|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 782 fasta sequence
[TTTTTTTTTTATAAAAATATTGACAGCAGGGTTTCACTTGCATTATGTTTCTCGGTAGATACCGTGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC-AATGTCCAT-GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCA-GGCATAGCGGTCTAGTTTTTAACTCC-GGAATCCCACTCAGCTTCAC-GATAGA-GCAGTTTCGAC-GGTTTG-AT-GAA--GGAAACC--GGGAGGC-GACATT-GGT-GGCAT-CGCT-TC-TTCCT-GGGCATCAA-CCA-TTTCTAGG---AT-CTTT-C--TTA-CTGTGGCTTGCAAA-TGATCACCT-TGGGTTATATTTGGATGAATAGACTCCTTGTTTTTGAGATCCGTATTTGATGACTTAAATTT--T-GCATGCGCTTTTGCTGAAGTTACCGCGGTGGTGAATACGCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATAGGTATCTTTGTCGTTCCATAAAACATGTTCCCGGAACTAGTTCCTCATTTCCTCCTCGGTAGCTGTTGATGCAATTATAAAGGCCAATCTGTCAAATTCCAAGATAAAACATCGCTTCACATCTTCCTTTGTGGGCTTGCAAGCGGC]
[-] EMBL BI800227 [TTTTTTTTTTATAAAAATATTGACAGCAGGGTTTCACTTGCATTATGTTTCTCGGTAGATACCGTGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC AATGTCCAT GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGC TACGCAGTCTGCAGTCTATAATAATCTC ]
[+] EMBL C28351 [ TCGGTAGATACCGTGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC AATGTCCAT GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGC NGCATAGCGGTCTAGTTTTTAACTCC GGAATCCCACTCAGCTTCAC GNTAGA GCAGTTTCGAC GGTTTG AT GAG GGAAACC GGGAGGC GACATT GGT GGCAT CGCT TC TTCCT GGGCATCAA CCA TTTCTAGG NTCCTTTCC TTA CTGTGGGTTGCAAA TGATCACCC TNGGGTATATTTTGGTGAATAGAC ]
[+] EMBL C71928 [ GATACCGTGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTAATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC AATGTCCAT GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCA GGCATAGCGGTCTAGTTTTTAACTCCGGGAATCCCACTCAGCTTCACGGATAGAGGCAGTTTCGACGGGTTTGNATGGAAGGGGAAACCCGGGGAGGCGGACATTGGGTGGGCATCCGCT TCTTTCCTGGGGCATCAANCCATTTTCTAGGGGNGT CTTT CCTTTACCTGGGGggct ]
[-] EMBL AU166385 [ tttttTAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC AATGTCCAT GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCA GGCATAGCGGTCTAGTTTTTAACTCC GGAATCCCACTCAGCTTCAC GATAGA GCAGTTTCGAC GGTTTG AT GAA GGAAACC GGGAGGC GACATT GGT GGCAT CGCT TC TTCCT GGGCATCAA CCA TTTCTAGG AT CTTT C TTA CTGNGGCTTGCAAA TGATCACCT TGGGTTATATTTGGATGAATAGA ]
[-] EMBL CA998779 [ ATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATAC AATGTCCAT GTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCA GGCATAGCGGTCTAGTTTTTAACTCC GGAATCCCACTCAGCTTCAC GATAGA GCAGTTTCGAC GGTTTG AT GAA GGAAACC GGGAGGC GACATT GGT GGCAT CGCT TC TTCCT GGGCATCAA CCA TTTCTAGG AT CTTT C TTA CTGTGGCTTGCAAA TGATCACCT TGGGTTATATTTGGATGAATAGACTCCTTGTTTTTGAGATCCGTATTTGATGACTTAAATTT T GCATGCGCTTTTGCTGAAGTTACCGCGGTGGTGAATACGCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATAGGTATCTTTGTCGTTCCATAAAACATGTTCCCGGAACT ]
[-] EMBL BI797259 [ TCGGCACAAGACATCAAAAATGGGAAGATTATACNAAGGTCCATGGTTCTAACATCCCCAGGGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTGGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCA TGGCAGGGCATAGCGGTCTAGTTTTTAACTCC GGAATCCCACTCAGCTTCAC GATAGA GCAGTTTCGAC GGTTTG AT GAA GGAAACC GGGAGGC GACATG GGT GGCAT CGCTGTC TTCCTGGGGCATCAA CCA TTTCTAGG AT CTTT C TTA CGGTGGCTTGCAAAGTGACCACCTGGGGGTTATATTGGGATGAATAGACTCC TGGTTTAGAGATCCGTATTGGATGACTTAAATTT TGGCATGCGCT ]
[-] EMBL AU225857 [ GAATCCCACTCAGCTTCAC GATAGA GCAGTTTCGAC GGTTTG AT GAA GGAAACC GGGAGGC GACATT GGTGGGCAT CGCT TC TTCCT GGGCATCAA CCA TTTCTAGG AT CTTT C TTA CTGTGGCTTGCAAA TGATCACCT TGGGTTATATTTGGATGAATAGACTCCTTGTTTTTGAGATCCGTATTTGATGACTTAAATTTAAA GCATGCGCTTTTGCTGAAGTTACCGCGGTGGTGAATACGCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGTTCCATAAAACATGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGTAGCTGTTGATGCAATTATAAAGGCCAATCTGTCAAATTCCAAGATAAAACATCGCTTCACATCTTCCTTTGTGGGCTTGCAAGCGGC]
