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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1501 fasta sequence
[CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGTTCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTACTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTTGCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCTTCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAACTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGTTTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGGTTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTGACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGGTATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGACGAGAGAGAGAAACCTCA-ACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC-GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC-GGGGGATTTAAGTGTGCAGACT-GATAATCTTGAT-GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG-TTAGAGGGGATATCA-GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA-GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTANAATTGCATTGTGCAAAAA]
[+] EMBL CB670189 [CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGTTCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTACTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTTGCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCTTCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAACTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGTTTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGGTTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTGACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGAT ]
[+] EMBL AU162544 [ GCAAAGAAACAACAGTGCTGCCAATTCTTCACTCGGTTTGGCGAGTGCGAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCNAAAGTGACTNTATGTACTAAATTTCTTAAAGGATTGTGTNCTAATACTAGTTGCAAACTGACTCACAAGGTCCTTCCAGAAAGAATGCCAGAGTGTTCTTATTTTCTGAGAGGACTCTGTACCAACATAGCCTGCCCCTATAGGCATGTGANAGTGAACGTGAATGCNCCTGTTTGTGAAGACTTCTTAAAAGGATATTGTGCATATGGTG ]
[-] EMBL CB673746 [ AAAGCACAGCTATGTATGTCCTGTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAGAGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGGTATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGACGAGAGAGAGAAACCTCA ACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC GGGGGATTTAAGTGTGCAGACT GATAATCTTGAT GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG TTAGAGGGGATATCA GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTGCATTGCAGAAGAAAGAAATGGCAATTTATTT ]
[+] EMBL AU032319 [ tgCCATCAAGNTGCGCCAAGG AAG CTCTTTAGCCG ACNCGATAGCG GAAACCTCA ACGTGTTTCCACTGATGGGNATTTGGCCTTTATCAGCTTGGATGATGATGCGGGATGAAGATGTTACAGCTTNAGATGCCNCAGATGATATACCGCTGATGGAATTGGCCTCNGGGGGATTTAAGTGTGCAGACTCGATAATCTTGATGGCACTAATCAAGCCACTTCGGNTCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGNTTAGAGGGGATATCANGATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCANGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACCNACAATCATTTACATTGCANAANAAANAAATGGCAATTTATTTANAATTGCATTGTGCAAAAA]
[-] EMBL CB640262 [ GAGAGAAA CTCACACGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGC GGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTC GGGGGATTTAAGTGTGCAGACT GATAATCTTGAT GCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAG TTAGAGGGGATATCA GATTTTCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTAGAATT ]
[+] EMBL CA766582 [ AGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCA GTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTA CCTTCTTCGGAAGTT CATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATT ]
consensusID : consensus_11643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence
[GAAGACGAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCA-CTTCGGATCATGAGAACA-GCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC-AACTTGATACA-ACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC--ATCATTTAC-TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAAAAAA]
[+] EMBL BI812124 [GAAGACGAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCA CTTCGGATCATGAGAACA GCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACA ACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAACAAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAA ]
[+] EMBL BI812017 [ ACGAGAGAGAGAAACCTC AACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGATGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAGTTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAAGCCACCTTCGGATCATGAGAACACGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC AACTTGATACACACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC ATCATTTAC TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAA ]
