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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1320 fasta sequence
[ACAGATTTTGAGCGTAGTAGCCTTCTGTCATCTTCAGGGGGTAGTGCATCGTGATTTGAAGCCAGAGAATTTCCTTTTCACAACCAGGGATGAAAATGCTCCCATGAAGTTGATTGATTTTGGTCTCTCTGATTTCATTAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATATTATGTTGCCCCAGAGGTTTTACACAGATCATATAGTATGGAAGCAGACATTTGGAGTATAGGTGTCATAACGTACATTCTGCTCTGTGGCAGTCGGCCATTCTGGGCACGAACAGAATCAGGAATATTCCGATCTGTGTTGAGAGCTGATCCCAACTTTGATGATTCACCGTGGCCTACAGTATCAGCTGAAGCTAAGGATTTTGTGAAGAGATTTCTGAACAAAGATTACCGCAAAAGAATGACCGCTGTTCAAGCACTGACTCATCCTTGGTTGCGAGATGAACAAAGGCAGATCCCGCTGGACATACTCATCTTCAGATTAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGGCACTAACGCGATATTTAACTGATGCTATGAAGG-AATCGAGGGTTCTTGAATTTTTGCATGCGTTGGAACCACTTGCATACAGAAGAATGGACTTTGAAGAGTTCTGTGCCGCAGCAATCAGTCCTTACCAGCTTGAGGCACTGGAAAGGTGGGAGGAGATTGCTGGAACAGCTTTTCAGCAATTTGAACAAGAGGGCAACCGAGTCATATCAGTTGAGGAATTAGCACAGGAATTAAATCTTGCTCCAACTCATTACTCCATCGTTCAAGACTGGATCAGAAAATGCCGATGGGCAAGCTGAAACTTTCTGCGGGTTTACCAAATTTTTGACATGGTGTGCACAATGAAGGGGCTCAAATACCAAGACGGCATTAAGCGATTGTGCAAAAGAAAATGTGATTGCTTTTCTGCTTGCTGAATTTTAAAGCCGCTGCACTGATGTGACCCTCGATTNGATGGTGTTGTGCCCCTGCCTGCTGCCTGATGCCCTGCTGGGTCAATGATGGATGCATTGATTGCTTGTTGCGTGGATGCTGTGCGGCTGTTGTGCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAACNATAGTGTCATGTTGTTCTTTTTTGCCCAAAAAAAAA]
[+] EMBL CF304789 [ACAGATTTTGAGCGTAGTAGCCTTCTGTCATCTTCAGGGGGTAGTGCATCGTGATTTGAAGCCAGAGAATTTCCTTTTCACAACCAGGGATGAAAATGCTCCCATGAAGTTGATTGATTTTGGTCTCTCTGATTTCATTAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATATTATGTTGCCCCAGAGGTTTTACACAGATCATATAGTATGGAAGCAGACATTTGGAGTATAGGTGTCATAACGTACATTCTGCTCTGTGGCAGTCGGCCATTCTGGGCACGAACAGAATCAGGAATATTCCGATCTGTGTTGAGAGCTGATCCCAACTTTGATGATTCACCGTGGCCTACAGTATCAGCTGAAGCTAAGGATTTTGTGAAGAGATTTCTGAACAAAGATTACCGCAAAAGAATGACCGCTGTTCAAGCACTGACTCATCCTTGGTTGCGAGATGAACAAAGGCAGATCCCGCTGGACATACTCATCTTCAGATTAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTT ]
[+] EMBL AU032386 [ AGTATAGGTGTCATAACGTACATTCTGCTCTGTGGCAGTCGGCCATTCTGGGCACGAACAGAATCAGGAATATTCCGATCTGTGTTGAGAGCTGATCCCAACTTTGATGATTCACCGTGGCCTACAGTATCAGCTGAAGCTAAGGATTTTGTGAAGAGATTTCTGAACAAAGATTACCGCAAAAGAATGACCGCTGTTCAAGCACTGACTCATCCTTGGTTGCGAGATGAACAAAGGCAGATCCCGCTGGACATACTCATCTTCAGATTAATTAAGCAATACCTCCGCGCTACACCTCTT AACGGgt ]
[+] EMBL CF196722 [ ATTAATTAAGCAATACCTCCGCGCTACACCTCTTAAACGGTTGGCATTAAAGGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACTGCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGGCACTAACGCGATATTTAACTGATGCTATGAAGG AATCGAGGGTTCTTGAATTTTTGCATGCGTTGGAACCACTTGCATACAGAAGAATGGACTTTGAAGAGTTCTGTGCCGCAGCAATCAGTCCTTACCAGCTTGAGGCACTGGAAAGGTGGGAGGAGATTGCTGGAACAGCTTTTCAGCAATTTGAACAAGAGGGCAACCGAGTCATATCAGTTGAGGAATTAGCACAGGAATTAAATCTTGCTCCAACTCATTACTCCATCGT ]
