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Oryza sativa
cluster # 11602 cluster # 11602       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11602#0 length = 1335 sequences # 2  
consensus_11602#1 length = 1241 sequences # 2  
consensus_11602#2 length = 1219 sequences # 2  
consensus_11602#3 length = 649 sequences # 2  
consensus_11602#4 length = 227 sequences # 1  

consensusID : consensus_11602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1335
fasta sequence
                              [CCAAGCCACACACACACGCAGTCAGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCT-GAAATACAT-GATGAGAG-AGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTTGAAGTTTGCCGGGACTCTTGTAGAGCCAGGCATAACAACTGATGAGATTGATAAAGCGGTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAGGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACATTATCAACATTGATGTTACTGTTTATCTCAATAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAGCTGGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAAATTTTGAGTAAAATTGGT]

[+] EMBL AK068344             [CCAAGCCACACACACACGCAGTCAGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCT GAAATACAT GATGAGAG AGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTTGAAGTTTGCCGGGACTCTTGTAGAGCCAGGCATAACAACTGATGAGATTGATAAAGCGGTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAGGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACATTATCAACATTGATGTTACTGTTTATCTCAATAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAGCTGGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAAATTTTGAGTAAAATTGGT]
[+] EMBL C74900               [                     tnAGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGNCGCGTATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGGAAATACATGGATGATAGNAGGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_11602#0 CCAAGCCACACACACACGCAGTCAGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGAC CTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGC CAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAG AACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGA TAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATAT ACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAAAT ACATGATGAGAGAGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTT GAAGTTTGCCGGGACTCTTGTAGAGCCAGGCATAACAACTGATGAGATTGATAAAGCGGT GCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCC AAGGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCC TCTTGAAGATGGTGACATTATCAACATTGATGTTACTGTTTATCTCAATAGAGTGTTTCT ATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAGCT GGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAA GAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGG GGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGG TGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGT GCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGA GCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGT GACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGG CGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTG ATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGAT CCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAAATT TTGAGTAAAATTGGT



consensusID : consensus_11602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1241
fasta sequence
                              [TTTTATTAGTGGTTTCTTACATGGTCATACACAAACAACTAGCCTTTCCTTTTCTTTTCAGAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAGCTGGTGATTACTTACCCTTCACTTGGTTTAGGATTTGTGCAACCCATGGTCGAGATAAGGCATGGAATTTTTATGTGTATTCTTAGTCCCATCTGTCTATGTACAGTTATTGATATGGTTACATGTCTACTGTGTGGTTCATTATTAGTATATTGCTTTGACTACAGTCACTTTCTGATTTTTTTCCCTCCAGTGCATATATATATTGTACTCATGTATTTGGTTCCAGGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTGACCTCAAGTTCTCAACAAATGTTTAGTTTTAACAATTAAGCAGTAAAGTACTATACGACTGAAAACCCGTTCTCATGCAGTTTGGAATGTAGTTCATTTCTAACCTATGAAATCTCATAGATGAACAATGCTATACCAAGTTATTTTTTTAATTCATCCACAAATTCAGGGGCAAAGCTCATGAAAGTTTCAGTCAAAGCAGCTACAGTAATAGATAATCATTGCTTCATGTTCAGAGTTTAGATTTTTTTTTTCGTCAAACAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAGGGGGTTGGACAAGTGTTTCATGGTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGTCATTGAACCAACCATTTCTTATAGAGCCCATGCTACCCGTGGGGAGGGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGATTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGGGATCCTGCCGCAGTGTTAAGGGCGGAGGAGGATTAGAGGGGAGTAATGCCAGTGATTTTATTTTTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAAGGTAAACTCATATTATTAAGATACCCTACAAAAATTTTGAGTAAAATTGGTT]