consensusID : consensus_11614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTTTTTGGTTCTCGGTAAATACCGGGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGGCATCAAAAATTGTCCATGTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGCCTAGTTTTTAACTCCGGAACCCCACTCAGCTTCACGATAGAGCAGTTTCGACGGTTTGATGAAGGAAACCGGGAGGCGACATTGGTGGCATCGCTTCTTCCTGGGCATCAACCATTTCTAGGATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAGACTCCTTGTTTTTGAAATCCGTATTTGATGACTTCAATTTTGCATGCGCTTTTGCTGAAGTTACCGCGGTGGTGAATACTCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGATCCATAAAACATGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGAAGCTGNTGATGCCCCCTTGTCTCGTCCTCTGGATCAAG]
[+] EMBL CA759923 [TTTTTTTTTTTTTTTTTTTTGGTTCTCGGTAAATACCGGGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCAGCACAAGGCATCAAAAATTGTCCATGTTCTAACATCCCCAGTGCTTATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGCCTAGTTTTTAACTCCGGAACCCCACTCAGCTTCACGATAGAGCAGTTTCGACGGTTTGATGAAGGAAACCGGGAGGCGACATTGGTGGCATCGCTTCTTCCTGGGCATCAACCATTTCTAGGATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAGACTCCTTGTTTTTGAAATCCGTATTTGATGACTTCAATTTTGCATGCGCTTTTGCTGAAGTTACCGCGGTGGTGAATACTCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGATCCATAAAACATGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGAAGCTGNTGATGCCCCCTTGTCTCGTCCTCTGGATCAAG]
consensusID : consensus_11614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TCTTTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCTGAAGATTTGCACTTGATAATGCCAATCTAGGGATAACATATGGGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATACAATGGCCATGTTCTAACATCCCCAGGGCTTATCTATACACATAAGTGAAGCGGCATACCCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGGTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGTCTAGTTTTTAACTCCGGAATCCCACTCAGCTTCACAAAAAAACAGTTTCCACGGTTTGATGAAGGAAACCGGGAGGCGACATTGGGGGCATCCCTTCTTCCTGGGCATCAACCATTTCTAGGATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAAACTCCTTGTTTTTGAAATCCGTATTTGATGACTTAAATTTTGCATGCGCTTTTGCTGAAGTTACCGCGGGGGGGAATACCCCGGATTCCTTGAAACCACAAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGTTCCATAAAACATGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGTAGCTGTTGAT]
[+] EMBL CB669081 [TCTTTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCTGAAGATTTGCACTTGATAATGCCAATCTAGGGATAACATATGGGATTTTACATCAGCACAAGACATCAAAAATTGCAAGATTATACAATGGCCATGTTCTAACATCCCCAGGGCTTATCTATACACATAAGTGAAGCGGCATACCCAGTCTGCAGTCTATAATAATCTCATCATCTTTGTAAGGGTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGTCTAGTTTTTAACTCCGGAATCCCACTCAGCTTCACAAAAAAACAGTTTCCACGGTTTGATGAAGGAAACCGGGAGGCGACATTGGGGGCATCCCTTCTTCCTGGGCATCAACCATTTCTAGGATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAAACTCCTTGTTTTTGAAATCCGTATTTGATGACTTAAATTTTGCATGCGCTTTTGCTGAAGTTACCGCGGGGGGGAATACCCCGGATTCCTTGAAACCACAAATGATAGCCATTGGGGCATATATGCGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGTTCCATAAAACATGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGTAGCTGTTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11614#0 TTTTTTTTTTATAAAAATATTGACAGCAGGGTTTCACTTGCATTATGTTTCTCGGTAGAT 60
consensus_11614#1 --------------------------TTTTTTTTTTTTTTTTTTTTGGTTCTCGGTAAAT 34
consensus_11614#2 --------------------TCTTTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40
*** ** ** * ** * * *
consensus_11614#0 ACCGTGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCA 120
consensus_11614#1 ACCGGGATGATTTGCACTTGATAATGCCAATCTAGGTATAACATATGTGATTTTACATCA 94
consensus_11614#2 ACCCTGAAGATTTGCACTTGATAATGCCAATCTAGGGATAACATATGGGATTTTACATCA 100