[+] EMBL BQ906425 [ TATGAAGGAAATCGA GGTTCTTGAATTTTTGCATGCCTTGGAACCACTTGCATACAGAAGAATGGACTTTGAAGAGTTCTGT CCGCAGCAATCAGTCCTTACCAGCTTGAGGCACTGGAAAGGTGGGAGGAGATTGCTGGAACAGCTTTTCAGCAATTTGAACAAGAGGGCAACCGAGTCATATCAGTTGAGGAATTAGCACAGGAATTAAATTTTGCTCCAACTCATTACTCCATCGTTCAAGACTGGATCAGAAAATGCCGATGGGCAAGCTGAAACTTTCTGCGGGTTTACCAAATTTTTGACATGGTGTGCACAATGAAGGGGCTCAAATACCAAGACGGCATTAAGCGATTGTGCAAAAGAAAATGTGATTGCTTTTCTGCTTGCTGAATTTTAAAGCCGCTGCACTGATGTGACCCTCGATTNGATGGTGTTGTGCCCCTGCCTGCTGCCTGATGCCCTGCTGGGTCAATGATGGATGCATTGATTGCTTGTTGCGTGGATGCTGTGCGGCTGTTGTGCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAACNATAGTGTCATGTTGTTCTTTTTTGCCCAAAAAAAAA]
consensusID : consensus_11634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[GTTCTCCGCGGTTTACCCACAAGTGTGTTTACACACTGGTGTGCACCNNATAAGGGGCTCAAAATACCACAGGACGGCTATTAAGCGATTTCGCACAAAGGAAAATGTGATTGCTGTTTGCTGCTTGCTAATGTGGTGAAAGCCGCTGCACCTAATGTGGACCCCTGGATTGGATGTTTTCCCCTCCCGGCTCCCTGATCCCTCCTGGGTNCAAATATGGATCATTATTCCTTGTTCCGTGGATGGCTGTCGGCTGGTTGGTCATGCATAGTTTTTTGGTAGAGAATACATGGTAAAGATCCTTTTGTGAATGAATCCGAATGGATAATGTTTGTTCAAGAAATATAGNGTCATGTTGTTCTTTTTTGCCCC]
[+] EMBL BQ908751 [GTTCTCCGCGGTTTACCCACAAGTGTGTTTACACACTGGTGTGCACCNNATAAGGGGCTCAAAATACCACAGGACGGCTATTAAGCGATTTCGCACAAAGGAAAATGTGATTGCTGTTTGCTGCTTGCTAATGTGGTGAAAGCCGCTGCACCTAATGTGGACCCCTGGATTGGATGTTTTCCCCTCCCGGCTCCCTGATCCCTCCTGGGTNCAAATATGGATCATTATTCCTTGTTCCGTGGATGGCTGTCGGCTGGTTGGTCATGCATAGTTTTTTGGTAGAGAATACATGGTAAAGATCCTTTTGTGAATGAATCCGAATGGATAATGTTTGTTCAAGAAATATAGNGTCATGTTGTTCTTTTTTGCCCC]
consensusID : consensus_11634#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 333 fasta sequence
[CTTTCTCGGGTTTACCNAATTT-TT-ACATGGT-GTCA-CAATAAGGGGCTCAAATACAAGACGGCATTAAGCGATTTGCAAAAGAAAATGTATTCTTTTCTCTTCTAATT-TTAAAGCCGCTCACTATGTGACCCTGATTGATGTTTTCCCCTCCTGCTCCTATCCCTCTGGTCAATATGATCATTATTCTTGTTCGTGATGCTGTCGGCTGTTGTCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAATATAGTGTCATGTTGTTCTTTTTTGCCCCAGTAAAAAAAAAAAAAAAA]
[+] EMBL BI813095 [CTTTCTCGGGTTTACC AATTTGTTGACATGGTGGTCA CAATAAGGGGCTCAAATACAAGACGGCATTAAGCGATTTGCAAAAGAAAATGTATTCTGTTCTCTTCTAATTCCCCCAGCCGCTCACTATGTGACCCTGATTGATGTTTTCCCCTCCTGCTCCTATCCCTCTGGTCAATATGATCATTATTCTTGTTCGTGATGCTGTCGGCTGTTGTCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGCATCGAATGATATGTTTGTTCAAAAAAa ]