[+] EMBL CB648252             [TTTTATTAGTGGTTTCTTACATGGTCATACACAAACAACTAGCCTTTCCTTTTCTTTTCAGAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAGCTGGTGATTACTTACCCTTCACTTGGTTTAGGATTTGTGCAACCCATGGTCGAGATAAGGCATGGAATTTTTATGTGTATTCTTAGTCCCATCTGTCTATGTACAGTTATTGATATGGTTACATGTCTACTGTGTGGTTCATTATTAGTATATTGCTTTGACTACAGTCACTTTCTGATTTTTTTCCCTCCAGTGCATATATATATTGTACTCATGTATTTGGTTCCAGGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTGACCTCAAGTTCTCAACAAATGTTTAGTTTTAACAATTAAGCAGTAAAGTACTATACGACTGAAAACCCGTTCTCATGCAGTTTGGAATGTAGTTCATTTCTAACCTATGAAATCTCATAGATGAACAATGCTATACCAAGTTATTTTTTTAATTCATCCACAAATTCAGGGGCAAAGCTCATGAAAGTTTCAGTCAAAGCAGCTACAGTAATAGATAATCATTGCTTCATGTTCAGAGTTTAGATTTTTTTTTTCGTCAAACAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB648251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATGTAGTTCATTTCTAACCTATGAAATCTCATAGATGAACAATGCTATCCCAAGTTATTTTTTTAATTCATCCACAAATTCAGGGGCAAAGCTCATGAAAGTTTCAGTCAAAGCAGCTACAGTAATAGATAATCATTGCTTCATGTTCAGAGTTTAGATTTTTTTTTTCGTCAAACAGGTAACAAGAGAATGTCTCGACAAGGTTATATCAATTTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGCCCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAGGGGGTTGGACAAGTGTTTCATGGTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGTCATTGAACCAACCATTTCTTATAGAGCCCATGCTACCCGTGGGGAGGGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGATTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGGGATCCTGCCGCAGTGTTAAGGGCGGAGGAGGATTAGAGGGGAGTAATGCCAGTGATTTTATTTTTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAAGGTAAACTCATATTATTAAGATACCCTACAAAAATTTTGAGTAAAATTGGTT]


>consensus_11602#1 TTTTATTAGTGGTTTCTTACATGGTCATACACAAACAACTAGCCTTTCCTTTTCTTTTCA GAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGT GGCTGGACAGCTGGTGATTACTTACCCTTCACTTGGTTTAGGATTTGTGCAACCCATGGT CGAGATAAGGCATGGAATTTTTATGTGTATTCTTAGTCCCATCTGTCTATGTACAGTTAT TGATATGGTTACATGTCTACTGTGTGGTTCATTATTAGTATATTGCTTTGACTACAGTCA CTTTCTGATTTTTTTCCCTCCAGTGCATATATATATTGTACTCATGTATTTGGTTCCAGG GTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGA AATTAGTTCAGGTGACCTCAAGTTCTCAACAAATGTTTAGTTTTAACAATTAAGCAGTAA AGTACTATACGACTGAAAACCCGTTCTCATGCAGTTTGGAATGTAGTTCATTTCTAACCT ATGAAATCTCATAGATGAACAATGCTATACCAAGTTATTTTTTTAATTCATCCACAAATT CAGGGGCAAAGCTCATGAAAGTTTCAGTCAAAGCAGCTACAGTAATAGATAATCATTGCT TCATGTTCAGAGTTTAGATTTTTTTTTTCGTCAAACAGGTAACAAGAGAATGTCTCGACA AGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGG ACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCAGGGGGTTGGAC AAGTGTTTCATGGTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGT CATTGAACCAACCATTTCTTATAGAGCCCATGCTACCCGTGGGGAGGGTAAATCCAGTTA TATGGTCCGATGACTGGACAGCGGTGATTGAAGACGGCAGCTTGTCAGCACAGTTTGAGC ACACAATACTGATTACAGAGGATGGCGCGGGGATCCTGCCGCAGTGTTAAGGGCGGAGGA GGATTAGAGGGGAGTAATGCCAGTGATTTTATTTTTATAAGTGGCTGGCTGGAGATGGAA TCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAAGGTAAACTCAT ATTATTAAGATACCCTACAAAAATTTTGAGTAAAATTGGTT



consensusID : consensus_11602#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1219
fasta sequence
                              [ACACGCCCTTTGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAAATACATGATGAGAGAGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTTGAAGTTTGCCGGGACTCTTGTAGAGGCATAACAACTGATGAGATTGATAAAGCGGTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAAGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACATTATCCACATTGATGTTACTGTTTATCTCAATGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCCTAATGTAAACNTCATATTACTAAGGA]

