCTCATCTAATGCCGAAGCCAAATGATTGGGGTCCTCTCGTGGATGTTGTGGGATATTGCTTCTTAAATCTTGGAACAGAGTATCAACCACCGCAAGAGCTTTCTCAGTGGCTTCAACAGGGGCCAAAACCAATATATATTGGTTTTGGTAGCATGCCTCTTGGTGATGAAAAAAAAGTCACTTCTGTCATTCTGGACGCACTAAGAGAAACAGGACAAAGAGGAATCATTAGTCGGGGTTGGGGAGATCTTGGAAGTTTTTCAGAAGTTCCAGTTGATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATATATATTGC                                                                                                        ]
[+] EMBL CF304656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACTTCGGATTGTTCTAAAGGGCAAGAGCATGTTTTTGTAAGATCATACTCTGATAGGTTGCTCAAGTGTGACCTCACGTTGGATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCATCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAAGTTGAAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATTTATAGCCTTAGCTAAACGACTTCAGGAGTTTGGTCACTATGTTAGATTGGCAACTCACGCCAATTTCCGTACCTTTGTGAAGTCAGCTGGTATTGATTTTTACCCGTTGGGTGGTGATCCTCGCATATTGGCTCAGTATATGACAAAAAACAAAGGATTTTGCCTGGCTGGACCCACAGAAATTTCTGTTCANAGAAAGCAGCTTAAGGAAATAATTTTCTCTGTTCTACCTGCATGCACAGAACCTGATTTGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB000806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAAAACCAATATATATTGGTTTTGGTAGCATGCCTCTTGGTGATGAAAAAAAAGTCACTTCTGTCATTCTGGACGCACTAAGAGAAACAGGACAAAGAGGAATCATTAGTCGGGGTTGGGGAGATCTTGGAAGTTTTTCAGAAGTTCCAGTTGATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGGTAAATCACGAACAATGGAACTGGNCATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGA                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA764184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAGATAAATATTCGGTCAATGTATATTGCATTGATCAGTAACTTATTTTCACTTTTACATTGTGAATATGTAAAAAAAAAAAGGATCCGATGNTTTGGTTTTGCTGTACCAAACTTCAATTGAATCCCCATTA]
[+] EMBL BM421242             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTC ATGTATATTGCATTGATCAGTAACTTATTTTCACTTTTACATTGTGAATATGTAAAAAAAAACAGGATCCGATGTTTTGGTTTTGCTGTAAAAA                     ]
[+] EMBL BM419657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCTTGATCCTGAGGTAAAATCACGAAC ATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCATTGATCAGTAACTTATTTTCACTTTTACATTGTGAATATGT AAAAAAAAAAGGATCCGATGTTTTGGTTTTGCTGTAAAAA                     ]