[+] EMBL BM419528 [ TTTCTCGGGTTTACCNAATTT TT ACATGGT GTCANCCATAAGGGGCTCAAATACAAGACGGCATTAAGCGATTTGCAAAAGAAAATGTATTCTTTTCTCTTCTAATT TTAAAGCCGCTCACTATGTGACCCTGATTGATGTTTTCCCCTCCTGCTCCTATCCCTCTGGTCAATATGATCATTATTCTTGTTCGTGATGCTGTCGGCTGTTGTCATCATACTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAATATAGTGTCATGTTGTTCTTTTTTGCCCCAGTAAAAAAAAAA ]
[-] EMBL CA759706 [ TTCTCGGGTTTACCAAATTT TT ACATGGT GTCA CAGTAAGGGGCTCAAATACAAGACGGCATTAAGCGATTTGCAAAAGAAAATGTATTCTTTTCTCTTCTAATT TTAAAGCCGCTCACTATGTGACCCTGATTGATGTTTTCCCCTCCTGCTCCTATCCCTCTGGTCAATATGATCATTATTCTTGCTCGTGATGCTGTCGGCTGTTGTCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAATATAGTGTCATGTTGTTCTTTTTTGCCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA757440 [ agtctcgaGTTTTTTTTTCTCTTCTAATT TTAAAGCCGCTCACTATGTGACCCTGATTGATGTTTTCCCCTCCTGCTCCTATCCCTCTGGTCAATATGATCATTATTCTTGTTCGTGATGCTGTCGGCTGTTGTCATCATAGTTTTTTGTAGAGAATACATGTAAAGATCTTTTGTAATGAATCGAATGATATGTTTGTTCAAGAAATATAGTGTCATGTTGTTCTTTTTTG CCCAGTAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11634#0 ACAGATTTTGAGCGTAGTAGCCTTCTGTCATCTTCAGGGGGTAGTGCATCGTGATTTGAA 60
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 GCCAGAGAATTTCCTTTTCACAACCAGGGATGAAAATGCTCCCATGAAGTTGATTGATTT 120
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 TGGTCTCTCTGATTTCATTAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATA 180
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 TTATGTTGCCCCAGAGGTTTTACACAGATCATATAGTATGGAAGCAGACATTTGGAGTAT 240
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 AGGTGTCATAACGTACATTCTGCTCTGTGGCAGTCGGCCATTCTGGGCACGAACAGAATC 300
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 AGGAATATTCCGATCTGTGTTGAGAGCTGATCCCAACTTTGATGATTCACCGTGGCCTAC 360
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 AGTATCAGCTGAAGCTAAGGATTTTGTGAAGAGATTTCTGAACAAAGATTACCGCAAAAG 420
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 AATGACCGCTGTTCAAGCACTGACTCATCCTTGGTTGCGAGATGAACAAAGGCAGATCCC 480
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 GCTGGACATACTCATCTTCAGATTAATTAAGCAATACCTCCGCGCTACACCTCTTAAACG 540
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 GTTGGCATTAAAGGCACTATCCAAGGCTTTAAGGGAAGATGAACTTTTGTATCTCAAACT 600
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 GCAGTTTAAACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGGC 660
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 ACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAATTTTTGCATGC 720
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 GTTGGAACCACTTGCATACAGAAGAATGGACTTTGAAGAGTTCTGTGCCGCAGCAATCAG 780
