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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1040 fasta sequence
[TGTTTGGAACGTTTTTCAAAGTTCCCCTCCCCAAGGGGAATCGCGGGGCAAGAACCAAACCCTGGTGTTCACGAGACCCTTTAAAAGGTCACCTCCCCCGCAGAGTGGGGTACCCGGAGGGTTTTCACCCCCTCAAATTGAGCCCACCCTGAGGCCAAGNAGAAGAAGCTCGCCAACGGGAGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTTTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTT-CAGGCTGGTGAAACCGATGATTGG-GCGAT-GGAAGATGTTCTCTTCTTGTTTCTT--CTTTTTTTTTTT-GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA-------AAAAAAAAAAAAAAAAAAAACTCAAGACTAGTTCTCTCCTTCGGCCGGGGCCGTGGCCACGCCGTGCTCCGCGCCGCCGCCGCCGACAACCTCGGTGCAGCGACGGAGTACGAGAGGGCGGTGTTCCGCGCGCTGTCGGCGCTGATCGGGGAGGAGAGGGACGAGCAGGTGGCGATCGAGCGGCACTTCGAGTTGCTGAAGGAATTCCCCAGGGATCTCATGTCTCTAAAGAGAGCTCAGCTCATCTGCTTCTACATGGGACGCCCTGATACATCGCTCAAATTTGTTGAACAGGTTTTGCCAGAGAATCAAGACCAGAACTACATTTACGGCATGCT]
[-] EMBL AW155308 [TGTTTGGAACGTTTTTCAAAGTTCCCCTCCCCAAGGGGAATCGCGGGGCAAGAACCAAACCCTGGTGTTCACGAGACCCTTTAAAAGGTCACCTCCCCCGCAGAGTGGGGTACCCGGAGGGTTTTCACCCCCTCAAATTGAGCCCACCCTGAGGCCAAGNAGAAGAAGCTCGCCAACGGGAGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTTTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTT CAGGCTGGTGAAACCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTTCTT CTTTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTC AAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC ]
[-] EMBL CF326389 [ ggAGCTCGCCAACGGGAGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGGCCCTTCGACAACCTGCTGCAGCACCTGTNTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTT CAGGCTGGTGAAACCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTTCTT CTTTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTC A AAAAAAAAAAAAAAAAAAAACTC ]
[-] EMBL CF333724 [ AGCACCTGTTTGACCCGTGGCACAACACCATCATCCAGACGCTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAGGGAGCTTGATGAGTT CAGGCTGGTGAAACCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTTCTT C TTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA AAAAAAAAAAAAGAAAAAAAaaaa ]
[-] EMBL CF299224 [ GCACAACACCATCATCCAGACGCTGTCAGGTTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTT CAGGCTGGTGAAACCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTTCTT CTTTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTCCAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA AAAAAAAAAAAAAAAA ]
[+] EMBL CB647483 [ AGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATGAGTT CAGGCTGGTGAAACCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTTCTT CTTTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAGTGCTTCAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCTTCGGCCGGGGCCGTGGCCACGCCGTGCTCCGCGCCGCCGCCGCCGACAACCTCGGTGCAGCGACGGAGTACGAGAGGGCGGTGTTCCGCGCGCTGTCGGCGCTGATCGGGGAGGAGAGGGACGAGCAGGTGGCGATCGAGCGGCACTTCGAGTTGCTGAAGGAATTCCCCAGGGATCTCATGTCTCTAAAGAGAGCTCAGCTCATCTGCTTCTACATGGGACGCCCTGATACATCGCTCAAATTTGTTGAACAGGTTTTGCCAGAGAATCAAGACCAGAACTACATTTACGGCATGCT]
[+] EMBL AU096219 [ TGATGAGTT CA GCTGGTGAAACCGATGATTGGNGCGATCGGAAGATGTTCTCTTCTTGTTTCCTNCCTTTTTTTTTTTNGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA AAAAAAAAAAAAAAAAAAAAaaaaa ]
[+] EMBL AU096265 [ GTTACAGGCTGGTGAANCCGATGATTGG GCGAT GGAAGATGTTCTCTTCTTGTTNCTT CTTTTTTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA AAAAAAAAAAAAAAAAAAAAaaaaaa ]
[-] EMBL CF294441 [ TTTTTTT GTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAAAAAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCATGCATGGATCTGAATGCATGGGTAAGGGGGTAAGTTGAGTGGTGAATTTCTGATGTCCAGTACTACAGGGGGATAAACTATCTCATGGTAGCACCAGTGTTCTAGCTATCTCATGGTCTCGATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAA AAAAAAAAAAAAAAAAAA ]