>consensus_11552#0
AGCTGGTGGTTTGGTTGCATTGCGTTGCATCCCCCACGCGCACGCGGCCATCACCACGCC
GCCTCCACGGCGGCAACGACAACGACAAGGCTTCCCTGCGAGCGCGAGCGCGAGCCAGCC
ATCTCGTACTGGCACCCACTCTCTCTCCCTGCCTCTCTGCCAATGGTGAGGCGAGGCCGG
GGAGGGCGGTAGCAGCAGCAGCAGCTTCTCGTCGAGTGGCGGCGGCGGCGGCGGCGGAGG
CTCGTGGGGGCGGGTGGCGGCGTGCGCGAGGGGCTGGGGATGGGGAGTAGCGGGGAGGCG
GTGGCGGAGTGGGGGAAGGAGGGAGAGGGAGGCCTCCGGCATCGGTGGCGGGCGGAGGCG
GTGGGGGCCTCGTCGTCGTTCGCGGAGGGGATGGGGGAGTTCGTGCTGAGGTCCATGGAC
GCCAGGTTCTCCGGATCGGCCGACGCTGATGGGTTCCCTTCCTCTCGGCACCCAGGATTT
GGACATAGTAAATCCACAACTGCCACTTCGGATTGTTCTAAAGGGCAAGAGCATGTTTTT
GTAAGATCATACTCTGATAGGTTGCTCAAGTGTGACCTCACGTTGGATATGCTATCGGAA
AATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACTGGAG
GTAGATGTGAAACGTAGTGCTCTTATTGCACCCGAACTTTCAGAGATTGATGCATTCGGT
TCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAAGTTG
AAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATTTATAGCCTTAGCT
AAACGACTTCAGGAGTTTGGTCACTATGTTAGATTGGCAACTCACGCCAATTTCCGTACC
TTTGTGAAGTCAGCTGGTATTGATTTTTACCCGTTGGGTGGTGATCCTCGCATATTGGCT
CAGTATATGACAAAAAACAAAGGATTTTGCCTGGCTGGACCCACAGAAATTTCTGTTCAA
AGAAAGCAGCTTAAGGAAATAATTTTCTCTGTTCTACCTGCATGCACAGAACCTGATTTG
GACACTGGATTACCTTTTAGAGCTCAGGCAATAATTGCAAATCCTCCTGCTTTAGGACAT
CTACATATTGCAGAGGCACTTGGGGTACCCCTGCACATCTTCTTCACTTTTCCATGGACG
CCAACTAATGAGTTCCCTCATCCATTGGCACGAATGCCTCAGAGTGCAACTTACAGGCTA
TCCTATCTGATTTTGGATTTAGTAATTTGGTGGGGCACCAGGGGATTCATAAATGAGTTC
AGGAAGAAGTTAAAATTGGCCCCTATTGCCTATTTCAGCACATATCATGGATCTATATCA
CACTTACCTACTGGATACATGTGGAGCCCTCATCTAATGCCGAAGCCAAATGATTGGGGT
CCTCTCGTGGATGTTGTGGGATATTGCTTCTTAAATCTTGGAACAGAGTATCAACCACCG
CAAGAGCTTTCTCAGTGGCTTCAACAGGGGCCAAAACCAATATATATTGGTTTTGGTAGC
ATGCCTCTTGGTGATGAAAAAAAAGTCACTTCTGTCATTCTGGACGCACTAAGAGAAACA
GGACAAAGAGGAATCATTAGTCGGGGTTGGGGAGATCTTGGAAGTTTTTCAGAAGTTCCA
GTTGATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCA
GTGGTACATCATGGTGGGGCTGGTACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACT
ACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGT
GTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATA
AGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAACTGGCAATAGCAATTGGG
AATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTCATCGACATCTCCCTGCCGAACTT
CCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGTTT
TCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATA
GAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTCTT
GTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCATTGAT
CAGTAACTTATTTTCACTTTTACATTGTGAATATGTAAAAAAAAAAAGGATCCGATGTTT
TGGTTTTGCTGTAAAAAACTTCAATTGAATCCCCATTA

consensusID : consensus_11552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [GATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACANCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCCCGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTTATCGGCATCTCCCTGCCGAACTTCCGCTTGCCCCCCCCCCCTCAGATGTAAAGGAAGAACAGCTAGCCTTTTTTCAATGGTTTTCCCAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTCCAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCCTTGATCAGTAACTTATTTTCCCTTTTCCCTTGTGAATATGTAAAAAAAAAGGATCCGATGTTTTGGTTTTGCTGTCCCCAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA763103             [GATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTGGTACATCATGGTGGGGCTGGTACCACANCCGCGGGGCTTGTAGCTGGGTGCCCAACTACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGATTCATGCTTGATCCTGAGGTAAAATCCCGAACAATGGAACTGGCAATAGCAATTGGGAATGAAGATGGCGTGGCAGCCGCAGTAGACTCATTTTATCGGCATCTCCCTGCCGAACTTCCGCTTGCCCCCCCCCCCTCAGATGTAAAGGAAGAACAGCTAGCCTTTTTTCAATGGTTTTCCCAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTCCAAGTCAAAAATAATGTCTTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCCTTGATCAGTAACTTATTTTCCCTTTTCCCTTGTGAATATGTAAAAAAAAAGGATCCGATGTTTTGGTTTTGCTGTCCCCAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11552#1
GATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCAGTG
GTACATCATGGTGGGGCTGGTACCACANCCGCGGGGCTTGTAGCTGGGTGCCCAACTACC
ATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGTGTT
GGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATAAGA
TTCATGCTTGATCCTGAGGTAAAATCCCGAACAATGGAACTGGCAATAGCAATTGGGAAT
GAAGATGGCGTGGCAGCCGCAGTAGACTCATTTTATCGGCATCTCCCTGCCGAACTTCCG
CTTGCCCCCCCCCCCTCAGATGTAAAGGAAGAACAGCTAGCCTTTTTTCAATGGTTTTCC
CAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGATAGAG
GTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTCCAAGTCAAAAATAATGTCTTGTA
AAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCCTTGATCAG
TAACTTATTTTCCCTTTTCCCTTGTGAATATGTAAAAAAAAAGGATCCGATGTTTTGGTT
TTGCTGTCCCCAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11552#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [ATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACA-CTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCATCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAGTTGAAGATTGTTATTCTTGTAGTTGGAACA-CGAGGGGATGTCCAGCCATTTATAGCCTTAGCTAAACGACTTCAGATGATGTGAACATAACGGCCTGCCTGGCAGTGGTGGTCGAGATTATGAGCAAGACTACACATAACTGAACCATGGCTACAAGTTTATGCTGTCTACCAGCCTTTGAAATGTTTTAGAGGGACAGAGCTACACTACTCTTTACTTATCTACCTTGATATATCTGACTTGGATTGCACTATTTTTACACCCGTAGTATGTTTTTGTGTATTTATTTTTTAAGTGTATATACTCATGATATCTTATGGAATCCTCTTAATTAATAGCCATCATCAAATAACATACTGGATTTAAAAAAAAAA]

