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Oryza sativa
cluster # 11588 cluster # 11588       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11588#0 length = 1841 sequences # 4  
consensus_11588#1 length = 1355 sequences # 4  
consensus_11588#2 length = 657 sequences # 1  

consensusID : consensus_11588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1841
fasta sequence
                              [CCTCACCATCTCCATCCATCTCACCCGTTAACCCGCTAAGCTCTCTCTCCAAGATCCGCTTCGGTTTCCTCTCCGGCGATCTCGCCGGCGACCATGCCGGCGACCGACTACCAGGGCTCCTCCTCGACCCACTCCCACCCGTCGCCCTTCTCCTCGTTCGGCCGCTCCCTCCTCTCGCTCCGCCGCGACAGCCCCGCCGCCGCCGCCGGCGCGTCCCCGGCCATGGCGTCCGGCGAGGAGGCCGACCTGGAGGCGTTCCAGCGGCACGTGGCGGCGCACCTCGCCGATCTCAGGGGCGGGGAGGACGAGCTCCTGTCCATCGAGTGGATCCGGCGGCTGCTCGAGGCGTTCCTGCTGTGCCAGGAGGAGTTCCGGGTGGTGGTGGCGCTGGCGCGCCGCCGCGGGGCGCTGTCGGCGGCGGCGGAGAAGATGGTGGGGGATTTCTACGAGCGCGCGGTGAAGGCGCTCGACGTGTGCAACGCCGCACGCGACGGCGTCGACCAGGTCAGGCGGTGGGAGCGGCTCGCCGGCATCGCGGCGTCCGTGCTGCTCGCCCCAGGGGAGATCCACGAGGGCCAGCTCCGCCGCGCGCGGAAGGCGCTCTCCGACCTCTCGGTGCTCCTCATCGACGACGCCGCGGCCGCCGCGGGTGGCGGCGGCGTCGCCTCCTTCCTCTCCTCCCACCGCAACCGCTCCTTCGGCCGCGCCCGCGCGTCGCCCTCCCGCTCCGCGACGCTCGCCTCCTCCTCATCCTCCTCGTCGTCGTCCTCCTCCTCCTCCCACTTCCGCTCGCTCTCGTGGAGCGTCTCCCGCAACTGGTCGGCGGCTAGGCAGCTGCAGGCCATCGGGTCCGGCCTGGCGGCGCCGCGCGCGCACGAGGGGGGACTCGTGGCGCCGGTGTACTCCATGGGCTGCCTGCTCCACCTCGCCGCGTGGGCCCTCGTCGCCGCCGTGCCGTGCCCGGACCGCGCCGCCGCGCTCCAGGCGCACCACCTCCCCGCCGCGCCGCCGCGCGCCGCGTTCCCATGGGCGCCGCCGCTGCTCGCGCTCCAGGAGCGCCTCACCGAGGAGGGGAAGCGCAAGGACAGGCGCAACTCCTGCGGCCTCCTCAAGGAAATCCACGCGCTGGAGAAATGCACGCAGCGGCTCGCCGAGGCGATCGACGCCGCACCCGTCCCGCTCTCCGGTGAGCGCGAGGCCGAGGTACGGGAGGCCGCCGCCGAGCTGGCTGCCGTGTGCGCCGCCATGAGGGCCGGCCTTGAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCAGCCGCATGGAGGGGCTCGATTCGCCGATGCTCAACGCCGATTGAAACATGGAGAATTCACATTTGATCGCGCAATGTGGTGGTGAT-AGGTAATGCCGATCGAACCGTCGA-GAATTTGGATTTGATCGCGCAAATG-TGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTC-ACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAGTCCTCCATGTGTGCGCGGCTAATTCTGGGAGTAACTTATAGTTGAAAAATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATGTCGACAAAAAAATTAAACAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTGTCATAATTCATGTTTGGTCCTGATATTTGGATGGTTTAATCAAAAGGTCAAATCTTGA]