[+] EMBL CB653844             [ACACGCCCTTTGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAAATACATGATGAGAGAGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTTGAAGTTTGCCGGGACTCTTGTAGAGGCATAACAACTGATGAGATTGATAAAGCGGTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAAGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACATTATCCACATTGATGTTACTGTTTATCTCAATGGTTACCACGGTGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB653845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAACTGATGAGATGNATAAAGCGGTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAAGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACATTATCAACATTGATGTTACTGTTTATCTCAATGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCCTAATGTAAACNTCATATTACTAAGGA]


>consensus_11602#2 ACACGCCCTTTGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGACCTCGTCGTCGCCG CGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGCCAGGCCGCTCCTC CGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAGAACGCTCTGCAAC CTGGTGGATATCCTCTTCAACAGAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGC CTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCA TATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAAATACATGATGAGAGA GGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTTTTGAAGTTTGCCGGG ACTCTTGTAGAGGCATAACAACTGATGAGATTGATAAAGCGGTGCACCAAATGATAGTAG ATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTTCCAAAGAGTGTCTGCACCT CAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGTCCTCTTGAAGATGGTGACA TTATCCACATTGATGTTACTGTTTATCTCAATGGTTACCACGGTGATACATCTGCTACAT TTCTATGTGGTAATGTTGATGACAAAGCTAAGAAATTAGTTCAGGTAACAAGAGAATGTC TCGACAAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTA TACAGGACCATGCAGATAAATTCAAGTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGG TTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAAACAATGAATGGGGCC GTATGACATTGAACCAAACATTTACTATAGAGCCCATGCTAACCGTGGGGAGCGTAAATC CAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGT TTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGC GGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAG ATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCCTAATGTA AACNTCATATTACTAAGGA



consensusID : consensus_11602#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence
                              [GGTACATGTTTCCAATGTGCACATAGCATGGTTATTTTTTCTACCAACTTGTGACTGTGACACGTATAATTATAACTATACCTATTCTCCGAAATCTATTGTGCACATAAATTCAAACAATGATACTTAAGCTGAAACTGATGCAACTACTATGCAGGAGTAATTTACCAATTAATTTCTGTTGATTTGCTAGCAAGAAGCCCTGGAACACTTAGAAATGATGATATCATGTCTTAGACTATTGTCTTCTGAAGTTTTTTCGTGAAGCATGTAAAGCTGACAACCTCCCCATTCTTTTTTTTATTAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGG-ACAGCGGTGACTGAAGACGGCAGCTTGTCAGCAC-AGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAAATTTTGAGTAAAATTGGTTTTAGAAGTCAAAAAAAAAAAAAAAC]

[-] EMBL CF307492             [GGTACATGTTTCCAATGTGCACATAGCATGGTTATTTTTTCTACCAACTTGTGACTGTGACACGTATAATTATAACTATACCTATTCTCCGAAATCTATTGTGCACATAAATTCAAACAATGATACTTAAGCTGAAACTGATGCAACTACTATGCAGGAGTAATTTACCAATTAATTTCTGTTGATTTGCTAGCAAGAAGCCCTGGAACACTTAGAAATGATGATATCATGTCTTAGACTATTGTCTTCTGAAGTTTTTTCGTGAAGCATGTAAAGCTGACAACCTCCCCATTCTTTTTTTTATTAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGG ACAGCGGTGACTGAAGACGGCAGCTTGTCAGCAC AGTTTGAGCACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAATGATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAAATTTTGAGTAAAATTGGTTTTAGAAGTCAAAAAAAAAAAAAAAC]
[+] EMBL BI812699             [                                                                                                                                                                                                                                                                                                                       CATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGAACA CGGTGACTGAAGAC GCAGCTTGTCAGCACAAGTTTGA CACACAATACTGATTACAGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGAC AATGATCC ACTTGAAGTTCC AACCCTAATGTAAACTCATATTACTAAGATAACCTAC AAAATTTTGAGTAAAATTGGTTTTAGAAGTCAAAAAA          ]


