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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 948 fasta sequence
[TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATATAATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTTTTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT-AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG-TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT]
[+] EMBL CB673492 [TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATATAATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTTTTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAAATAAAa ]
[+] EMBL CB663255 [ TATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATA ]
[+] EMBL CB644804 [ ttTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATAAAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT]
[+] EMBL CB677280 [ TTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAAGAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGA ]
[+] EMBL CB644802 [ ATTACGTGATTCCTTAA AGGTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGATTATTATCTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTCCACTT AGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACAGCCATCCAGC ]
[+] EMBL CB673491 [ CTGTGGCTTGGGGGACTGCTTTACATTACCTATCAGGTGTTGAGAGTTCTCCACTTGAG ATAGTCCGTTATATATGGTGCTTCATGACATAAGCGCTCGTTGGATGGTACCTAATTATTAGGCGCACTATGCATGAATACCTCGCAAGCAGTATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACGTTAAACATTTTACTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAGATTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGGTTAAAAATTAAA ]
[+] EMBL CB644801 [ cngGACGTACGTGCTCGTGGGATGGCAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGGGGATAGTATTTATATACTTATGGATAAGGGGTGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATGATATACTACACATTAAACATTTTATTAAATAAGCAATAAGTTCTAGAGTACTTATCAAATTGGTTACTCCTTGTTTTCCCAG TTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACGACCATAACCTACATCGTATATATTTAAAAGCAACTTGGGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTCGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGcg ]
consensusID : consensus_11639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[GTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA]
[+] EMBL CB663254 [GTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATATGATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGTATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA]
consensusID : consensus_11639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence
[GGACGGCGTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGCCTCTGGGCCCGTCTCCGGGACGC]
[+] EMBL CB644803 [GGACGGCGTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTTCTCCCCCCACCGTCTCTCGCCCTCCACCCGCGAAAAGTGAGAGAGAGAACGGCGACGACGGAGATGGCGGCGCCGCCTCTGGGCCCGTCTCCGGGACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11639#1 ------------------------------------------------------------
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 TGTATAGGTACGTACGTAGGCGTGAGATTAGTTGGTTTTTAGCTGGAATATATCCAATAT 60
consensus_11639#1 ------------------------------------------------------------
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 AATGGTTGAAAATAATGGATCTACCAGTTGAAGTGTAAATTGATGACCAGATATTTTCTT 120
consensus_11639#1 ------------------------------------------------------------
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 TTTTATATTTTTTCTTATACTTTTTTTCTAGTTTATGAGATCTATTACGTGATATATTAA 180
consensus_11639#1 ----------------------------------------------------------GT 2
consensus_11639#2 ---------------------------------------------------GGACGGCGT 9
consensus_11639#0 GAGTTCTTGTAGAAGTGTAGAAATTCTATTGCTTATACTGACAATATACTTGTAGTCGAT 240
*
consensus_11639#1 CGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTT 62
consensus_11639#2 CGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCATGGCCAGCGCCTTTTCTCTTCTCTT 69
consensus_11639#0 TATTATTTGCTGTGGCTTGGTGGCATGCTTTACTTTACCTATCATTTGTTGATAGTTCTC 300
** * * * * * ** ** * * * * * * ** ***
consensus_11639#1 CTCCCCCCACCGTCTCTCGCCCTCCAC-CCGCGAAAAGTGAGAGAGAGAACGGCGACGAC 121
consensus_11639#2 CTCCCCCCACCGTCTCTCGCCCTCCAC-CCGCGAAAAGTGAGAGAGAGAACGGCGACGAC 128
consensus_11639#0 CACTTAGCATAGTCCGTTATATATGGTGCTTCATGACATAAGTGCTCGTTGGATGGTAGC 360
* * ** *** * * * * * ** * * * * *
consensus_11639#1 GGA--GATGGCGGCGCCGTTCTCCACTTACCATACTCCGTTATATATGGTGCTTCATGAC 179
consensus_11639#2 GGA--GATGGCGGCGCCGCCTCTGG---GCCCGTCTCCGGGACGC--------------- 168
consensus_11639#0 TAATTATTAGGTGCACTATGCATGAATACCTCGTAAGCAATATGACTTGACGATTAGTGG 420
* * * ** * * * *
consensus_11639#1 ATAAGTGCTCGGTGGATGGTAGCTAATTATTAGGTGCACTATGCATGAATACCTCGTAAG 239
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 ATAGTATTTATATACTTATGGATAAGTGGTGGCATATGATTATATATTAGGATATTTTTT 480
consensus_11639#1 CAATATGACTTGACGATTAGTGGATAGTATTTATATACTTATGGATAAGTGGGGGCATAT 299
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 TATTCATAAAGTATATTATATACTACACATTAAACATTTTAGTAAATAAGCAATAAGTTC 540
consensus_11639#1 GATTATATATTAGGATATTTTTTTATTCATAAAGTATATTATATACTACACATTAAACAT 359
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 TAGAGTACTTATCAGATTGGTTACTCCTTGTTTTCCCAGTTATCTACCCATTGATATAGG 600
consensus_11639#1 TTTAGTAAATAAGCAATAAGTTCTAGAGTACTTATCAGATGGGTTACTCCTTGTTTTCCC 419
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 AATTATTACAAAAGACATATCTTTTGATAATAATATCTAAATCCATCTGAACCATTTTAT 660
consensus_11639#1 AGTTATCTACCCATTGATATAGGAATTATTACAAAAGACATATCTTTTGATAATAATATC 479
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 GCACTATAATTAAATTGACAACCATAACCTACATCGTATATATTTAAAAGCAACTTGTGT 720
consensus_11639#1 TAAATCCATCTGAACCATTTTATGCACTATAATTAAATTGACAACCGTAACCTACATCGT 539
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 ATAATTAAAATATATTTTATATAAAAGTTTAAAAATTAAATAAATCTATTTTGGCTTTAT 780
consensus_11639#1 ATATATTTAAAAGCAACTTGTGTATAATTAAAATATATTTTATATAAAAGTTTAAAAATT 599
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 TATATTCAATATTTAATTAATCTTGCACTAATGATATGTGTCGTTTCATGTATCCTGAAT 840
consensus_11639#1 AAATAAATCTATTTTGGCTTTATTATATTCAATATTTAATTAATCTTGCACTAATGATAT 659
consensus_11639#2 ------------------------------------------------------------
consensus_11639#0 AAGCTCAGCCATCCAGTTACAGCCATCCAGCTAGATCAAATGAAGCATAAGTAGAAGATA 900
consensus_11639#1 GTGTCGTTTCATGTATCCTGAATAAGCTCAGCCATCCAGTTACA---- 703
consensus_11639#2 ------------------------------------------------
consensus_11639#0 AAGTAGATCAGTACGGTGTGAAAAGAATATATACAATCTTTGATATTT 948
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||