[+] EMBL AK105532             [CCTCACCATCTCCATCCATCTCACCCGTTAACCCGCTAAGCTCTCTCTCCAAGATCCGCTTCGGTTTCCTCTCCGGCGATCTCGCCGGCGACCATGCCGGCGACCGACTACCAGGGCTCCTCCTCGACCCACTCCCACCCGTCGCCCTTCTCCTCGTTCGGCCGCTCCCTCCTCTCGCTCCGCCGCGACAGCCCCGCCGCCGCCGCCGGCGCGTCCCCGGCCATGGCGTCCGGCGAGGAGGCCGACCTGGAGGCGTTCCAGCGGCACGTGGCGGCGCACCTCGCCGATCTCAGGGGCGGGGAGGACGAGCTCCTGTCCATCGAGTGGATCCGGCGGCTGCTCGAGGCGTTCCTGCTGTGCCAGGAGGAGTTCCGGGTGGTGGTGGCGCTGGCGCGCCGCCGCGGGGCGCTGTCGGCGGCGGCGGAGAAGATGGTGGGGGATTTCTACGAGCGCGCGGTGAAGGCGCTCGACGTGTGCAACGCCGCACGCGACGGCGTCGACCAGGTCAGGCGGTGGGAGCGGCTCGCCGGCATCGCGGCGTCCGTGCTGCTCGCCCCAGGGGAGATCCACGAGGGCCAGCTCCGCCGCGCGCGGAAGGCGCTCTCCGACCTCTCGGTGCTCCTCATCGACGACGCCGCGGCCGCCGCGGGTGGCGGCGGCGTCGCCTCCTTCCTCTCCTCCCACCGCAACCGCTCCTTCGGCCGCGCCCGCGCGTCGCCCTCCCGCTCCGCGACGCTCGCCTCCTCCTCATCCTCCTCGTCGTCGTCCTCCTCCTCCTCCCACTTCCGCTCGCTCTCGTGGAGCGTCTCCCGCAACTGGTCGGCGGCTAGGCAGCTGCAGGCCATCGGGTCCGGCCTGGCGGCGCCGCGCGCGCACGAGGGGGGACTCGTGGCGCCGGTGTACTCCATGGGCTGCCTGCTCCACCTCGCCGCGTGGGCCCTCGTCGCCGCCGTGCCGTGCCCGGACCGCGCCGCCGCGCTCCAGGCGCACCACCTCCCCGCCGCGCCGCCGCGCGCCGCGTTCCCATGGGCGCCGCCGCTGCTCGCGCTCCAGGAGCGCCTCACCGAGGAGGGGAAGCGCAAGGACAGGCGCAACTCCTGCGGCCTCCTCAAGGAAATCCACGCGCTGGAGAAATGCACGCAGCGGCTCGCCGAGGCGATCGACGCCGCACCCGTCCCGCTCTCCGGTGAGCGCGAGGCCGAGGTACGGGAGGCCGCCGCCGAGCTGGCTGCCGTGTGCGCCGCCATGAGGGCCGGCCTTGAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCAGCCGCATGGAGGGGCTCGATTCGCCGATGCTCAACGCCGATTGAAACATGGAGAATTCACATTTGATCGCGCAATGTGGTGGTGAT AGGTAATGCCGATCGAACCGTCGA GAATTTGGATTTGATCGCGCAAATG TGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTC ACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAGTCCTCCATGTGTGCGCGGCTAATTCTGGGAGTAACTTATAGTTGAAAAATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATGTCGACAAAAAAATTAAACAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTGTCATAATTCATGTTTGGTCCTGATATTTGGATGGTTTAATCAAAAGGTCAAA      ]
[+] EMBL CB677388             [                            TAACCCGCTAAGCTCTCTCTCCAAGATCCGCTTCGGTTTCCTCTCCGGCGATCTCGCCGGCGACCATGCCGGCGACCGACTACCAGGGCTCCTCCTCGACCCACTCCCACCCGTCGCCCTTCTCCTCGTTCGGCCGCTCCCTCCTCTCGCTCCGCCGCGACAGCCCCGCCGCCGCCGCCGGCGCGTCCCCGGCCATGGCGTCCGGCGAGGAGGCCGACCTGGAGGCGTTCCAGCGGCACGTGGCGGCGCACCTCGCCGATCTCAGGGGCGGGGAGGACGAGCTCCTGTCCATCGAGTGGATCCGGCGGCTGCTCGAGGCGTTCCTGCTGTGCCAGGAGGAGTTCCGGGTGGTGGTGGCGCTGGCGCGCCGCCGCGGGGCGCTGTCGGCGGCGGCGGAGAAGATGGTGGGGGATTTCTACGAGCGCGCGGTGAAGGCGCTCGACGTGTGCAACGCCGCACGCGACGGCGTCGACCAGGTCAGGCGGTGGGAGCGGCTCGCCGGCATCGCGGCGTCCGTGCTGCTCGCCCCAGGGGAGATCCACGAGGGCCAGCTCCGCCGCGCGCGGAAGGCGCTCTCCGACCTCTCTGTGCTCCTCATCGACGACGCCGCAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB677389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCTGCTCGCGCTCCAGGAGCGCCTCACCGAGGAGGGGAAGCGCAAGGACAGGCGCAACTCCTGCGGCCTCCTCAAGGAAATCCACGCGCTGGAGAAATGCACGCAGCGGCTCGCCGAGGCGATTGACGCCGCACCCGTCCCGCTCTCCGGTGAGCGCGAGGCCGAGGTACGGGAGGCCGCCGCCGAGCTGGCTGCCGTGTGCGCCGCCATGAGGGCCGGCCTTGAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCACCCGCATGGAGGGGCTCGATTCGCCGATGCTCAACGCCGATTGAAACATGGAGAATTCCCATTTGATCGCGCAAAGTGGCGG CATCAGGTAATACCCATCGAACC TCGACGAATTTGGCTTTGATCGCGCAAATGATGGCGGTTATAGGTAGCTATCCTGTTCTCGGTTTTCTTCCTCTACTTGTGGTGGTGTAGTAGTAATTATAAAATGTGCGCCCTTCTGTACATCAAG                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA766710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCGATGCT NACGCCGATTGAAACATGGAGAATTNACATTTGATCGCGCAATGTGGTGGTGAT AGGTAATGCCGATCGAACCGTCGA GAATTTGGATTTGATCGCGCAAATG TGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTC ACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAGTCCTCCATGTGTGCGCGGCTAATTCTGGGAGTAACTTATAGTTGAAAGATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATGTCGACAAAAAAATTAAACAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTGTCATAATTCATGTTTGGTCCTGATATTTGGATGGTTTAATCAAAAGGTCAAATCTTGA]