consensusID : consensus_11623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[TCTTCTTGTTTCTTCTTTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTNTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCNGTGTTNTAGCTATCTCATGGTNTCGATCTTAATTATGGTGGATAAACTACGNTTNATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162965 [TCTTCTTGTTTCTTCTTTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAGAGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTNTGGTAATTGTTTCCTGCATGCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGTACTACAGGGGGATAAACTATCTCATGGTAGCAGCNGTGTTNTAGCTATCTCATGGTNTCGATCTTAATTATGGTGGATAAACTACGNTTNATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11623#0 TGTTTGGAACGTTTTTCAAAGTTCCCCTCCCCAAGGGGAATCGCGGGGCAAGAACCAAAC 60
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 CCTGGTGTTCACGAGACCCTTTAAAAGGTCACCTCCCCCGCAGAGTGGGGTACCCGGAGG 120
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 GTTTTCACCCCCTCAAATTGAGCCCACCCTGAGGCCAAGNAGAAGAAGCTCGCCAACGGG 180
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 AGGCTGGCGATGCTGGCGTTCTTGGGGTTCCTGGTGCAGCACAACGTGACGCAGAAGGGG 240
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 CCCTTCGACAACCTGCTGCAGCACCTGTTTGACCCGTGGCACAACACCATCATCCAGACG 300
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 CTGTCAGGCTGAGCGTGTGATCGATTTCATCAGGGCCAGGGCATCTCAAGGAGCTTGATG 360
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 AGTTCAGGCTGGTGAAACCGATGATTGGGCGATGGAAGATGTTCTCTTCTTGTTTCTTCT 420
consensus_11623#1 --------------------------------------------TCTTCTTGTTTCTTCT 16
****************
consensus_11623#0 TTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAG 480
consensus_11623#1 TTTTTTTTTTGTGGAGTATGCATGTATAAGATGTTAATGAATTGGGGGGAGGAGAGAGAG 76
************************************************************
consensus_11623#0 AGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTGTGGTAATTGTTTCCTGCAT 540
consensus_11623#1 AGAGATGGATGTGATGAGATTCAGACTTACTGTGTGTGTTNTGGTAATTGTTTCCTGCAT 136
**************************************** *******************
consensus_11623#0 GCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGT 600
consensus_11623#1 GCATGGATCTGGATGCATGGGTGAGGGGGTGAGTTGAGTGGTGAATTTCTGATGTACAGT 196
************************************************************
consensus_11623#0 ACTACAGGGGGATAAACTATCTCATGGTAGCAGCAGTGTTCTAGCTATCTCATGGTCTCG 660
consensus_11623#1 ACTACAGGGGGATAAACTATCTCATGGTAGCAGCNGTGTTNTAGCTATCTCATGGTNTCG 256
********************************** ***** *************** ***
consensus_11623#0 ATCTTAATTATGGTGGATAAACTACGCTTAATTGCTTGTCAAAAAAAAAAAAAAAAAAAA 720
consensus_11623#1 ATCTTAATTATGGTGGATAAACTACGNTTNATTGCTAAAAAAAAAAAAAAAAAAAAAAAA 316
************************** ** ****** ********************
consensus_11623#0 AACTCAAGACTAGTTCTCTCCTTCGGCCGGGGCCGTGGCCACGCCGTGCTCCGCGCCGCC 780
consensus_11623#1 AAAAAAAAAAAAAA---------------------------------------------- 330
** ** * *
consensus_11623#0 GCCGCCGACAACCTCGGTGCAGCGACGGAGTACGAGAGGGCGGTGTTCCGCGCGCTGTCG 840
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 GCGCTGATCGGGGAGGAGAGGGACGAGCAGGTGGCGATCGAGCGGCACTTCGAGTTGCTG 900
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 AAGGAATTCCCCAGGGATCTCATGTCTCTAAAGAGAGCTCAGCTCATCTGCTTCTACATG 960
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 GGACGCCCTGATACATCGCTCAAATTTGTTGAACAGGTTTTGCCAGAGAATCAAGACCAG 1020
consensus_11623#1 ------------------------------------------------------------
consensus_11623#0 AACTACATTTACGGCATGCT 1040
consensus_11623#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||