[+] EMBL BI804331             [ATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACA CTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCATCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAGTTGAAGATTGTTATTCTTGTAGTTGGAACA CGAGGGGATGTCCAGCCATTTATAGCCTTAGCTAAACGACTTCAGATGATGTGAACATAACGGCCTGCCTGGCAGTGGTGGTCGAGATTATGAGCAAGACTACACATAACTGAACCATGGCTACAAGTTTATGCTGTCTACCAGCCTTTGAAATGTTTTAGAGGGACAGAGCTACACTACTCTTTACTTATCTACCTTGATATATCTGACTTGGATTGCACTATTTTTACACCCGTAGTATGTTTTTGTGTATTTATTTTTTAAGTGTATATACTCATGATATCTTATGGAATCCTCTTAATTAATAGCCATCATCAAATAACATACTGGATTTAAAAAAAAAA]
[+] EMBL BI804044             [                TGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACCTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCATCCGAACTTTCAGAGATTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAGTTGAAGATTGTTATTCTTGTAGTTGGAACACCGAGGGGATGTCCA CCATTTATAGCCTTAGCTAAACGACTTCAGATGATGTGAACATAACGGCCTGCCTGGCAGTGGTGGTCGAGATTATGAGCAAGACTACACATAACTGAACCATGGCTACAAGTTTATGCTGTCTACCAGCCTTTGAAATGTTTTAGAGGGACAGAGCTACACTACTCTTTACTTATCTACCTTGATATATCTGACTTGGATTGCACTATTTTTACACCCGTAGTATGTTTTTGTGTATTTATTTTTTAAGTGTATATACTCATGATATCTTATGGAATCCTCTTAATTAATA CCATCATCAAATAACATACTGGATTTAAAAAAAAAA]




