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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 959 fasta sequence
[TCCCGTTCCCTCGATCTCTGCCTCCTCCCCCCACCGCCGGAGAAGGTCGCCGCCGGCGA-GCGAGCGCGCCCGCCGGAGTTGTAGCCGCCTCTCTCCCCCCCGCGGCAGCCTGACGCCTTCACGCAGCGTGATCTCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGTTCAGTTGGTGGACTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAGATTAGCGAGATCAAAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTT-GACTGGAATCGGCTTGTTGCTTGGTT-GGCAATCTATGT-GGCAGCTTTTCACAAAGAAGGCAAACATTAA-GGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTATA-CCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATT-CCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTGGAGTTTATCTGGCTTTTGCTCATTTTGCTAACTGGCAGTAGTTTAGTGTTCATATATAGACGATGTAGAGGCTTCAAATGATTGTTGCTAGAAATTTGGGATCTGGGTTTAGCAAAACATGTGGATCTTTTAGCCTATTTCTAACAAATTGTGAGCCAGTAACTATTGCTTGAAAACAAAAAAAAAAAAA]
[+] EMBL AK068109 [TCCCGTTCCCTCGATCTCTGCCTCCTCCCCCCACCGCCGGAGAAGGTCGCCGCCGGCGA GCGAGCGCGCCCGCCGGAGTTGTAGCCGCCTCTCTCCCCCCCGCGGCAGCCTGACGCCTTCACGCAGCGTGATCTCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGTTCAGTTGGTGGACTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAGATTAGCGAGATCAAAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTT GACTGGAATCGGCTTGTTGCTTGGTT GGCAATCTATGT GGCAGCTTTTCACAAAGAAGGCAAACATTAA GGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTATA CCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATT CCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGT ]
[+] EMBL AK068016 [ CTGCCTCCTCCCCCCACCGCCGGAGAAGGTCGCCGCCGGCGA GCGAGCGCGCCCGCCGGAGTTGTAGCCGCCTCTCTCCCCCCCGCGGCAGCCTGACGCCTTCACGCAGCGTGATCTCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGTTCAGTTGGTGGACTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAGATTAGCGAGATC AAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTT GACTGGAATCGGCTTGTTGCTTGGTT GGCAATCTATGT GGCAGCTTTTCACAAAGAAGGCAAACATTAA GGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTATA CCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATT CCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTGGAGTTTATCTGGCTTTTGC ]
[+] EMBL C73155 [ CTCCCCCCACCGCCGGAGAAGGTCGCCGCCGG GANGCGAGCGCGCCCGCCGGAGTTGTAGCCGCCTCTCTCCCCCCCGCGGCAGCCTGACNCCTTCACGCAGCGTGATCNCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGTTCAGTTGGTGGACTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAGATTAGCGAGATCAAAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTTGGACTGGAATCGGCTTGTTGCTTGGTTGGGCAATCTATGTGGGCAGCTTTTCACAAAGAAGGCAAACATTAAGGGGATCTGTTCC TTCTTCCTTGGTCTGTTTCTTCTCT ]
[+] EMBL AU029837 [ CTTCACGCAGCGTGATCTCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGTTCAGTTGGTGGATTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAGATTAGCGAGATCAAAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTT GACTGGAATCGGCTTGTTGCTTGGTT GGCAATCTATGT GGCAGCTTTTCACAAAGAAGGCAAACATTAA GGGATCTGTTCCTTTCTTCCTTGGTCTG TNCCTCCCCTTGTCCGAT GCCTG TGCTGGCATAAT ATGGA CTA AANGATCTTTTG TCNC TCAATGGTangacc ]
[+] EMBL C74686 [ CGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTT GACTGGAATCGGCTTGTTGCTTGGTT GGCAATCTATGT GGCAGCTTTTCACAAAGAAGGCAAACATTAA GGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTAT ]
