|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1273 fasta sequence
[TCCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCA-GGCAGA-TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC-AATCCATTTTATGGTG-CGAGCTCAGGTCTAATTAAAACT-GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT-GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC-GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTTTGTTTATAGAAAAAA]
[+] EMBL OS0946A [TCCGCTCGAAGAAATCGAAGCCGCGCTNCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCNCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTNCCCCCCTCCTCGCGGCG GCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCAGCCGCA GGCAGA TGCCCTCGGCAAATCCTCAGCCTGGGCAATTTGGCAAATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTT CAGTTCGGAATT ATG AAAG AATAT ]
[+] EMBL AU062388 [ CCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCA GGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTGNGGAGCTCAGGTCTAATTAAAAAT GGGGTAGGAGCATATGGAGAGAAGTTCCTTGGTTC ]
[+] EMBL AK100494 [ CGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGCTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAA ]
[+] EMBL CA755459 [ CCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGGTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATTAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTATGGACATC ATGCACCGGATCTTTACATCCCTTTCATGGGATTCGGTAGCTTCCTTA TCTTGCGGGGCTTTA ]
[+] EMBL C28636 [ CTCCGCCTCCGCCTCCNATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTNAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCNAGGGGGCCGACCTCCTTCTAGCNATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCGGCCGCA GGCAGATTGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTNATGGTG CGAGCTCAGGTCTAATTAAAACTGGGGTTAGG ]
[-] EMBL CB683961 [ CCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATATGGGTAAAATATATATA ]
[-] EMBL CF331697 [ GGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTaaaaaa ]
[+] EMBL AU172314 [ GGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTNTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTTTGTTTATAGAAAAAA]
consensusID : consensus_11621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGCTAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTATTAGTTTTGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG]
[+] EMBL CF331698 [AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGCTAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTATTAGTTTTGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11621#0 TCCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCG 60
consensus_11621#1 -----------AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCG 49
*************************************************
consensus_11621#0 GCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTT 120
consensus_11621#1 GCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTT 109
***************** ******************************************
consensus_11621#0 TCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAG 180
consensus_11621#1 TCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAG 169
************************************************************
consensus_11621#0 GGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATG 240
consensus_11621#1 GGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATG 229
************************************************************
consensus_11621#0 CCTCCTATAGGGCAGATGCCTCCTGCCGCAGG-CAGATGCCCTCGGCAAATCCTCAGCCT 299
consensus_11621#1 CCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCT 289
******************************** ***************************
consensus_11621#0 GGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGA 359
consensus_11621#1 GGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGA 349
************************************************************
consensus_11621#0 GCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGA 419
consensus_11621#1 GCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGC 409
*************************************************** * * **
consensus_11621#0 TACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG 479
consensus_11621#1 TAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTA----TTAGTTT 465
** * ** * ** * * * * * ** *** * * ** *
consensus_11621#0 AAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTT 539
consensus_11621#1 --TGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACC 523
** * *** ** * * * ** * * * * **
consensus_11621#0 GGTGGC-CGACTGTCGTACAAACCTCCAATCTATGACATCAATGCACCGGATCTTTACAT 598
consensus_11621#1 CGCAGTACTATTTCCATGTGAATGATCAGT--ATGTCAGGAACAAGCTG----------- 570
* * * * * * * ** ** * *** ** ** * *
consensus_11621#0 CCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGCGGGCTTTACATTAGGTTTCATGGG 658
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 AAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTT 718
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 GCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCT 778
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 CGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAG 838
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 GCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGT 898
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 GTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCA 958
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 CTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTT 1018
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 CTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATA 1078
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 GTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTG 1138
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 TGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAA 1198
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 GTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTT 1258
consensus_11621#1 ------------------------------------------------------------
consensus_11621#0 TGTTTATAGAAAAAA 1273
consensus_11621#1 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||