>consensus_11588#0 CCTCACCATCTCCATCCATCTCACCCGTTAACCCGCTAAGCTCTCTCTCCAAGATCCGCT TCGGTTTCCTCTCCGGCGATCTCGCCGGCGACCATGCCGGCGACCGACTACCAGGGCTCC TCCTCGACCCACTCCCACCCGTCGCCCTTCTCCTCGTTCGGCCGCTCCCTCCTCTCGCTC CGCCGCGACAGCCCCGCCGCCGCCGCCGGCGCGTCCCCGGCCATGGCGTCCGGCGAGGAG GCCGACCTGGAGGCGTTCCAGCGGCACGTGGCGGCGCACCTCGCCGATCTCAGGGGCGGG GAGGACGAGCTCCTGTCCATCGAGTGGATCCGGCGGCTGCTCGAGGCGTTCCTGCTGTGC CAGGAGGAGTTCCGGGTGGTGGTGGCGCTGGCGCGCCGCCGCGGGGCGCTGTCGGCGGCG GCGGAGAAGATGGTGGGGGATTTCTACGAGCGCGCGGTGAAGGCGCTCGACGTGTGCAAC GCCGCACGCGACGGCGTCGACCAGGTCAGGCGGTGGGAGCGGCTCGCCGGCATCGCGGCG TCCGTGCTGCTCGCCCCAGGGGAGATCCACGAGGGCCAGCTCCGCCGCGCGCGGAAGGCG CTCTCCGACCTCTCGGTGCTCCTCATCGACGACGCCGCGGCCGCCGCGGGTGGCGGCGGC GTCGCCTCCTTCCTCTCCTCCCACCGCAACCGCTCCTTCGGCCGCGCCCGCGCGTCGCCC TCCCGCTCCGCGACGCTCGCCTCCTCCTCATCCTCCTCGTCGTCGTCCTCCTCCTCCTCC CACTTCCGCTCGCTCTCGTGGAGCGTCTCCCGCAACTGGTCGGCGGCTAGGCAGCTGCAG GCCATCGGGTCCGGCCTGGCGGCGCCGCGCGCGCACGAGGGGGGACTCGTGGCGCCGGTG TACTCCATGGGCTGCCTGCTCCACCTCGCCGCGTGGGCCCTCGTCGCCGCCGTGCCGTGC CCGGACCGCGCCGCCGCGCTCCAGGCGCACCACCTCCCCGCCGCGCCGCCGCGCGCCGCG TTCCCATGGGCGCCGCCGCTGCTCGCGCTCCAGGAGCGCCTCACCGAGGAGGGGAAGCGC AAGGACAGGCGCAACTCCTGCGGCCTCCTCAAGGAAATCCACGCGCTGGAGAAATGCACG CAGCGGCTCGCCGAGGCGATCGACGCCGCACCCGTCCCGCTCTCCGGTGAGCGCGAGGCC GAGGTACGGGAGGCCGCCGCCGAGCTGGCTGCCGTGTGCGCCGCCATGAGGGCCGGCCTT GAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCAGCCGCATGGAG GGGCTCGATTCGCCGATGCTCAACGCCGATTGAAACATGGAGAATTCACATTTGATCGCG CAATGTGGTGGTGATAGGTAATGCCGATCGAACCGTCGAGAATTTGGATTTGATCGCGCA AATGTGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTCACTTGTGGTGGTCT AGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCAT CTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATG GCATTTTTGTTAGTCCTCCATGTGTGCGCGGCTAATTCTGGGAGTAACTTATAGTTGAAA AATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATGTCGACAAAAAAATTAAA CAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTGTCATAATTCATGTTTGG TCCTGATATTTGGATGGTTTAATCAAAAGGTCAAATCTTGA