>consensus_11552#2
ATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATG
ATGGTACACTGGAGGTAGATGTGAAACGTAGTGCTCTTATTGCATCCGAACTTTCAGAGA
TTGATGCATTCGGTTCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGT
CAGTCCCAAGTTGAAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATT
TATAGCCTTAGCTAAACGACTTCAGATGATGTGAACATAACGGCCTGCCTGGCAGTGGTG
GTCGAGATTATGAGCAAGACTACACATAACTGAACCATGGCTACAAGTTTATGCTGTCTA
CCAGCCTTTGAAATGTTTTAGAGGGACAGAGCTACACTACTCTTTACTTATCTACCTTGA
TATATCTGACTTGGATTGCACTATTTTTACACCCGTAGTATGTTTTTGTGTATTTATTTT
TTAAGTGTATATACTCATGATATCTTATGGAATCCTCTTAATTAATAGCCATCATCAAAT
AACATACTGGATTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11552#0      AGCTGGTGGTTTGGTTGCATTGCGTTGCATCCCCCACGCGCACGCGGCCATCACCACGCC 60
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GCCTCCACGGCGGCAACGACAACGACAAGGCTTCCCTGCGAGCGCGAGCGCGAGCCAGCC 120
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      ATCTCGTACTGGCACCCACTCTCTCTCCCTGCCTCTCTGCCAATGGTGAGGCGAGGCCGG 180
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GGAGGGCGGTAGCAGCAGCAGCAGCTTCTCGTCGAGTGGCGGCGGCGGCGGCGGCGGAGG 240
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CTCGTGGGGGCGGGTGGCGGCGTGCGCGAGGGGCTGGGGATGGGGAGTAGCGGGGAGGCG 300
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTGGCGGAGTGGGGGAAGGAGGGAGAGGGAGGCCTCCGGCATCGGTGGCGGGCGGAGGCG 360
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTGGGGGCCTCGTCGTCGTTCGCGGAGGGGATGGGGGAGTTCGTGCTGAGGTCCATGGAC 420
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GCCAGGTTCTCCGGATCGGCCGACGCTGATGGGTTCCCTTCCTCTCGGCACCCAGGATTT 480
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GGACATAGTAAATCCACAACTGCCACTTCGGATTGTTCTAAAGGGCAAGAGCATGTTTTT 540
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTAAGATCATACTCTGATAGGTTGCTCAAGTGTGACCTCACGTTGGATATGCTATCGGAA 600
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      AATGAGAAGATAAAGATAATTGAGAATCTGGTAAAGATCCAGAATGATGGTACACTGGAG 660
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTAGATGTGAAACGTAGTGCTCTTATTGCACCCGAACTTTCAGAGATTGATGCATTCGGT 720
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      TCTCTGTCTCGTGATATTGTGGAAGCTGCACCTGGATTGAGCAAGTCAGTCCCAAAGTTG 780
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      AAGATTGTTATTCTTGTAGTTGGAACACGAGGGGATGTCCAGCCATTTATAGCCTTAGCT 840
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      AAACGACTTCAGGAGTTTGGTCACTATGTTAGATTGGCAACTCACGCCAATTTCCGTACC 900
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      TTTGTGAAGTCAGCTGGTATTGATTTTTACCCGTTGGGTGGTGATCCTCGCATATTGGCT 960
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CAGTATATGACAAAAAACAAAGGATTTTGCCTGGCTGGACCCACAGAAATTTCTGTTCAA 1020
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      AGAAAGCAGCTTAAGGAAATAATTTTCTCTGTTCTACCTGCATGCACAGAACCTGATTTG 1080
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GACACTGGATTACCTTTTAGAGCTCAGGCAATAATTGCAAATCCTCCTGCTTTAGGACAT 1140
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CTACATATTGCAGAGGCACTTGGGGTACCCCTGCACATCTTCTTCACTTTTCCATGGACG 1200
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CCAACTAATGAGTTCCCTCATCCATTGGCACGAATGCCTCAGAGTGCAACTTACAGGCTA 1260
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      TCCTATCTGATTTTGGATTTAGTAATTTGGTGGGGCACCAGGGGATTCATAAATGAGTTC 1320
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      AGGAAGAAGTTAAAATTGGCCCCTATTGCCTATTTCAGCACATATCATGGATCTATATCA 1380
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CACTTACCTACTGGATACATGTGGAGCCCTCATCTAATGCCGAAGCCAAATGATTGGGGT 1440
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CCTCTCGTGGATGTTGTGGGATATTGCTTCTTAAATCTTGGAACAGAGTATCAACCACCG 1500
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      CAAGAGCTTTCTCAGTGGCTTCAACAGGGGCCAAAACCAATATATATTGGTTTTGGTAGC 1560
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      ATGCCTCTTGGTGATGAAAAAAAAGTCACTTCTGTCATTCTGGACGCACTAAGAGAAACA 1620
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GGACAAAGAGGAATCATTAGTCGGGGTTGGGGAGATCTTGGAAGTTTTTCAGAAGTTCCA 1680
consensus_11552#1      ------------------------------------------------------------
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTTGATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCA 1740
consensus_11552#1      ---GATGTCTTCATTTTGGAGGATTGCCCTCACGACTGGCTGTTTCCTCGCTGTGCTGCA 57
consensus_11552#2      ------------------------------------------------------------
                                                                                   

consensus_11552#0      GTGGTACATCATGGTGGGGCTGGTACCACAGCCGCGGGGCTTGTAGCTGGGTGCCCAACT 1800
consensus_11552#1      GTGGTACATCATGGTGGGGCTGGTACCACANCCGCGGGGCTTGTAGCTGGGTGCCCAACT 117
consensus_11552#2      -----------------ATATGCTATCGGAAAATGAGAAGATAAAGATAATTGAGAATCT 43
                                           ** ** *  *      *    *  ** *   **   * **

consensus_11552#0      ACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGT 1860
consensus_11552#1      ACCATAGTGCCATTTTTTGGAGATCAATTCTTCTGGGGTGAGAGAATTCATGCACAAGGT 177
consensus_11552#2      GGTAAAGATCCAGAAT--GATGGTACACTGGAGGTAGATGTGAAACGTAGTGCTCT---T 98
                          * **  ***   *  *  * *  * *       * ** ** *  *  *** *    *

