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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1160 cluster # 1160       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1160#0 length = 603 sequences # 1  
consensus_1160#1 length = 302 sequences # 1  

consensusID : consensus_1160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA]

[+] EMBL BM418709             [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA]


>consensus_1160#0 TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGT GCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCC GTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGG CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGA GTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCA GCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAAT TGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAA AAA



consensusID : consensus_1160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN]

[+] EMBL CF197403             [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN]


>consensus_1160#1 TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAA CCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAG TATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGA TGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGAT GCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATN NN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1160#0      TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGT 60
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      GCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCC 120
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      GTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGG 180
consensus_1160#1      ------------------------------------------TGATCGATTTCATCAGGG 18
                                                                ******************

consensus_1160#0      CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 240
consensus_1160#1      CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 78
                      ************************************************************

consensus_1160#0      AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 300
consensus_1160#1      AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 138
                      ************************************************************

consensus_1160#0      TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 360
consensus_1160#1      TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 198
                      ************************************************************

consensus_1160#0      TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGA 420
consensus_1160#1      TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGA 258
                      ***************************************************   ******

consensus_1160#0      GTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCA 480
consensus_1160#1      GTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN---------------- 302
                      ****   **************************     ***                   

consensus_1160#0      GCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAAT 540
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      TGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAA 600
consensus_1160#1      ------------------------------------------------------------
                                                                                  

consensus_1160#0      AAA 603
consensus_1160#1      ---
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)