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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 941 fasta sequence
[CTGAAGGAGTAGAAAAAACACCTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCTCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTAGCTGCTTCTCTTCTTTGGATCTGAAGCTATACCTAATACAAATCTCGATGGATCCACAGATCGGCGATGGTTNGGGAAGTCCTCTATCTAAGCTAGGAAGCCATGGCCACCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCGCTACCGCAAAGGAGCGCTCGTCGGGATTAAGTCCGGTTTCGCATTCATCGTCTACCCCATGCCCTCCGTTGGGTATTTCGACGATCCTCTGGTGGCCAGGAGGGACCAGGCCTCCGCTCTGGGTGTTGAAGGTAAAGGGAAGATGGGAAAGGCATACATGAGCCAGAAGAAAGGCGTCAAAGTTGGTGGAAGGGCCCGTGGCCGTGGGGCCAAGTAATTTTGAACCGCTTGTAGTAGGGACGTTTTTTGTTTTATGGGGTTGAGTTTTGAACATACCTAAGTTGTAACTATAAGGTAGCGATTTAGTTGAACCACGCCACTGGGTTACCCACGAAGACAATTCAGCAGCAGTAACAATCATTTGAACCATACGCTATTTCGCTGCTGTATGTGATACTGCTTTTTTTGCAACTCTGGAAATATGTTGATGTCCTGCTCAAAAAAAAAAAAAAAAAAAAAAAAATAAA]
[+] EMBL CF311669 [CTGAAGGAGTAGAAAAAACACCTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCTCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTAGCTGCTTCTCTTCTTTGGATCTGAAGCTATACCTAATACAAATCTCGATGGATCCACAGATCGGCGATGGTTNGGGAAGTCCTCTATCTAAGCTAGGAAGCCATGGCCACCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCG ]
[+] EMBL CF311673 [CTGAAGGAGTAGAAAAAACACCTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCTCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTAGCTGCTTCTCTTCTTTGGATCTGAAGCTATACCTAATACAAATCTCGATGGATCCACAGATCGGCGATGGTTNGGGAAGTCCTCTATCTAAGCTAGGAAGCCATGGCCACCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCGCTAC ]
[+] EMBL CF278364 [ CTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCTCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTAGCTGCTTCTCTTCTTTGGATCTGAAGCTATACCTAATACAAATCTCGATGGATCCACAGATCGGCGATGGAT TGGAAGTCCTCTATCTAAGCTAGGAAGCCATGGCCACCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCGCTACCGCAAAGGAGCGCTCGTCGGGACTAAGTCCGGTTTCGCATTCATCGTCTACCCCATGCCCTCCGTTGGGTATTTCGACGATCCTCTGGTGGCCAGGAGGGACCAGGCCTCCGCTC ]
[+] EMBL CF337132 [ CTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCTCTCCTCTTCCCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTAGCTGCTTCTCTTCT ]
[+] EMBL OS1064A [ TCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCTTTCCNCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCATCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCAAAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGATCGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCTCGAGCTCAGCGCGCTACGTGCTTCTCTTCTTTGGATCTGAAGCTATACCTAATACAAATCTCGATGGATCCACAGATCGGCGATGGAT TGGAAGTCCTCTATCTAAGCTAGGAAGCCATGGGCAACAAGGAGGAGGACACAGAGGAGGTAATGTTCGAGAACAAGTT AAGGGGTACCG AAAGGAGCG TTGTTGGGATAAAGTCCGGT ]
[-] EMBL CF317676 [ GGCCCCCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCGTTACCGCAAAGGAGCGTTCGTCGGGATTAAGTCCGGTTTGGCATTCATGGTTTACCCCATGCCCTCCGTTGGGTATTTCGACGATCCTTTGGTGGCCAGGAGGGACCAGGCCTCCGCTTTGGGTGTTGAAGGTAAAGGGAAGATGGGAAAGGCATACATGAGCCAGAAGAAAGGCGTCAAAGTTGGTGGAAGGGCCCGTGGCCGTGGGGCCAAGTAATTTTGAACCGCTTGTAGTAGGGACGTTTTTTGTTTTATGGGGTTGAGTTTTGAACATACCTAAGTTGTAACTATAAGGTAGCGATTTAGTTGAACCACGCCACTGGGTTACCCACGAAGACAATTCAGCAGCAGTAACAATCATTTGAACCATACGCTATTTCGCTGCTGTATGTGATACTGCTTTTTTTGCAACTCTGGAAATATGTTGATGTCCTGCTCAAAAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF278365 [ AAGATGGGAAAGGCATACATGAGCCAGAAGAAAGGCGTCAAAGCTGGTGGAAGGGCCCGTGGCCGTGGGGCCAAGTAATTTTGAACCGCTTGTAGTAGGGACGTTTTTTGTTCTATGTGGTTGAGTTTTGAACATCCCTAAGTTGTAACTATAAGGTAGCGACTTAGTTGAACCACGCCACTGGGTTACCCACGAAGACAATTCAGCAGCAGTAACAATCATTTGACCCATACGCTATTTCGCTGCGGTATGTGATACTGCTTTTTTTGCAACTCTGGAAATATGTTGATGTCCTGCTCCAAAAAAAAAAAAAAAAAAAAAATATAAA]
