These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 948 fasta sequence [TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATATAATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTTTTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT-AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG-TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT] [+] EMBL CB673492 [TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATATAATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTTTTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAAATAAAa ] [+] EMBL CB663255 [ TATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATA ] [+] EMBL CB644804 [ ttTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT] [+] EMBL CB677280 [ TTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGA ] [+] EMBL CB644802 [ ATTACGTGATTCCTTAA AGGTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATCTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGC ] [+] EMBL CB673491 [ CTGTGGCTTGGGGGACTGCTTTACATTACCTATCAGGTGTTGAGAGTTCTCCACTTGAG ATAGTCCGTTATATATGGTGCTTCATGACATAAGCGCTCGTTGGATGGTACCTAATTATTAGGCGCACTATGCATGAATACCTCGCAAGCAGTATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACGTTAAACATTTTACTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAGATTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGGTTAAAAATTAAA ] [+] EMBL CB644801 [ cngGACGTACGTGCTCGTGGGATGGCAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGGGGATAGTATTTATATACTTATGGATAAGGGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATGATATACTACACATTAAACATTTTATTAAATAAGCAATAAGTTCTAGAGTACTTATCAAATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACGACCATAACCTACATCGTATATATTTAAAAGCAACTTGGGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTCGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGcg ] consensusID : consensus_11639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA] [+] EMBL CB663254 [GTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA] consensusID : consensus_11639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [GGACGGCGTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGCCTCTGGGCCCGTCTCCGGGACGC] [+] EMBL CB644803 [GGACGGCGTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGCCTCTGGGCCCGTCTCCGGGACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11639#1 ------------------------------------------------------------ consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATAT 60 consensus_11639#1 ------------------------------------------------------------ consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 AATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTT 120 consensus_11639#1 ------------------------------------------------------------ consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 TTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAA 180 consensus_11639#1 ----------------------------------------------------------GT 2 consensus_11639#2 ---------------------------------------------------GGACGGCGT 9 consensus_11639#0 GAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGAT 240 * consensus_11639#1 CGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTT 62 consensus_11639#2 CGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTT 69 consensus_11639#0 TATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTC 300 ** * * * * * ** ** * * * * * * ** *** consensus_11639#1 CTCCCCCCACCGTCTCTCGCCCTCCAC-CCGCGAAAAGTGAGAGAGAGAACGGCGACGAC 121 consensus_11639#2 CTCCCCCCACCGTCTCTCGCCCTCCAC-CCGCGAAAAGTGAGAGAGAGAACGGCGACGAC 128 consensus_11639#0 CACTTAGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGC 360 * * ** *** * * * * * ** * * * * * consensus_11639#1 GGA--GATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGAC 179 consensus_11639#2 GGA--GATGGCGGCGCCGCCTCTGG---GCCCGTCTCCGGGACGC--------------- 168 consensus_11639#0 TAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGG 420 * * * ** * * * * consensus_11639#1 ATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAG 239 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 ATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTT 480 consensus_11639#1 CAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATAT 299 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 TATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTC 540 consensus_11639#1 GATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACAT 359 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 TAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGG 600 consensus_11639#1 TTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCC 419 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 AATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTAT 660 consensus_11639#1 AGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATC 479 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 GCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGT 720 consensus_11639#1 TAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGT 539 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 ATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTAT 780 consensus_11639#1 ATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATT 599 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 TATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAAT 840 consensus_11639#1 AAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATAT 659 consensus_11639#2 ------------------------------------------------------------ consensus_11639#0 AAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATA 900 consensus_11639#1 GTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA---- 703 consensus_11639#2 ------------------------------------------------ consensus_11639#0 AAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT 948 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||