consensus_11552#0      GTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATA 1920
consensus_11552#1      GTTGGCCCTGCACCTATTCCTATAGCAGAACTTACTGTCGAGGCACTTTCAAATGCTATA 237
consensus_11552#2      ATTGCATCCGAACTTTCAGAGATTGATGCATTCGGT-TCTCTGTCTCGTGATATTGTGGA 157
                        ***   * * ** *      ** *  * * *   * **   *     * * **  *  *

consensus_11552#0      AGATTCATGCTTGATCCTGAGGTAAAATCACGAACAATGGAAC-TGGCAATAGCAATTGG 1979
consensus_11552#1      AGATTCATGCTTGATCCTGAGGTAAAATCCCGAACAATGGAAC-TGGCAATAGCAATTGG 296
consensus_11552#2      AGCTGCAC-CTGGATTGAGCAAGTCAGTCCCAAGTTGAAGATTGTTATTCTTGTAGTTGG 216
                       ** * **  ** ***   *      * ** * *      **   *     * * * ****

consensus_11552#0      GAATGAAGATGGCGTGGCAGCCGCA-GTAGACTCATTTCATCGACATCTCCCTGCCGAAC 2038
consensus_11552#1      GAATGAAGATGGCGTGGCAGCCGCA-GTAGACTCATTTTATCGGCATCTCCCTGCCGAAC 355
consensus_11552#2      AACACGAGGGGATGTC-CAGCCATTTATAGCCTTAGCTAAACGACTTCAGATGATGTGAA 275
                        *    **  *  **  *****     *** ** *  * * ** * **          * 

consensus_11552#0      TTCCGCTTGCCCCACCACCCACAGATGTAAAGGAAGAACAGCTAGACTTTTTTCAATGGT 2098
consensus_11552#1      TTCCGCTTGCCCCCCCCCCCTCAGATGTAAAGGAAGAACAGCTAGCCTTTTTTCAATGGT 415
consensus_11552#2      CATAAC--GGCCTGCCTGGCAGTGGTGGTCGAGATTATGAGCAAGACTACAC---ATAAC 330
                            *  * **  **   *   * **     **  *  *** ** **       **   

consensus_11552#0      TTTCACAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGA 2158
consensus_11552#1      TTTCCCAAGCCCTTGAGAAGTGTTGCTTCCCATTCAATCCTTAGCTGTCCATAGGTTAGA 475
consensus_11552#2      TGAACCATGGC--TACAAGTTTATGCTGTCTACC--AGCCTTTGAAATGTTTTAGAGGGA 386
                       *    ** * *  *   *  *  ****  * *    * **** *   *   *  *   **

consensus_11552#0      TAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTACAAGTCAAAAATAATGTC 2218
consensus_11552#1      TAGAGGTTCAATTTATTTATTGCTTATTTATTTGTGTGGTTCCAAGTCAAAAATAATGTC 535
consensus_11552#2      CAGAGCTACA--CTACTCTTTACTTATCTACCTTGATATATCTGACTTGGATTGCACTAT 444
                        **** * **   ** *  ** ***** **  *   *   *   * *   *    *    

consensus_11552#0      TTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCATTG 2278
consensus_11552#1      TTGTAAAAGACTGCCGTAGACTGTAGTGAAATAAATATTCGGTCAATGTATATTGCCTTG 595
consensus_11552#2      TTTTA-----CACCCGTAGTATGTTTTTGTGTATTTATTTTTTAAGTGTATATACTCATG 499
                       ** **     *  ******  ***  *    **  ****   * * *******     **

consensus_11552#0      ATCAGTAACTTATTTTCACTTTTACATTGTGAATATGTAAAAAAAAAAAGGATCCGATGT 2338
consensus_11552#1      ATCAGTAACTTATTTTCCCTTTTCCCTTGTGAATATGTAAAAAAAAA--GGATCCGATGT 653
consensus_11552#2      AT----ATCTTATGGAATCCTCTTAATT---AATAGCCATCATCAAA-------TAACAT 545
                       **    * *****     * * *   **   ****   *  *  ***         *  *

consensus_11552#0      TTTGGTTTTGCTGT----AAAAAACTTCAATTGAATCCCCATTA 2378
consensus_11552#1      TTTGGTTTTGCTGTCCCCAAAAAAAAAAAAAAAAAAAAAAA--- 694
consensus_11552#2      ACTGGATTT---------AAAAAAAAAA---------------- 564
                         *** ***         ******