These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 991 fasta sequence [CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC-TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC-TGCACACCGAAGCAAAAC-TGAAC-TGCAAATCGAAGCAAGC-TTTAGTGCAACGG-GAGGC-TGCCCAAC-TGAATGCT-GTGC-TGA-CCAATCCGCAG-TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC-AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT-GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC-CTCAGG-TTTTTTTTTTGAC-GGAAAAACAGTTGGAGAGGCTCCTACTGC-AATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA] [+] EMBL CF277625 [CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTANTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTC ] [+] EMBL AK102026 [ CTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC CTCAGG TTTTTTTTTTGAC GGAAAAACAGTTGGAGAGGCTCCTACTGC AATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCT ] [+] EMBL CF278857 [ CTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGC AGCAGAGAA GGGA GGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGG ] [+] EMBL AU032344 [ TTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACNAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAAC TGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATCTTGCACACCGAGGCAAAACTTGAACTTGNAAATCGAAGCAAGCNTTTAGTGCAAGGG GAGGT NGCCCAAC TGAAAGCTGGTTN TGACCCAAT ] [+] EMBL C73854 [ GGGCGCGCCGATCTCCATCTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACCACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAACTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCAGTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAGAAGAAACTTGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAACTTGAAC TGCAAATCGAGGCAAGC TTTAGTGCAACGGNGAGGCTTGCCCAACTTGAATGCT GTGCTTGA CCAATCCGCAGTTTCCAGNTCGACCCGTTTNCGGCGATCCATtaa ] [+] EMBL CF331760 [ gagtagaaATGACCTTTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCCTCAAATC TGCACACCGAAGCAAAAC TGAAC TGCAAATCGAAGCAAGC TTTAGTGCAACGG GAGGC TGCCCAAC TGAATGCT GTGC TGA CCAATCCGCAG TTCCAGCTCGACCCGTTTGCGGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCGTCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCT GTTTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC CTCAGGTTTTTTTTTTTGAC GGAAAAACAGTTGGAGAGGCTCCTACTGC AATATATTACT ] [+] EMBL AU172755 [ AAAAGAAAGANCAAGAAGAAGAATGCTTCATCGGCCTCCGAGGCAATGGATATNTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCGCAATTATCGTC AACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTNT GTTTCAGCATCGGCACTCTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTC NTCAGG TTTTTTTTTTGAC GGAAAAACAGTTGGANAGGCTCCTACTGC AATATATTACTTGAGTGTACAAAANACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGNACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA] [+] EMBL BI797460 [ aAAAGGAATGGGGCCCAATTATCGTCAAACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTGGTCAAATTCTGGTTTCAGCATC GCACTCTCCTCCCAGAGGTGTGA GTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTCACTCAGG TTTTTTTTTTGACAGGAAAAACA TTGGAGAGGCTCCTACTGCAAATATATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGTACCTGGTTCTCGCCAAAAAAA ] consensusID : consensus_11574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [ATTCCGCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTGTCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGGCAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTTTTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCGGGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATATATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF331759 [ATTCCGCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTGTCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGGCAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTTTTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCGGGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATATATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11574#0 CTCCTCCTCCGCTCCTTTGCGCCGCCGCCAACACACAGGGCAGGGCGCGCCGATCTCCAT 60 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 CTGGCGAGCAGAGAAGGGGAGGGGAGGGGAGGGGATCCTGTTTGGGGGTTCAACTGAACC 120 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 ACCATGTCCCAAGTTGGATCCGCCCCTGCTTTCAGGACTGGGTCACCTAAGAAGCATGAA 180 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 CTGAAGTCCAAACAGAAGCTTGAGAAGAAGCTCAGCTTCTACACAAAAGTGAAAGATGCA 240 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 GTAACCTCCCTAAATGCTACAAAGACTATCTGCAAGAAATCTAAACAGAGGAGCCGCCAG 300 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 AAGAAACTGAAAGCATATGATCTCTCAATGCTCTCTGAGTTCCTTCCTGAAACAGATGCC 360 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 TCAAATCTGCACACCGAAGCAAAACTGAACTGCAAATCGAAGCAAGCTTTAGTGCAACGG 420 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 GAGGCTGCCCAACTGAATGCTGTGCTGACCAATCCGCAGTTCCAGCTCGACCCGTTTGCG 480 consensus_11574#1 ------------------------------------------------------------ consensus_11574#0 GCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCC 540 consensus_11574#1 -------------------------------------------------------ATTCC 5 ***** consensus_11574#0 GCCAAGCAGGGGAAGGACCCTAAGGACAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCA 600 consensus_11574#1 GCCAAGCAGGGGAAGGGCCCTAAGGGCAAGAAAAGAAAGAACCAGAAGAAGAATGGTTTG 65 **************** ******** **************** ************ ** consensus_11574#0 TCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTACCCTACCAAAGGAATGGGGCG 660 consensus_11574#1 TCGGCCTCCGAGGCAATGGATATTTGATATGGCAAAGTACCCTACCAAAGGAATGGGGGG 125 *********************** ********************************** * consensus_11574#0 CAATTATCGTCAACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCTGTT 720 consensus_11574#1 CAATTATTGTCAACCTCAGTTTGAAATTGTGTGATTTTTTAAACCTTGTCAAATTTTGTT 185 ******* ******************* ******* * ***************** **** consensus_11574#0 TCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCG 780 consensus_11574#1 TTAGCATTGGCACTTTCCTCCCAAAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGGGTCG 245 * ***** ****** ******** ******************************* **** consensus_11574#0 GCTCTCCTCAGGTTTTTTTTTT-GACGGAAAAACAGTTGGAGAGGCTCCTACTGCAATAT 839 consensus_11574#1 GGTTTCCTCAGGTTTTTTTTTTTGACGGAAAAACAGTTGGAAAGGGTCCTACTGCAATAT 305 * * ****************** ****************** *** ************** consensus_11574#0 ATTACTTGAGTGTACAAGAGACTTTACCTCCTCCCAGCGAACTGCTTGTAGCGTGGCTGA 899 consensus_11574#1 ATTACTTGAGTGGACAAAAGACTTTACCTCCTCCCAACGAACTGGTTGTAGGGTGGGTGA 365 ************ **** ****************** ******* ****** **** *** consensus_11574#0 AGTTTCTTTGTGCTGATTTGTACATATGATGTTTATGATGTTTTGGTTAATTGTTCATGT 959 consensus_11574#1 AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 392 * * * * * consensus_11574#0 ACCTGGTTCTCGCCAAAAAAAAAAAAAAAAAA 991 consensus_11574#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||