consensusID : consensus_11588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1355
fasta sequence
                              [TAATGCTATGTTTCATTTTGCTAAATGATATCAATTAACCTGTGTATCAATTCCATAAATTGGATATAGCAATAAATAAATCAGCAAAATTCTTTTATTTTAGATAGAAGAAACTTTTCTTCTATCTAAAATAAAAGAATGTACCCTTCTATCCAAATCCAATTTGCATCGATAAAATAAATCCAAATTCCAGTAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATACATGAAAAAGAAAGGAGGTAGAAAAATTTTTGGATTTATGGTTAAAGAAGAAAAAGAAGAAAACTGGGGTTCTGTTGAATTTCAAGTATTCAGTTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGAATTACACAAAAAAGATTTTTCATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCAACGTTTGCTGGCTTATTTGGCAAAGAAAAATAGAGTACGTTATAAGAAATTAATCAGTCAGTTGGATATTAGGGA-GCGGTAATTTCATCGTTCGAATTTTTTTTCTTATTTTATTAGTAGTCTTATAGTAGTCTTAGATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAAT-AATCCATTTT-CAT-GGAAT-AATGAATTAA-GGAAGAAA-GGATATGAGTCTACCGCTTACAAGAAAAGAT-CT-CATGATAGT-CAAT-ATGGGCCCT-CAGCACCCAT-CAAT-GCATGGTGTT-CTT-CGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGGCAAATAGGAAAGCTACTTAGGCAGGAGAT-AGGGGAATTCCTTAAGAAAGAAAAAAGAATAAGAACACAGATACATAACATAAAAAAAAGAATAAATAAGACGAAATTCGACCTCCCCCTACATATTTAATTTCTTCTCCTATACAAAAACTAGCAAGACCTACTCCATTGGTAATTCCATCAATGACACCCTTGTCGAAAAACTGCGTTAGTTCGGTTAATCCTCTTATACCCAAGGTAAAGGTCCTAGTATAGAAAATATCTATATAACCGCGATTATATGACCAACTATATATCTTTTTTTTTAGTTGATGGAAAAAATACTTTTTCGGACCCCCTTTTACAAAGGAATTTATTAAATCCAAATTCTGAAAAAAAGAGTAAGCAGATCCATAAAACATATATGCTATGAATAGACCAAAAATAGCTAGACTTACAGAAGAAATTGCATTAGTGATAAATTCATATGAATTTATGGAAGAATTAGAACTT]

