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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 980 fasta sequence
[GCGGCGTCGTGTGGCCTTGGTTGCTTCGGAATCTCACCACCCAACCCGTTCGGATTAGATAGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTAT]
[+] EMBL AK105925 [GCGGCGTCGTGTGGCCTTGGTTGCTTCGGAATCTCACCACCCAACCCGTTCGGATTAGATAGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGA ]
[+] EMBL AK066019 [ TTGGTTGCTTCGGAATCTCACCACCCAACCCGTTCGGATTAGATAGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGGTTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTAT]
[+] EMBL AU069034 [ TGCTTCGGAATCTCACCACCCAACCCGTTCGGATTAGATAGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATAATGGCTGCNACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGNCCAGG GGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGANGGCGGC ]
[+] EMBL CB666241 [ ACCACCCCACCCGTTCGGATTAGATAGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCC AACACC ]
[+] EMBL CF326692 [ TCGCCGCCGCCGCCGCCGCTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCG CGCCGTGCTGAAGGCGGCACG ]
[+] EMBL AY224460 [ GCTATGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCC ]
[-] EMBL CB666242 [ TGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGTCCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGCCGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGGAGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTGGTGATAAGTATAAAATCAATGATCCTTTTGCTAG ]
consensusID : consensus_11577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[AGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAAAAAAAAAAAAAAAAAC]
[-] EMBL CF326737 [AGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAAAAAAAAAAAAAAAAA ]
[-] EMBL CB964997 [ gaTGTTGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAATAAAAAAGTTAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11577#0 GCGGCGTCGTGTGGCCTTGGTTGCTTCGGAATCTCACCACCCAACCCGTTCGGATTAGAT 60
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 AGCCCGCTTCCTCCTCTCTCTCTCAGCTCACCACACCTCGAGTCGCCGCCGCCGCCGCCG 120
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 CTGCTGCTGCTTACCTCCTCCGCGCCGCGCACTCCTTGCACTAGCCCATGGCGACGGCTA 180
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 TGATGGCTGCGACCGCCACCTCGTGCTCCCCTCGCCGCGCGCCGGTCGTCGCGTCGTCGT 240
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 CCGTGCAGCCGCCCAGGCGGCAGCAGCAGCAGCAACCGCGGAGGGGATTGAAGCAGCTGC 300
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 CGGGGCTCGTGGCGACGGCGGCCGTGGCCGTGGCCGCGGCGCCGCTACCGGCGCTGGCGG 360
consensus_11577#1 ------------------------------------------------------------
consensus_11577#0 AGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCG 420
consensus_11577#1 AGCAGATGGAGAAGGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGCTGATCGCGACCG 60
************************************************************
consensus_11577#0 AGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCA 480
consensus_11577#1 AGTTCCTGCTGCTGATGGTGGCGCTGGACAAGCTCTACTTCACGCCGCTGGGCAAGTTCA 120
************************************************************
consensus_11577#0 TGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGG 540
consensus_11577#1 TGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGG 180
************************************************************
consensus_11577#0 AGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCG 600
consensus_11577#1 AGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCG 240
************************************************************
consensus_11577#0 CCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACG 660
consensus_11577#1 CCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACG 300
************************************************************
consensus_11577#0 AGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGA 720
consensus_11577#1 AGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGA 360
************************************************************
consensus_11577#0 AGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCA 780
consensus_11577#1 AGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCA 420
************************************************************
consensus_11577#0 AGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAAC 840
consensus_11577#1 AGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAAC 480
************************************************************
consensus_11577#0 ACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTC 900
consensus_11577#1 ACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTC 540
************************************************************
consensus_11577#0 CTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCT 960
consensus_11577#1 CTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCT 600
************************************************************
consensus_11577#0 AGAAATTGGATTGAAATTAT 980
consensus_11577#1 AAAAAAAAAAAAAAAAAC-- 618
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||