>consensus_11602#3 GGTACATGTTTCCAATGTGCACATAGCATGGTTATTTTTTCTACCAACTTGTGACTGTGA CACGTATAATTATAACTATACCTATTCTCCGAAATCTATTGTGCACATAAATTCAAACAA TGATACTTAAGCTGAAACTGATGCAACTACTATGCAGGAGTAATTTACCAATTAATTTCT GTTGATTTGCTAGCAAGAAGCCCTGGAACACTTAGAAATGATGATATCATGTCTTAGACT ATTGTCTTCTGAAGTTTTTTCGTGAAGCATGTAAAGCTGACAACCTCCCCATTCTTTTTT TTATTAGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGG ACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACA GAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAA TGACAGTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGA CAAATGATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTA CAAAAATTTTGAGTAAAATTGGTTTTAGAAGTCAAAAAAAAAAAAAAAC



consensusID : consensus_11602#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence
                              [GCTCAGCTCGCCCCCATGGCGACCTCGTNGTCGCCGCGCCTGCTCTCCTCCTTCCTNGGCGACCGCCTCCTCTCCGCCAGCGCCAGGNCGCTCNTNCGCGGGGCCGNTNCAGGAAGAAGGCGGGCCGNGTATCAGGCGACGAGAACGNTCTNNAACCTGGTGGATATCCTNTTCAANAGAGGTCANANTTANAAACCGGAAGATAACCCTAGACGNCTANGGTCTNG]

[+] EMBL AU067906             [GCTCAGCTCGCCCCCATGGCGACCTCGTNGTCGCCGCGCCTGCTCTCCTCCTTCCTNGGCGACCGCCTCCTCTCCGCCAGCGCCAGGNCGCTCNTNCGCGGGGCCGNTNCAGGAAGAAGGCGGGCCGNGTATCAGGCGACGAGAACGNTCTNNAACCTGGTGGATATCCTNTTCAANAGAGGTCANANTTANAAACCGGAAGATAACCCTAGACGNCTANGGTCTNG]


