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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 937 fasta sequence
[TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC]
[-] EMBL C97865 [TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAAACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGCGAGACACCACGACGGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTNGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAG ]
[+] EMBL CB684193 [ GCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAA ]
[-] EMBL AU172703 [ tttttttGCGATAGAAAGGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCANAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCANAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCAT ]
[-] EMBL CB684192 [ GGACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGCGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTTCTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCATGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCCCTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTCTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCC ]
[-] EMBL AK062542 [ ACCTTGACATTAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTA ]
[-] EMBL OS0032A [ GGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACTCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCTCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTCCCCAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCGCCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGG ]
[-] EMBL AU172956 [ AGCGACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGAAGAGACATTGCATCCACCACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATACTTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCACAGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATCCATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGATGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACGGTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAGAGGTAC]
consensusID : consensus_11566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC]
[-] EMBL AU029995 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCNANANACCACGACGGCGANANAAAGGACCTTGACATNAGGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCACATCTGGAAGTACAAGGCTACAGAAAGAATGAGGGCGACGATTTGGTGTGGCCGATTCACCGAAGCCGCTTGGGAGACACCCCCAGAAGGGCCGTTTGCAGGAGAAACGTTGGAGCNCCCAGGGAAGCCCGGAATATCGCCGCCAGCCTC]
consensusID : consensus_11566#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC]
[-] EMBL BI813577 [TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATGAGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCACATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTGTGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCACGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCCCAGCTCCTGGTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11566#0 TTTTTTTTTTTTTTTATCTCAAGCAATAGGTTTTGAATTTGAACGCCCATGTGGTTACAA 60
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 ACTGAATAAGCCCGCCCCAATTGGGGCTTCCGTTTGACGCATTAAGAATTGGATCGCTGC 120
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC 39
consensus_11566#0 GAGACACCACGACGGCGATAGAAAGGACCTTGACATTAG-GGTTCCACCAGGCCCAAATG 179
consensus_11566#2 ---------TTTTTGCGATAGAAAGGACCTTGACATTAGTGGTTCCACCAGGCCCAAATG 51
consensus_11566#1 NANANACCACGACGGCGANANAAAGGACCTTGACATNAG-GGTTCCACCAGGCCCAAATG 98
**** * *************** ** ********************
consensus_11566#0 AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 239
consensus_11566#2 AGGGCCCCCTGTTCAATACACACAGCCAGCAACAACAACAATACTCTGCACACGAATTCA 111
consensus_11566#1 AGGGCCCCCTGTTCAANACACACAGCCAGCAACAACAACAATACNCTGCACACGAATTCA 158
**************** *************************** ***************
consensus_11566#0 CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 287
consensus_11566#2 CATCTGGAAGTACAATGGCTACATGAAATGAATTGATGGGCTGACTGATTTTGGTTGTTG 171
consensus_11566#1 CATCTGGAAGTACAA-GGCTACAGAAA--GAATGAGGGCGACGATT---------TGGTG 206
*************** ******* ** **** * * ** * ** **
consensus_11566#0 TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACTCCCAGAAGGG-----CCGTTTGCA 339
consensus_11566#2 TGCCTGATTCACCTGAAGCCTGCTTGGTGAGACACTCCCATGAATGTGTGCCTGTTTGCA 231
consensus_11566#1 TGGCCGATTCACC-GAAGCC-GCTTGG-GAGACACCCCCAGAAGGG-----CCGTTTGCA 258
** * ******** ****** ****** ******* **** * * * *******
consensus_11566#0 GG--AGAAACG--TTGGA-GCTCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTCCC 391
consensus_11566#2 CGTGAGAAACTGTCTGGATGCTCCCAGTGAAGCCCTGGAATATCTGCCTGCCAGCCTCCC 291
consensus_11566#1 GG--AGAAACG--TTGGA-GCNCCCAGGGAAGCCC-GGAATATCG--CCGCCAGCCTC-- 308
* ****** **** ** ***** ******* ******** * *********
consensus_11566#0 CAGCTCCTGGTGCAGGTGATGGAGCAAGGTATGATCCTTGGTTTACTGCAATTGGTGTCG 451
consensus_11566#2 CAGCTCCTGGTGCAC--------------------------------------------- 306
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 CCCTGAGTGGGGGGAACTGATGTGGTCCTGGGCATGTGGGTTGAAGACCAGAGGAGAGCG 511
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 ACGTGGCAATGGTTCCATTAACAAGTCCAGCATAGCTGCAAGATGAGACATTGCATCCAC 571
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 CACTGGTGGATTGGGCAGTCACATTCCCAAGCATGAGGTTGCTATTGGGGCACTGCATAC 631
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 TTGAACATGATGCTGTTAATGAAGCTGGTGTGCAATACAATTTGAGATCTCCTGGTCCAC 691
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 AGCTGCACTGCACACAGTTTCCAGCAGTTAGTGCATAGGTCCCATTTGCCACAAGCAATC 751
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 CATAGTCCGAAGCAGAGTTGGGAAACATTGATGCACAGGCTGGCAGTGGGATTGCAAGGA 811
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 TGTCACCAGGTGCGACAATGGGGCTCCCCATGGCGTTCACATTGCTGATGTCCTGTAACG 871
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 GTGGTGGCGTGGGTCGCGGCGATGGACTGCACGGTGTCCCCGACCCGCACGACATAGGAG 931
consensus_11566#2 ------------------------------------------------------------
consensus_11566#1 ------------------------------------------------------------
consensus_11566#0 AGGTAC 937
consensus_11566#2 ------
consensus_11566#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||