consensusID : consensus_11630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGGTTTTTGCAATACTAAAACTTGTTTTTGGGTAACCCGGAGGGGCAGCGAAACAAATTTTTTTCGGGTCCCTGGCTATACTCGGGGGGGGCAATTGTAAAACACAACCGCAAACCAAACCTTTGAAACAACCAAAACACACAGATTCCAGGGGCCATTCCACCACCCAAGGGCAAGTTGCTGTGCCCTTTGAACCACATTAAAAAACTTGCAATCCCAAACGGGGCAGGACATTAACATATTTCCAGAGTTGCAAAAAAAGCCGTTTCACATACCGCAGCGAAATAGCGTATGGGTCAAAAGAATGGTACTGGTGCTGAATTGGCTTCGGG]
[+] EMBL CF311670 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGGTTTTTGCAATACTAAAACTTGTTTTTGGGTAACCCGGAGGGGCAGCGAAACAAATTTTTTTCGGGTCCCTGGCTATACTCGGGGGGGGCAATTGTAAAACACAACCGCAAACCAAACCTTTGAAACAACCAAAACACACAGATTCCAGGGGCCATTCCACCACCCAAGGGCAAGTTGCTGTGCCCTTTGAACCACATTAAAAAACTTGCAATCCCAAACGGGGCAGGACATTAACATATTTCCAGAGTTGCAAAAAAAGCCGTTTCACATACCGCAGCGAAATAGCGTATGGGTCAAAAGAATGGTACTGGTGCTGAATTGGCTTCGGG]
[+] EMBL CF311674 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGGTTTCTGCAGTACTAAAACTTGTTTTTGGGGAACCCGGAGGAGCCGCGAAACAAATTTTTTTCGGGTCCCTGGCTATACTCGGGGAGGGCAATTGTAAAACACAACCGCAAACCAAACCTTTGAAACAACCAAAACACACAAATTCCAGGGGCCATTCCACCACCCAAGGGCAAGTAGCTGTGCCCTTTGAACCCCATTAAAAAACTTGCAATCCCAAACGGGGCAGGACATTAACATATTTCCAGAGTTGCAAAAAAAGCCGTTTCACATACCGCAGCGAAATAGCGTATGGGTCAAAAGATTGGTACTGGTGCTGAAATGGCTTCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11630#0 CTGAAGGAGTAGAAAAAACACCTCATCTTCTTCTTCCTGCAGCTGCAGGGGCCTCTTTCT 60
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 TTCCTCTCCTCTTCTCACCTGCACCCACCACCCACCATGCCTGCTGCCTGCCATGGCGCA 120
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 TCCGGCATAAGCAAGCTGGCCATGGCAGCCGGCAGCCTCACCTGAGACCTGTAGCTAGCA 180
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 AAGCAAGCTGGCCATGGCCCATGGTGGGTGCTCTCCCTGCTGCCGTCCGGCCGGCCGGAT 240
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 CGAGACTGCACAGATCGAGCTTGACGAAGCTGAGCCCTGAGCTAAGCAAGCTACCTACCT 300
consensus_11630#1 ---------------------------------------------------------TTT 3
*
consensus_11630#0 CGAGCTCAGCGCGCTAGCTGCTTCTCTTCTTTGGATCTGA-AGCTATACCTAATACAAAT 359
consensus_11630#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGGTTTTTGCAATACTAAA 63
* * * ** * ** *** * *** * * * ***** **
consensus_11630#0 CTCGATGGATCCACAGATCGGCGATGGTTNGGGAAGTCCTCTATCTAAGCTAGGAAGCCA 419
consensus_11630#1 ACTTGTTTTTGGGTAACCCGGAGGGGCAGCGAAACAAATTTTTTTCGGGT-------CCC 116
* * * *** * * * * * * * * **
consensus_11630#0 TGGCCACCAAGGAGGAGGACACAGAGGAGGTCATGTTCGAGAACAAGTTCACGCGCTACC 479
consensus_11630#1 TGGCTATACTCGGGGGGGGCA-ATTGTAAAACACAACCGCAAACCAAACC-TTTGAAACA 174
**** * * ** ** ** * * * ** ** *** * * * **
consensus_11630#0 GCAAAGGAGCGCTCGTCGGGATTAAGTCCGGTTTCGCATTCATCGTCTACCCCATGCCCT 539
consensus_11630#1 ACCAAAACACACAGATTCCA---GGGGCCATTCCACCACCCAAGGGCAAGTTGCTGTGCC 231
* ** * * * * ** * ** ** * * * ** *
consensus_11630#0 CCGTTGGGTATTTCGACGATCCTCTGGTGGCCAGGAGGGACCAGGCCTCCGCTCTGGGTG 599
consensus_11630#1 CTTTGAACCACATTAAAAAACTTGCAATC-CCAAACGGGGCAGGACATTAAC---ATATT 287
* * * * * * * * * *** *** * * * * * *
consensus_11630#0 TTGAAGGTAAAGGGAAGATGGGAAAGGCATACATGAGCCAGAAGAAAGGCGTCAAAGTTG 659
consensus_11630#1 TCCAGAGTTGCAAAAAAA----GCCGTTTCACATACCGCAGCGAAATAGCGTATGGGTCA 343
* * ** ** * * **** *** ** **** **
consensus_11630#0 GTGGAAGGGCCCGTGGCCGTGGGGCCAAGTAATTTTGAACCGCTTGTAGTAGGGACGTTT 719
consensus_11630#1 AAAGAATGGTAC-TGGTGCTG-----AATTGGCTTCGGG--------------------- 376
*** ** * *** ** ** * ** *
consensus_11630#0 TTTGTTTTATGGGGTTGAGTTTTGAACATACCTAAGTTGTAACTATAAGGTAGCGATTTA 779
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 GTTGAACCACGCCACTGGGTTACCCACGAAGACAATTCAGCAGCAGTAACAATCATTTGA 839
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 ACCATACGCTATTTCGCTGCTGTATGTGATACTGCTTTTTTTGCAACTCTGGAAATATGT 899
consensus_11630#1 ------------------------------------------------------------
consensus_11630#0 TGATGTCCTGCTCAAAAAAAAAAAAAAAAAAAAAAAAATAAA 941
consensus_11630#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||