*** ** **************************** ********** ************
consensus_11614#0 GCACAAGACATCAAAAATTGCAAGATTATACAATGTCCATGTTCTAACATCCCCAGTGCT 180
consensus_11614#1 GCACAAGGCATCAAAAATTG---------------TCCATGTTCTAACATCCCCAGTGCT 139
consensus_11614#2 GCACAAGACATCAAAAATTGCAAGATTATACAATGGCCATGTTCTAACATCCCCAGGGCT 160
******* ************ ******************** ***
consensus_11614#0 TATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATC 240
consensus_11614#1 TATCTATACACATAAGTGAAGCGGCATACGCAGTCTGCAGTCTATAATAATCTCATCATC 199
consensus_11614#2 TATCTATACACATAAGTGAAGCGGCATACCCAGTCTGCAGTCTATAATAATCTCATCATC 220
***************************** ******************************
consensus_11614#0 TTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGTCT 300
consensus_11614#1 TTTGTAAGGTTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGCCT 259
consensus_11614#2 TTTGTAAGGGTAGCGATCTTAAATCACCGAAACAGCTGCCATTGGCAGGCATAGCGGTCT 280
********* *********************************************** **
consensus_11614#0 AGTTTTTAACTCCGGAATCCCACTCAGCTTCACGATAGAGCAGTTTCGACGGTTTGATGA 360
consensus_11614#1 AGTTTTTAACTCCGGAACCCCACTCAGCTTCACGATAGAGCAGTTTCGACGGTTTGATGA 319
consensus_11614#2 AGTTTTTAACTCCGGAATCCCACTCAGCTTCACAAAAAAACAGTTTCCACGGTTTGATGA 340
***************** *************** * * * ******* ************
consensus_11614#0 AGGAAACCGGGAGGCGACATTGGTGGCATCGCTTCTTCCTGGGCATCAACCATTTCTAGG 420
consensus_11614#1 AGGAAACCGGGAGGCGACATTGGTGGCATCGCTTCTTCCTGGGCATCAACCATTTCTAGG 379
consensus_11614#2 AGGAAACCGGGAGGCGACATTGGGGGCATCCCTTCTTCCTGGGCATCAACCATTTCTAGG 400
*********************** ****** *****************************
consensus_11614#0 ATCTTTCTTACTGTGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAGACTCC 480
consensus_11614#1 ATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAGACTCC 439
consensus_11614#2 ATCTTTCTTACTGGGGCTTGCAAATGATCACCTTGGGTTATATTTGGATGAATAAACTCC 460
************* **************************************** *****
consensus_11614#0 TTGTTTTTGAGATCCGTATTTGATGACTTAAATTTTGCATGCGCTTTTGCTGAAGTTACC 540
consensus_11614#1 TTGTTTTTGAAATCCGTATTTGATGACTTCAATTTTGCATGCGCTTTTGCTGAAGTTACC 499
consensus_11614#2 TTGTTTTTGAAATCCGTATTTGATGACTTAAATTTTGCATGCGCTTTTGCTGAAGTTACC 520
********** ****************** ******************************
consensus_11614#0 GCGGTGGTGAATACGCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATG 600
consensus_11614#1 GCGGTGGTGAATACTCCGGATTCCTTGAGACCACGAATGATAGCCATTGGGGCATATATG 559
consensus_11614#2 GCGGGGGGGAATACCCCGGATTCCTTGAAACCACAAATGATAGCCATTGGGGCATATATG 580
**** ** ****** ************* ***** *************************
consensus_11614#0 CGTGTCAACACACCCTTCCTCAAAAGCTTCAAATAGGTATCTTTGTCGTTCCATAAAACA 660
consensus_11614#1 CGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGATCCATAAAACA 619
consensus_11614#2 CGTGTCAACACACCCTTCCTCAAAAGCTTCAAATTGGTATCTTTGTCGTTCCATAAAACA 640
********************************** ************* ***********
consensus_11614#0 TGTTCCCGGAACTAGTTCCTCATTTCCTCCTCGGTAGCTGTTGATGCAATTATAAAGGCC 720
consensus_11614#1 TGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGAAGCTGNTGATGCCCCCTT---GTCT 676
consensus_11614#2 TGTTCCCGGAACCAGTTCCTCATTTCCTCCTCGGTAGCTGTTGAT--------------- 685
************ ********************* ***** ****
consensus_11614#0 AATCTGTCAAATTCCAAGATAAAACATCGCTTCACATCTTCCTTTGTGGGCTTGCAAGCG 780
consensus_11614#1 CGTCCTCTGGAT--CAAG------------------------------------------ 692
consensus_11614#2 ------------------------------------------------------------
consensus_11614#0 GC 782
consensus_11614#1 --
consensus_11614#2 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||