[+] EMBL CB630694             [TAATGCTATGTTTCATTTTGCTAAATGATATCAATTAACCTGTGTATCAATTCCATAAATTGGATATAGCAATAAATAAATCAGCAAAATTCTTTTATTTTAGATAGAAGAAACTTTTCTTCTATCTAAAATAAAAGAATGTACCCTTCTATCCAAATCCAATTTGCATCGATAAAATAAATCCAAATTCCAGTAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATACATGAAAAAGAAAGGAGGTAGAAAAATTTTTGGATTTATGGTTAAAGAAGAAAAAGAAGAAAACTGGGGTTCTGTTGAATTTCAAGTATTCAGTTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGAATTACACAAAAAAGATTTTTCATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCAACGTTTGCTGGCTTATTTGGCAAAGAAAAATAGAGTACGTTATAAGAAATTAATCAGTCAGTTGGATATTAGGGA GCGGTAATTTCATCGTTCGAATTTTTTTTCTTATTTTATTAGTAGTCTTATAGTAGTCTTAGATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAAT AATCCATTTT CAT GGAAT AATGAATTAA GGAAGAAA GGATATGAGTCTACCGCTTACAAGAAAAGAT CT CATGATAGT CAAT ATGGGCCCT CAGCACCCAT CAAT GCATGGTGTT CTT CGACTGATCGTTACTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI804400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAAAAATAGAGTACGTTATAAGAAATTAATCA TCACTTGAATATTAGGGACCCGGTAATTTCATCGTTCGAATTTTTTTTCTTATTTTATTAGTAGTCTTATAGTAGTCTTAGA TTTCCATTTTGATGA CCTCTTTTTGAGGAATTCATGGAAT AACCCATTTT CAT GGAAT AATGAATTAA GGAAGAAA GGATATGAGTCTCCCGCTTACAAGAAAAGAT CT CATGATAGT CAAT ATGGCCCCT CAGCACCCAT CAAT  CATGGTGTT CTT CGACTGATCGTTACTCTCGAT GTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATC GC AATAGGAAAGCTACTTAGCCAGGAGATAAGGGGAAATCCCT TTAAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB678276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TAGTAGTCTTATAGTAGTCTTAGATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAAT AATCCATTTT CAT GGAAT AATGAATTAA GGAAGAAA GGATATGAGTCTACCGCTTACAAGAAAAGAT CT CATGATAGT CAAT ATGGGCCCT CAGCACCCAT CAAT GCATGGTGTT CTT CGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGGCAAATAGGAAAGCTACTTAGGCAGGAGAT AGGGGAATTCCTTAAGAAAGAAAAAAGAATAAGAACACAGATACATAACATAAAAAAAAGAATAAATAAGACGAAATTCGACCTCCCCCTACATATTTAATTTCTTCTCCTATACAAAAACTAGCAAGACCTACTCCATTGGTAATTCCATCAATGACACCCTTGTCGAAAAACTGCGTTAGTTCGGTTAATCCTCTTATACCCAAGGTAAAGGTCCTAGTATAGAAAATATCTATATAACCGCGATTATATGACCAACTATATATCTTTTTTTTTAGTTGATGGAAAAAATACTTTTTCGGACCCCCTTTTACAAAGGAATTTATTAAATCCAAATTCTGAAAAAAAGAGTAAGCAGATCCATAAAACATATATGCTATGAATAGACCAAAAATAGCTAGACTTACAGAAGAAATTGCATTAGTGATAAATTCATATGAATTTATGGAAGAATTAGAACTT]
[+] EMBL BQ907559             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             atgGGAATGAATCCATTTTGCATGGGAATGAATGAATTAAGGGAAGAAAGGGATATGAGTCTACCGCTTACAAGAAAAGATGCTGCATGATAGTGCAATGATGGGCCCTGCAGCACCCATGCAATGGCATGGTGTTGCTTGCGACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTTACACAGAGGAATGGAAAAAATCGGCAAATAGGAAAGCTACTTAGGCAGGAGAT AGGGGAATTCCTTAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_11588#1 TAATGCTATGTTTCATTTTGCTAAATGATATCAATTAACCTGTGTATCAATTCCATAAAT TGGATATAGCAATAAATAAATCAGCAAAATTCTTTTATTTTAGATAGAAGAAACTTTTCT TCTATCTAAAATAAAAGAATGTACCCTTCTATCCAAATCCAATTTGCATCGATAAAATAA ATCCAAATTCCAGTAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAA CTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATACATGAAAAAGAA AGGAGGTAGAAAAATTTTTGGATTTATGGTTAAAGAAGAAAAAGAAGAAAACTGGGGTTC TGTTGAATTTCAAGTATTCAGTTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGA ATTACACAAAAAAGATTTTTCATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCA ACGTTTGCTGGCTTATTTGGCAAAGAAAAATAGAGTACGTTATAAGAAATTAATCAGTCA GTTGGATATTAGGGAGCGGTAATTTCATCGTTCGAATTTTTTTTCTTATTTTATTAGTAG TCTTATAGTAGTCTTAGATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAAT AATCCATTTTCATGGAATAATGAATTAAGGAAGAAAGGATATGAGTCTACCGCTTACAAG AAAAGATCTCATGATAGTCAATATGGGCCCTCAGCACCCATCAATGCATGGTGTTCTTCG ACTGATCGTTACTCTCGATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTT ACACAGAGGAATGGAAAAAATCGGCAAATAGGAAAGCTACTTAGGCAGGAGATAGGGGAA TTCCTTAAGAAAGAAAAAAGAATAAGAACACAGATACATAACATAAAAAAAAGAATAAAT AAGACGAAATTCGACCTCCCCCTACATATTTAATTTCTTCTCCTATACAAAAACTAGCAA GACCTACTCCATTGGTAATTCCATCAATGACACCCTTGTCGAAAAACTGCGTTAGTTCGG TTAATCCTCTTATACCCAAGGTAAAGGTCCTAGTATAGAAAATATCTATATAACCGCGAT TATATGACCAACTATATATCTTTTTTTTTAGTTGATGGAAAAAATACTTTTTCGGACCCC CTTTTACAAAGGAATTTATTAAATCCAAATTCTGAAAAAAAGAGTAAGCAGATCCATAAA ACATATATGCTATGAATAGACCAAAAATAGCTAGACTTACAGAAGAAATTGCATTAGTGA TAAATTCATATGAATTTATGGAAGAATTAGAACTT



consensusID : consensus_11588#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence
                              [GTTGTTGGGCGAGGCGGGAACGACGGGGCTGGCGGGATGGGTTGTGGGTTACGTATTCTCCATCTCGCTTCCTAAGGGCCGGGTTCACGTGTGGGTTCGGATGCGCCTCGGATTATTCCTGCCGAAGTGAGGCACTGACGGGTTCTGTTTGTCAGAAGTATTCGGACCCTTCTTCCCGATGAAAAATTTTTTTTGTGGAATTCCAAAGGTAAAGCGAGTCTCCGCATCTGATTGGTGAAACGGAATCCTTGAAATTCGGCAGAGCCCCAGTTTTCTTCTTTTTCTTCTTTAACCATAAATCCAAAAATTTTTCTACCTCCTTTCTTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTACTGGAATTTGGATTTGATCGCGCAAATGTGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTCACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAAAAAAAAAAAAAA]

[-] EMBL CA759295             [GTTGTTGGGCGAGGCGGGAACGACGGGGCTGGCGGGATGGGTTGTGGGTTACGTATTCTCCATCTCGCTTCCTAAGGGCCGGGTTCACGTGTGGGTTCGGATGCGCCTCGGATTATTCCTGCCGAAGTGAGGCACTGACGGGTTCTGTTTGTCAGAAGTATTCGGACCCTTCTTCCCGATGAAAAATTTTTTTTGTGGAATTCCAAAGGTAAAGCGAGTCTCCGCATCTGATTGGTGAAACGGAATCCTTGAAATTCGGCAGAGCCCCAGTTTTCTTCTTTTTCTTCTTTAACCATAAATCCAAAAATTTTTCTACCTCCTTTCTTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTACTGGAATTTGGATTTGATCGCGCAAATGTGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTCACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTCTGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCCATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAAAAAAAAAAAAAA]


>consensus_11588#2 GTTGTTGGGCGAGGCGGGAACGACGGGGCTGGCGGGATGGGTTGTGGGTTACGTATTCTC CATCTCGCTTCCTAAGGGCCGGGTTCACGTGTGGGTTCGGATGCGCCTCGGATTATTCCT GCCGAAGTGAGGCACTGACGGGTTCTGTTTGTCAGAAGTATTCGGACCCTTCTTCCCGAT GAAAAATTTTTTTTGTGGAATTCCAAAGGTAAAGCGAGTCTCCGCATCTGATTGGTGAAA CGGAATCCTTGAAATTCGGCAGAGCCCCAGTTTTCTTCTTTTTCTTCTTTAACCATAAAT CCAAAAATTTTTCTACCTCCTTTCTTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAA ATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTC ATCTACTACTGGAATTTGGATTTGATCGCGCAAATGTGGTGGTTATAGGTAGCTCTCCTG TTCTTGGTTTTTTTCCTCACTTGTGGTGGTCTAGTAGTAATTATAAAATGTGTGCCGTTC TGTAAAGGAAGGGGGGAAAGGAAAGGAACCATCTTTATGTAAAGATGATTCCTTCTTCCC ATGTTTTGATGCTGCATTTGGTGTATATCATGGCATTTTTGTTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11588#0      CCTCACCATCTCCATCCATCTCACCCGTTAACCCGCTAAGCTCTCTCTCCAAGATCCGCT 60
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      TCGGTTTCCTCTCCGGCGATCTCGCCGGCGACCATGCCGGCGACCGACTACCAGGGCTCC 120
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      TCCTCGACCCACTCCCACCCGTCGCCCTTCTCCTCGTTCGGCCGCTCCCTCCTCTCGCTC 180
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      CGCCGCGACAGCCCCGCCGCCGCCGCCGGCGCGTCCCCGGCCATGGCGTCCGGCGAGGAG 240
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      GCCGACCTGGAGGCGTTCCAGCGGCACGTGGCGGCGCACCTCGCCGATCTCAGGGGCGGG 300
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      GAGGACGAGCTCCTGTCCATCGAGTGGATCCGGCGGCTGCTCGAGGCGTTCCTGCTGTGC 360
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      CAGGAGGAGTTCCGGGTGGTGGTGGCGCTGGCGCGCCGCCGCGGGGCGCTGTCGGCGGCG 420
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ------------------------------------------------------------
                                                                                   

consensus_11588#0      GCGGAGAAGATGGTGGGGGATTTCTACGAGCGCGCGGTGAAGGCGCTCGACGTGTGCAAC 480
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ----------------------------------TAATGCTATGTTTCATTTTGCTAAAT 26
                                                                                   

consensus_11588#0      GCCGCACGCGACGGCGTCGACCAGGTCAGGCGGTGGGAGCGGCTCGCCGGCATCGCGGCG 540
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      GATATCAATTAACCTGTGTATCAATTCCATAAATTGGATATAGCAATAAATAAATCAGCA 86
                                                                                   