[+] EMBL BI813391 [ GAT AT CGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCCAGACTGATAATCTTGATGCACTAATCAA CCA CTTCGGATCATGAGAACA GCAAGAGTTTGATAGCTAAGCCAGTTAGAGGGGATAACAGTAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACC AACTTGATACA ACAGGATAGGT CAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAAC ATCATTTAC TTGCAGAAGAAAGAAATGGCAATTTATTTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11643#0 CTTTAGTTCCAGCACTGTGGACTTATTGATCACCTTTTTAGGTGCTTACCATCGATGAGT 60
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TCATATTTCTTGTGGAAACATGTTTCCTTGAATTGCCTTTCTCTGCAAACATATATTTTA 120
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 CTGATTAATCATTTTTTTCATTAGCTTTTCTTTGTTTACGCTCTATGATGTCTTAATTTT 180
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 GCAGATCATCAATTTGAATCTGTCACTGGCAATCAATTAAGAAACAGCCGCCAATCGTCT 240
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TCCGATTTGAGAAAGCCATCGACTTGCAATGAATATGTGCGCGTTAGCAAAGGTAACCAA 300
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 CTGGTTAGAAATCCGAAGAATGTAATCCGCATGCTAGCAAGTGACAAAGTTCGATGGAGT 360
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TTGCACACTGTGAGATCACGCCTAGCAAAGAAACAACAGTACTGCCAATTCTTCACTCGG 420
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TTTGGCGAGTGCAAAAAACCCAGGGGCAAATGCCCTTATATTCATGACCGAGCTAAAGTG 480
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 ACTATATGTACTAAATTTCTTAAAGGATTGTGTTCTAATACTAGTTGCAAACTGACTCAC 540
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 AAGGTCCTTCCAGAAAGAATGCCAGATTGTTCTTATTTTCTGAGAGGACTCTGTACCAAC 600
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 ATAGCCTGCCCCTATAGGCATGTGAAAGTGAACTTGAATGCTCCTGTTTGTGAAGACTTC 660
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TTAAAAGGATATTGTGCATATGGTGACGAGTGTCATAAAAAGCACAGCTATGTATGTCCT 720
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 GTCTTCGAGGCAACTGGAGAGTGCCCACAAGGATCTAGATGCAAACTTCATCACCCTAAG 780
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 AGCAAAGTCAAATCCAAGAGCAGAAGACCAGATTTCTTGCAAAACAGTAGTTGGGGCCGG 840
consensus_11643#1 ------------------------------------------------------------
consensus_11643#0 TATTTTGATGCCAGCATTGACCATCAAGATGAGACAAGGAAAGTTTCTTTAGACGAAGAC 900
consensus_11643#1 ------------------------------------------------------GAAGAC 6
******
consensus_11643#0 GAGAGAGAGAAACCTCAA-CGTGTTTTCACTGATGGGGATTTGGGCTTTATCAGCTTGGA 959
consensus_11643#1 GAGAGAGAGAAACCTCAAACGTGTTTTCTCTGATGGGGATTTGGGCTTTATCAGCTTGGA 66
****************** ********* *******************************
consensus_11643#0 TGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGA 1019
consensus_11643#1 TGATGATGCGGATGAAGATGTTACAGCTTTAGATGCGTCAGATGATATACCGCTGATGGA 126
************************************************************
consensus_11643#0 ATTGGACTCGGGGGATTTAAGTGTGCAGACTGATAATCTTGATGCACTAATCAAGCCACT 1079
consensus_11643#1 ATTGGACTCGGGGGATTTAAGTGC-CAGACTGATAATCTTGATGCACTAATCAAGCCACT 185
*********************** ***********************************
consensus_11643#0 TCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATATCAGATTT 1139
consensus_11643#1 TCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATA-------- 237
****************************************************
consensus_11643#0 TCAACGCGAAGACTTACCATCTCAACGAACTAATCTAGCCGCTTTGGATCATGGTGACAG 1199
consensus_11643#1 --------------------------------------------------------ACAG 241
****
consensus_11643#0 CAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAG 1259
consensus_11643#1 CAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAA-CTTGATACAACAGGATAG 300
***************************************** ******************
consensus_11643#0 GTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCA 1319
consensus_11643#1 GTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCA 360
************************************************************
consensus_11643#0 TTGTTTTTCTACCCTTATTCGGAAGTTCCATTTTTGTTTGTCATGTACATATAGTTATTT 1379
consensus_11643#1 TTGTTTTTCTACC-TTCTTCGGAAGTTC-ATTTTTGTTTGTCATGTACATATAGTTATTT 418
************* ** *********** *******************************
consensus_11643#0 TTCTTATGTTTTAGGTTACCTATATTACATGCCAACATCACACAGAGTTAAGTGTAACGA 1439
consensus_11643#1 TTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGA 478
*********************************** ************************
consensus_11643#0 ACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTANAATTGCATTGTGCAAA 1499
consensus_11643#1 ACA-TCATTTAC-TTGCAGAAGAAAGAAATGGCAATTTATTTAAAAAAAAAA-------- 528
*** ******** ****************************** ** *
consensus_11643#0 AA 1501
consensus_11643#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||