>consensus_11602#4 GCTCAGCTCGCCCCCATGGCGACCTCGTNGTCGCCGCGCCTGCTCTCCTCCTTCCTNGGC GACCGCCTCCTCTCCGCCAGCGCCAGGNCGCTCNTNCGCGGGGCCGNTNCAGGAAGAAGG CGGGCCGNGTATCAGGCGACGAGAACGNTCTNNAACCTGGTGGATATCCTNTTCAANAGA GGTCANANTTANAAACCGGAAGATAACCCTAGACGNCTANGGTCTNG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11602#2      -------------ACACGCCCTTTGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGAC 47
consensus_11602#4      -------------------------------------GCTCAGCTCGCCCCCATGGCGAC 23
consensus_11602#0      CCAAGCCACACACACACGCAGTCAGGGAGTCCCTTCCGCTCAGCTCGCCCCCATGGCGAC 60
consensus_11602#1      ------------------------------------------------------------
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      CTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGC 107
consensus_11602#4      CTCGTNGTCGCCGCGCCTGCTCTCCTCCTTCCTNGGCGACCGCCTCCTCTCCGCCAGCGC 83
consensus_11602#0      CTCGTCGTCGCCGCGCCTGCTCTCCTCCTTCCTCGGCGACCGCCTCCTCTCCGCCAGCGC 120
consensus_11602#1      -TTTTATTAGTGGTTTCTTACATGGTCATACACAAACAACTAGCCTTTCCTTTTCTTT-T 58
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      CAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAG 167
consensus_11602#4      CAGGNCGCTCNTNCGCGGGGCCGNTNCAGGAAGAAGGCGGGCCGNGTATCAGGCGACGAG 143
consensus_11602#0      CAGGCCGCTCCTCCGCGGGGCCGCTCCAGGAAGCAGGCGGGCCGCGTATCAGGCGACGAG 180
consensus_11602#1      CAGAGAGTGTTTCTATGCATCTCCTCCTTATATTTGCATAAATGT-CAAAGTATGACAAT 117
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      AACGCTCTGCAACCTGGTGGATATC--CTCTTCAACAGAGGTCAGAGTGACAAACCGGAA 225
consensus_11602#4      AACGNTCTNNAACCTGGTGGATATC--CTNTTCAANAGAGGTCANANTTANAAACCGGAA 201
consensus_11602#0      AACGCTCTGCAACCTGGTGGATATC--CTCTTCAACAGAGGTCAGAGTGACAAACCGGAA 238
consensus_11602#1      GGTGGCTGGACAGCTGGTGATTACTTACCCTTCACTTGGTTTAGGATTTGTGCAACCCAT 177
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      GATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACAT 285
consensus_11602#4      GATAACCCTAGACGNCTANGGTCTNG---------------------------------- 227
consensus_11602#0      GATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACAT 298
consensus_11602#1      GGTCGAGATAAGGCATGGAATTTTTATGTGTATTCTTAGTCCCATCTGTCTATGTACAGT 237
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      ATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAA 345
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      ATACAGCGGCCACCATATGTCAATGCTCGTCAAAGACCTGGATTGCACAATGGACCTGAA 358
consensus_11602#1      TATTGATATGGTTACATGTCTACTGTGTGGTTCATTATTAGTATATTGCTTTGACTACAG 297
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      ATACATGATGAGAGAGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTT 405
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      ATACATGATGAGAGAGGGATCGAATGCATGAGGGCTTCTGGAAAGCTTGCTGCACAAGTT 418
consensus_11602#1      TCACTTTCTGATTTTTTTCCCTCCAGTGCATATATATATTGTACTCATGTATTTGGTTCC 357
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      TTGAAGTTTGCCGGGACTCTTGTAGAG----GCATAACAACTGATGAGATTGATAAAGCG 461
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      TTGAAGTTTGCCGGGACTCTTGTAGAGCCAGGCATAACAACTGATGAGATTGATAAAGCG 478
consensus_11602#1      AGGGTTACCACGGTGATACATCTGCTA----CATTTCTATGTGGTAATGTTGATGACAAA 413
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      GTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTT 521
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GTGCACCAAATGATAGTAGATAATGGAGCATACCCTTCGCCACTTGGTTATTGCGGTTTT 538
consensus_11602#1      GCTAAGAAATTAGTTCAGGTGACCTCAAGTTCTCAACAAATGTTTAGTTTTAACAATTAA 473
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      CCAAAGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGT 581
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      CCAAGGAGTGTCTGCACCTCAGTGAATGAGTGCATCTGTCATGGTATACCTGATTCTCGT 598
consensus_11602#1      GCAGTAAAGTACTATACGACTGAAAACCCGTTCTCATGCAGTTTGGAATGTAGTTCATTT 533
consensus_11602#3      ------------------------------------------------------------
                                                                                   

consensus_11602#2      CCTCTTGAAGATGGTGACATTATCCACATTGATGTTACTGTTTATCTCAAT--------- 632
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      CCTCTTGAAGATGGTGACATTATCAACATTGATGTTACTGTTTATCTCAATAGAGTGTTT 658
consensus_11602#1      CTAACCTATGAAATCTCATAGATGAACAATGCTATACCAAGTTATTTTTTTAATTCATCC 593
consensus_11602#3      --------------------------------------GGTACATGTTTCCAATGTGCAC 22
                                                                                   

consensus_11602#2      ------------------------------------------------------------
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      CTATGCATCTCCTCCTTATATTTGCATAAATGTCAAAGTATGACAATGGTGGCTGGACAG 718
consensus_11602#1      ACAAATTCAGGGGCAAAGCTCATGAAAGTTTC---------------------------- 625
consensus_11602#3      ATAG---CATGGTTATTTTTTCTACCAACTT----------------------------- 50
                                                                                   