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 TCCTTACCAGCTTGAGGCACTGGAAAGGTGGGAGGAGATTGCTGGAACAGCTTTTCAGCA 840
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 ATTTGAACAAGAGGGCAACCGAGTCATATCAGTTGAGGAATTAGCACAGGAATTAAATCT 900
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 TGCTCCAACTCATTACTCCATCGTTCAAGACTGGATCAGAAAATGCCGATGGGCAAGCTG 960
consensus_11634#2 ------------------------------------------------------------
consensus_11634#1 ------------------------------------------------------------
consensus_11634#0 AAACTTTCTGCGGGTTTACCAAATTT---TTGACA---TGGTGTGCACAATG-AAGGGGC 1013
consensus_11634#2 ---CTTTCT-CGGGTTTACCNAATTT---TT-ACA---TGGTGT-CACAAT--AAGGGGC 46
consensus_11634#1 --GTTCTCCGCGGTTTACCCACAAGTGTGTTTACACACTGGTGTGCACCNNATAAGGGGC 58
* ** *** ** ** * * ** *** ****** *** *******
consensus_11634#0 TCAAA-TACC--AAGACGGC-ATTAAGCGATTGTGCA--AAAGAAAATGTGATTGCTTTT 1067
consensus_11634#2 TCAAA-TAC---AAGACGGC-ATTAAGCGATT-TGCA--AAAGAAAATGTATTCTTTTCT 98
consensus_11634#1 TCAAAATACCACAGGACGGCTATTAAGCGATTTCGCACAAAGGAAAATGTGATTGCTGTT 118
***** *** * ****** *********** *** ** ******** * * *
consensus_11634#0 --CTGCTTGCTGAATT--TTAAAGCCGCTGCAC-TGATGTGACCCTCGATTNGATGGTGT 1122
consensus_11634#2 --CTTCT-----AATT--TTAAAGCCGCT-CAC-T-ATGTGACCCT-----GATTGATGT 141
consensus_11634#1 TGCTGCTTGCTAATGTGGTGAAAGCCGCTGCACCTAATGTGGACCCC--TGGATTGGATG 176
** ** * * * ********* *** * ***** ** **
consensus_11634#0 TGTGCCCCTGCCTGCTGCCTGATGCCCTGCTGGGTCAATGATGGATGCATTGATTGCTTG 1182
consensus_11634#2 TTT--CCCCTCCTGCT-CCTATCCCTCTGGTCAAT--ATGAT-----CATTATT--CTTG 189
consensus_11634#1 TTTTCCCCTCCCGGCTCCCTGATCCCTCCTGGGTNCAAATATGGAT-CATTATTC-CTTG 234
* * *** ** *** *** * * ** **** * ****
consensus_11634#0 TTGCGTGGATG-CTGTGCGGCTG-TTGTGCAT-CATAGTTTTTTG-TAGAGAATACATG- 1237
consensus_11634#2 TT-CGTG-ATG-CTGT-CGGCTG-TTGT-CAT-CATAGTTTTTTG-TAGAGAATACATG- 240
consensus_11634#1 TTCCGTGGATGGCTGT-CGGCTGGTTGGTCATGCATAGTTTTTTGGTAGAGAATACATGG 293
** **** *** **** ****** *** *** ************ *************
consensus_11634#0 TAAAGATC-TTTTGT-AATGAATC-GAATGAT--ATGTTTGTTCAAGAAACNATAGTGTC 1292
consensus_11634#2 TAAAGATC-TTTTGT-AATGAATC-GAATGAT--ATGTTTGTTCAAGAAA-TATAGTGTC 294
consensus_11634#1 TAAAGATCCTTTTGTGAATGAATCCGAATGGATAATGTTTGTTCAAGAAA-TATAGNGTC 352
******** ****** ******** ***** **************** **** ***
consensus_11634#0 ATGTTGTTCTTTTTTGCCCAAAAAAAAA----------- 1320
consensus_11634#2 ATGTTGTTCTTTTTTGCCCCAGTAAAAAAAAAAAAAAAA 333
consensus_11634#1 ATGTTGTTCTTTTTTGCCCC------------------- 372
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||