These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA] [+] EMBL BM418709 [TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAAAAA] consensusID : consensus_1160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN] [+] EMBL CF197403 [TGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGAGTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1160#0 TTTCCCCAGGGGACGTGCCTTGTCCGAATTGCCTGGNCGTTTCTTGGGGGTTTCCCTGGT 60 consensus_1160#1 ------------------------------------------------------------ consensus_1160#0 GCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTCTGACCC 120 consensus_1160#1 ------------------------------------------------------------ consensus_1160#0 GTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGG 180 consensus_1160#1 ------------------------------------------TGATCGATTTCATCAGGG 18 ****************** consensus_1160#0 CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 240 consensus_1160#1 CCAGGGCATCTCAAGGAGCTTGATGAGTTCAGGCTGGTGAAACCGATGATTGGGCGATGG 78 ************************************************************ consensus_1160#0 AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 300 consensus_1160#1 AAGATGTTCTCTTCTTGTTTCTTCTTCTTTTTTTTTGTGGAGTATGCATGTATAAGATGT 138 ************************************************************ consensus_1160#0 TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 360 consensus_1160#1 TAATGAATTGGGGGGAGGAGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTG 198 ************************************************************ consensus_1160#0 TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGA 420 consensus_1160#1 TGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGNNNGGGTGA 258 *************************************************** ****** consensus_1160#0 GTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCA 480 consensus_1160#1 GTTGNNNGGTGAATTTCTGATGTACAGTACTACNNNNNGATNNN---------------- 302 **** ************************** *** consensus_1160#0 GCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAAT 540 consensus_1160#1 ------------------------------------------------------------ consensus_1160#0 TGCTTGTCAAGTGCTTCATTTGCGCATTGATTCAGTATTGCGTATCGATTCAAAGACCAA 600 consensus_1160#1 ------------------------------------------------------------ consensus_1160#0 AAA 603 consensus_1160#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||