consensus_11588#0      TCCGTGCTGCTCGCCCCAGGGGAGATCCACGAGGGCCAGCTCCGCCGCGCGCGGAAGGCG 600
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      AAATTCTTTTATTTTAGATAGAAGAAACTTTTCTTCTATCTAAAATAAA---AGAATGTA 143
                                                                                   

consensus_11588#0      CTCTCCGACCTCTCGGTGCTCCTCATCGACGACGCCGCGGCCGCCGCGGGTGGCGGCGGC 660
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      CCCTTCTATCCAAATCCAATTTGCATCGATAAAATAAATCCAAATTCCAGTAGTAGATGA 203
                                                                                   

consensus_11588#0      GTCGCCTCCTTCCTCTCCTCCCACCGCAACCGCTCCTTCGGCCGCGCCCGCGCGTCGCCC 720
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      ATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTT 263
                                                                                   

consensus_11588#0      TCCCGCTCCGCGACGCTCGCCTCCTCCTCATCCTCCTCGTCGTCGTCCTCCTCCTCCTCC 780
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      TTTATTTTTCCTGATCAGAAAAATACATGAAAAAGAAAGGAGGTAGAAAAATTTTTGGAT 323
                                                                                   

consensus_11588#0      CACTTCCGCTCGCTCTCGTGGAGCGTCTCCCGCAACTGGTCGGCGGCTAGGCAGCTGCAG 840
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      TTATGGTTAAAGAAGAAAAAGAAGAAAACTGGGGTTCTGTTGAATTTCAAGTA--TTCAG 381
                                                                                   

consensus_11588#0      GCCATCGGGTCCGGCCTGGCGGCGCCGCGCGCGCACGAGGGGGGACTCGTGGCGCCGGTG 900
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      TTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGAATTACACAAAAAAGATTTTTC 441
                                                                                   

consensus_11588#0      TACTCCATGGGCTGCCTGCTCCACCTCGCCGCGTGGGCCCTCGTCGCCGCCGTGCCGTGC 960
consensus_11588#2      -----------------------------------GTTGTTGGGCGAGGCGGGAACGA-- 23
consensus_11588#1      ATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCAACGTTTGCTGGCTTATTTGGC 501
                                                          *         *  *           

consensus_11588#0      CCGGACCGCGCCGCCGCGCTCCAGGCGCACCACCTCCCCGCCGCGCCGCC-GCGCGCCGC 1019
consensus_11588#2      CGGGGCTGGCGGGATGGGTTGTGGGT-TACGTATTCTCCATCTCGCTTCCTAAGGGCCGG 82
consensus_11588#1      AAAGAAAAATAGAGTACGTTATAAGA-AATTAATCAGTCAGTTGGATATTAGGGAGCGGT 560
                          *             * *    *   *         *     *        * ** * 

consensus_11588#0      GTTCCCAT-GGGCGCCGCCGCTGCTCGCGCTCCAGGAGCGCCTCACCGAGGAG--GGGAA 1076
consensus_11588#2      GTTCACGT-GTGGGTT-----CGGATGCGCCTCGGATTATTCCTGCCGAAGTG--AG--- 131
consensus_11588#1      AATTTCATCGTTCGAATTTTTTTTCTTATTTTATTAGTAGTCTTATAGTAGTCTTAGATT 620
                         *  * * *   *                           *     *  *     *   

consensus_11588#0      GCGCAAG--GACAGGCGCAACTCCTGCGGCCTCCTCAAGGAAATCCACGCGCTGGAGAAA 1134
consensus_11588#2      --GCACT--GACGGGTTCTGTTTGTCAGAAGTATTCGGACCCTTCTTCCCGATGAAAAAT 187
consensus_11588#1      TTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAATAATCCATTTTCATGGAATAA 680
                         ***    **   *      *     *   *  *         *       ** *  * 

consensus_11588#0      TGCACGCAGCGGCTCGCCGAGGCGATCGACGCCGCACCCGTCCCGCTCTCCGGTGAGCGC 1194
consensus_11588#2      TTTTTTTGTGGAATTCCAAAGGTAAA---------GCGAGTCTCCGCATCTGATTGGTG- 237
consensus_11588#1      TGAATTAAGGAAGAAAGGATATGAGTCTACCGCTTACAAGAAAAGATCTCATGATAGTC- 739
                       *                                   *  *        **      *   

consensus_11588#0      GAGGCCGAGGTACGGGAGGCCGCCGCCGAGCTGGCTGCCGTGTGCGCCGCCATGAGGGCC 1254
consensus_11588#2      -AAACGGAATCCTTGAAATTCGGCAGAGCCCCAGTTTTCTT------------------- 277
consensus_11588#1      -AATATGGGCCCTCAGCACCCATCAATGCA-TGGTGTTCTTCGACTG------------- 784
                        *    *             *  *   *     *    * *                   