consensus_11602#2      ---GGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCT 689
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      CTGGGTTACCACGGTGATACATCTGCTACATTTCTATGTGGTAATGTTGATGACAAAGCT 778
consensus_11602#1      --AGTCAAAGCAGCTACAGTAATAGATAATCATTGCTTCATGTTCAGAGTTTAGATTTTT 683
consensus_11602#3      ---------GTGACTGTGACA-CGTATAATTATAACT--ATACCTATTCTCCGAAATCTA 98
                                                                                   

consensus_11602#2      AAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCT 749
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      AAGAAATTAGTTCAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCT 838
consensus_11602#1      TTTTTCGTCAAACAGGTAACAAGAGAATGTCTCGACAAGGCTATATCAATCTGCGCCCCT 743
consensus_11602#3      TTGTGC-----ACATAAATTCAAACAATGATAC--TTAAGCTGAA---ACTGATGCAACT 148
                                                                                   

consensus_11602#2      GGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTT 809
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTT 898
consensus_11602#1      GGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAAGTTT 803
consensus_11602#3      ACTATGCAGGAGTAATTTACCAATTAATTTCTGTTGATT--TGCTAGCAAG--AAGCCCT 204
                                                                                   

consensus_11602#2      GGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTG 869
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTG 958
consensus_11602#1      GGTGTAGTTCGACAGTTCGTCGGTCAGGGGGTTGGACAAGTGTTTCATGGTGAACCTGTG 863
consensus_11602#3      GGAACACTTAGAAA--TGATGATATCATGTCTTAGACTATTGTCTTCTGAAG-------- 254
                                                                                   

consensus_11602#2      GTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTAT- 928
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTAT- 1017
consensus_11602#1      GTGCTTCATTTCCGAAACAATGAATGGGGCCGTATGTCATTGAACCAACCATTTCTTAT- 922
consensus_11602#3      ----TTTTTTCGTGAAGCAT---GTAAAGCTGACAACCTCCCCATT--CTTTTTTTTATT 305
                                                                                   

consensus_11602#2      AGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGC 988
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      AGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGC 1077
consensus_11602#1      AGAGCCCATGCTACCCGTGGGGAGGGTAAATCCAGTTATATGGTCCGATGACTGGACAGC 982
consensus_11602#3      AGAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGC 365
                                                                                   

consensus_11602#2      GGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGA 1048
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGA 1137
consensus_11602#1      GGTGATTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGA 1042
consensus_11602#3      GGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAATACTGATTACAGAGGA 425
                                                                                   

consensus_11602#2      TGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACA 1108
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      TGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACA 1197
consensus_11602#1      TGGCGCGGGGATCCTGCCGCAGTGTTAAGGGCGGAGGAGGATTAGAGGGGAGTAATGCCA 1102
consensus_11602#3      TGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACA 485
                                                                                   

consensus_11602#2      GTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAAT 1168
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAAT 1257
consensus_11602#1      GTGATTTTATTTTTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAAT 1162
consensus_11602#3      GTGATTCTATTTCTATAAGTGGCTGGCTGGAGATGGAATCCTACATTTTTTTGGACAAAT 545
                                                                                   

consensus_11602#2      GATCCAACTTGAAGTTCCAAACCCCTAATGTAAACNTCATATTACTAAGGA--------- 1219
consensus_11602#4      ------------------------------------------------------------
consensus_11602#0      GATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAA 1317
consensus_11602#1      GATCCAACTTGAAGTTCCAAACCCTAAGGTAAACTCATATTATTAAGATACCCTACAAAA 1222
consensus_11602#3      GATCCAACTTGAAGTTCCAAACCCTAATGTAAACTCATATTACTAAGATAACCTACAAAA 605
                                                                                   

consensus_11602#2      --------------------------------------------
consensus_11602#4      --------------------------------------------
consensus_11602#0      ATTTTGAGTAAAATTGGT-------------------------- 1335
consensus_11602#1      ATTTTGAGTAAAATTGGTT------------------------- 1241
consensus_11602#3      ATTTTGAGTAAAATTGGTTTTAGAAGTCAAAAAAAAAAAAAAAC 649
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)