These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 872 fasta sequence [AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA-CAGGCGACGA-CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT-CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA-TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA-TTGATCTATAGGTACATCTTATTTGTCCA-TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG-CAAGAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGTTACGTAGCG] [+] EMBL AK071581 [AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACGATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAGAAATGCATGCA ] [+] EMBL AK119260 [ CGGCTCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATA AAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTA ] [+] EMBL CF282345 [ TCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAA CAGGCGACGA CGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGCTGCATAGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTAT ] [+] EMBL AU029354 [ GGGAAACCAGGCACCGACCGAGAAGAGAGNATCAGCTGGGGGTGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCAT CAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCANCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAGAAATGCATGCACGCNGTTTCCAAAAAAAAAAAAAAA ] [-] EMBL CF282344 [ GGAGGTTGATTACGATGCATCCGATGACACCATCCAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTTTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTTTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATTTTATTTGTCCA TGAGCTTTTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACT TGGATACGGCAGGGCATCTCTTTGTTTTTTGTAACCCAACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAAAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGTTACGTAGCG] [-] EMBL CF281816 [ CGATGACACCAT CAAATTTAGTTATAGAAGATGAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGCAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGTTAAGCGCCTTGAATACGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTTCAAGGTTTAAGGGTATGATAGTTACCTGCAATGGTCTGGGCATAGCCCA TTGTTCAAAATGGGTCCGGCATGTTATGGAATTGAAGCCCCA TTAATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACATTCTTTAAGGCCAATTGGATGCTTAGATGTTTCTTTTAACACAACTATGTATACGGCAGGGCATCTCTCTGTTCTTTGGAACCCCACAATGGATTCTGTCGTATACTAATGTATTTTTGCTG CAAAAAAaa ] [+] EMBL BM420338 [ CATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGC CCTTGAATATGACCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCACTTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCACTTGATCTATAGGTACATCTTATTTGTCCACTGAGCTTCTTCAGTACTT TTTGAGGCCNATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACAC AC ATGGATTCTGTCGTATACTAATGTATTTTTGCTGCCAAGAAATGCATGC CCCAGTTTCCAGATGTAAAAAAAAAA ] [+] EMBL AK105032 [ CTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCA TTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCA TTGATCTATAGGTACATCTTATTTGTCCA TGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTATTT ] consensusID : consensus_11562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [NGNATCGGTGGGNCGGACGGTGGGCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGCTCCCCACAAGGCTATTACAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAGATTAGTTTTATGTGGCATCCAGACAAGATAAGGGGTTATNATGTACAGT] [+] EMBL C74038 [NGNATCGGTGGGNCGGACGGTGGGCCGATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCCCTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACGCGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGGTGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGCTCCCCACAAGGCTATTACAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAGATTAGTTTTATGTGGCATCCAGACAAGATAAGGGGTTATNATGTACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11562#0 AGAAAAGCATAGGAAATAAAGTAAAGGGAGGAGAGGACAAGGAACTCCTTCCG-GCTCCG 59 consensus_11562#1 ---------------------------------NGNATCGGTGGGNCGGACGGTGGGCCG 27 * * * * * * * *** consensus_11562#0 ATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCC 119 consensus_11562#1 ATCCCACCCACTCCGGCGGCCTCTCGCTCGGCCTCGCCCTCGCCTCCGATCGATTCGCCC 87 ************************************************************ consensus_11562#0 CTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACG 179 consensus_11562#1 CTCGTCTTCCTCCTCCCGGATCCCCCAAGCCAAGCCCGGGGAGCCGGGCCGCCGCCAACG 147 ************************************************************ consensus_11562#0 CGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGG 239 consensus_11562#1 CGCGCGGCGGACACGAGGAAGGGAAACAGGCGACGACGAGAAGAGAGGATCAGCTGGGGG 207 ************************************************************ consensus_11562#0 TGATGAATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTA 299 consensus_11562#1 TGATGAATTGTTACGNTGCATGGACGGAGCAAGCGAGAAGC-TCCCCACAAGG-CTATTA 265 *************** ************************* *********** ****** consensus_11562#0 CAAAGTTCTGGAGGTTGATTACGATGCATCCGATGACACCATCAAATTGAGTTATAGAAG 359 consensus_11562#1 CAAAGTTCTTGAGGTTGATTACGATGCATCCGATGACAACATCAAATTGAGTTATAGAAG 325 ********* **************************** ********************* consensus_11562#0 ATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGATGTCACAGCTAAATT 419 consensus_11562#1 ATTAGTTTT-ATGTGGCATCCAGACAAG-ATAAGGGG--TTATNATGT-ACAGT------ 374 ***** *** ****************** ******** * ** **** **** consensus_11562#0 TCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGA 479 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 CCTTTCCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAA 539 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 GGGTATGATACTTACCTGCAATGGTCTTGGCATAGACCATTCTTCAAAATGGGCCCGGCA 599 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 TTTGAGGGAATTGGAGCCCCATTGATCTATAGGTACATCTTATTTGTCCATGAGCTTCTT 659 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 CAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATA 719 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 CGGCAGGGCATCTCTCTGTTCTTTGTAACACAACAATGGATTCTGTCGTATACTAATGTA 779 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 TTTTTGCTGCAAGAAATGCATGCACGCAGTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAA 839 consensus_11562#1 ------------------------------------------------------------ consensus_11562#0 AAAAAAAAAAACACTGTCAGCCGTTACGTAGCG 872 consensus_11562#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||