consensus_11588#0      GGCCTTGAGCCTCTCGAAAGGCAGGTCAGGGAGGTGTTCCACCGCATTGTTCGCAGCCGC 1314
consensus_11588#2      ---CTTTTTCTTCTTTAACCATAAATCCAAAAATTTTTCTACCTCCTTTCTT----TTTC 330
consensus_11588#1      ---ATCGTTACTCTC-GATGGTGAAGATGTTATTGATTGTGAACCCATATTAGGCTATTT 840
                           *      ***   *             *    **      *  *  *         

consensus_11588#0      ATGGAGGGGCTCGATTCGCCGATGCTCAACGCCGATTGAAACATGGAGAATTCACATTTG 1374
consensus_11588#2      ATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTAT-TCTA 389
consensus_11588#1      ACACAGAGGAATGGAAAAAATCGGCAAATAGGAAAGCTACTTAGGCAGGAGATAG-GGGA 899
                       *   *       *              *          *   *    * *   *      

consensus_11588#0      ATCGCGCAATGTGGTGGTGATAGGTAATGCCGATCGAACCGTC-GAGAATTTGGATTTGA 1433
consensus_11588#2      ATCTCGTA-CACACAAAAATTTGCAATTATTCATCTA--CTAC-TGGAATTTGGATTTGA 445
consensus_11588#1      ATTCCTTAAGAAAGAAAAAAGAATAAGAACACAGATACATAACATAAAAAAAAGAATAAA 959
                       **  *  *                 *      *   *     *    **    ** *  *

consensus_11588#0      TCGCGCAAATGTGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTCACTTGTG 1493
consensus_11588#2      TCGCGCAAATGTGGTGGTTATAGGTAGCTCTCCTGTTCTTGGTTTTTTTCCTCACTTGTG 505
consensus_11588#1      TAAGACGAAATTCG-ACCTCCCCCTACATATTTAATTTCTTCTCCTATACAAAAACTAGC 1018
                       *    * **  * *    *     **  * *    **  *  *  * * *   *  *   

consensus_11588#0      GTGGTCTAGT--AGTAATTATAAAATGTGTGCCGTTCT-GTAAAGGAAGGGGGGAAAGGA 1550
consensus_11588#2      GTGGTCTAGT--AGTAATTATAAAATGTGTGCCGTTCT-GTAAAGGAAGGGGGGAAAGGA 562
consensus_11588#1      AAGACCTACTCCATTGGTAATTCCATCAATGACACCCTTGTCGAAAAACTGCGTTAGTTC 1078
                         *  *** *  * *  * **   **   ** *   ** **  *  **  * *  *    

consensus_11588#0      AAGGAACCATCTT-TATGTAAAG--ATGATTCCTTCTTCCCATGTTTTGATGCTGC---- 1603
consensus_11588#2      AAGGAACCATCTT-TATGTAAAG--ATGATTCCTTCTTCCCATGTTTTGATGCTGC---- 615
consensus_11588#1      GGTTAATCCTCTTATACCCAAGGTAAAGGTCCTAGTATAGAAAATATCTATATAACCGCG 1138
                           ** * **** **   ** *  * * * *     *   *  * *  **    *    

consensus_11588#0      ATTTGGTGTATATCATGGCATTTTTGTTAGTCCTCCATGTGTGCGCGGCTAATTCTGGGA 1663
consensus_11588#2      ATTTGGTGTATATCATGGCATTTTTGTTAAAAAAAAAAAAAA------------------ 657
consensus_11588#1      ATTATATGACCAACTATATATCTTTTTTTTTAGTTGATGGAAAAAATACTTTTTCGGACC 1198
                       ***   **   * *     ** *** **        *                       

consensus_11588#0      GTAACTTATAGTTGAAAAATCTGTGAGGTCGCTATGAAATGTGGCCTGTTGTCGAGAATG 1723
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      CCCTTTTACAAAGGAATTTATTAAATCCAAATTCTGAAAAAAAGAGTAAGCAGATCCATA 1258
                                                                                   

consensus_11588#0      TCGACAAAAAAATTAAACAAGAAAAAAAAATCTACTGTGGTTTAGTTCGATTGTGTTGTG 1783
consensus_11588#2      ------------------------------------------------------------
consensus_11588#1      AAACATATATGCTATGAATAGACCAAAAATAGCTAGACTTACAGAAGAAATTGCATTAGT 1318
                                                                                   

consensus_11588#0      TCATAATTCATGTTTGGTCCTGATATTTGGATGGTTTAATCAAAAGGTCAAATCTTGA 1841
consensus_11588#2      ----------------------------------------------------------
consensus_11588#1      GATAAATTCATATGAATTTATGGAAGAATTAGAACTT--------------------- 1355
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)