[+] EMBL AU057155 [ TTGTTGCTTGGTT GGCAATCTATGT GGCAGCTTTTCACAAAGAAGGCAAACATTAA GGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCTGTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTNCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTATA CCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATT CCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGANAACTCACGGCAGAAATTACCCTTCGTAC ]
[+] EMBL AU057156 [ TGGATCTTTTGTTCTCTTCAGTGGTTATGGACCTCCTATCCAGGCCTTCCTATA CCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATT CCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTGGAGTTTATCTGGCTTTTGCTCATTTTGCTAACTGGCAGTAGTTTAGTGTTCATATATAGACGATGTAGAGGCTTCAAATGATTGTTGCTAGAAATTTGGGATCTGGGTTTAGCAAAACATGTGGATCTTTTAGCCTATTTCTAACAAATTGTGAGCCAGTAACTATTGCTTGAAAACAAAAAAAAAAAAA]
[+] EMBL AU029838 [ ATCTTTTGGTCTCTTCAGTGGTTATGGNCCTCCTATCCAGGCCTTCCTATACCCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATTCCCAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTTCGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGATGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTGGAGTTTATCTGGCTTTTGCTCATTTTGCTAACTGGCAGTAGTTTAGTGTTCATATATAGACGATGTAGAGGCTTCAAATGATTGTTGCTAGAAATTTGGGATCTGGGTTTAGCAAAACATGTGGATCTTTTAGCCTATTTCTAACAAATTGTGAGCCAGTAACTATTGCTTGAAAAAAAAAAAAA ]
consensusID : consensus_11647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[TGGTCTGTTTTTTTTCTTTGTCCAATGCCCTTTTACTGGCATAATAATGGAGCTATATGGATTTTTTTTTTTTTTCAGTGGTTATGGACCTCCTATCCAGGCTTTCCTATACCAAATTCCAGTCATTGGATGGATTTTGCAATACCCATTCCACCTTTTTGGTCAATTCAGGGGTAAACGTGCATGACAACTCTCGGCAGAAATTCCCCTTTGTACGGGAGCATATTTTTTGATGTTAATACGGAAACCTTGTGTGTTCCATTTGCCACAATCCAGTTTAATTTTTTTGTGCATATTCATACTTTCCCCTTTTTAATTTGGAGTTTATTTGGCTTTTGCTCATTTTGCTAACTTGCAGTATTTTAGTGTTCATATATAAACGATGTAGAGGCTTCAAATGATTTTTTTTAGAAATTTGGGATTTGGGTTAAACATGTGGATTTTTTAGCCTTTTTGGGAGAGGCGGCT]
[-] EMBL CB632746 [TGGTCTGTTTTTTTTCTTTGTCCAATGCCCTTTTACTGGCATAATAATGGAGCTATATGGATTTTTTTTTTTTTTCAGTGGTTATGGACCTCCTATCCAGGCTTTCCTATACCAAATTCCAGTCATTGGATGGATTTTGCAATACCCATTCCACCTTTTTGGTCAATTCAGGGGTAAACGTGCATGACAACTCTCGGCAGAAATTCCCCTTTGTACGGGAGCATATTTTTTGATGTTAATACGGAAACCTTGTGTGTTCCATTTGCCACAATCCAGTTTAATTTTTTTGTGCATATTCATACTTTCCCCTTTTTAATTTGGAGTTTATTTGGCTTTTGCTCATTTTGCTAACTTGCAGTATTTTAGTGTTCATATATAAACGATGTAGAGGCTTCAAATGATTTTTTTTAGAAATTTGGGATTTGGGTTAAACATGTGGATTTTTTAGCCTTTTTGGGAGAGGCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11647#0 TCCCGTTCCCTCGATCTCTGCCTCCTCCCCCCACCGCCGGAGAAGGTCGCCGCCGGCGAG 60
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 CGAGCGCGCCCGCCGGAGTTGTAGCCGCCTCTCTCCCCCCCGCGGCAGCCTGACGCCTTC 120
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 ACGCAGCGTGATCTCCTTCCCCCCCTACCGCTGGCGGGGATCCGTGCTCTGTCGGTCGGT 180
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 TCAGTTGGTGGACTGGTGAACTGAAACTTATTGCTTGGTGCTAGTGTGATGGCGTACGAG 240
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 ATTAGCGAGATCAAAAAAATTGGCATAGGCCTGGTGGGCTTTGGCATCCTATTCTCATTC 300
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 TTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATATTTTCTTCTTG 360
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 ACTGGAATCGGCTTGTTGCTTGGTTGGCAATCTATGTGGCAGCTTTTCACAAAGAAGGCA 420
consensus_11647#1 ------------------------------------------------------------
consensus_11647#0 AACATTAAGGGATCTGTTCCTTTCTTCCTTGGTCTGTTTCTTCTCTTTGTCCGATGGCCT 480
consensus_11647#1 -----------------------------TGGTCTGTTTTTTTTCTTTGTCCAATGCCCT 31
********** ** ********* *** ***
consensus_11647#0 GTTGCTGGCATAATAATGGAGCTATATGGATCTTTTGTTCTCTTCAGTGGTTATGGACCT 540
consensus_11647#1 TTTACTGGCATAATAATGGAGCTATATGGATTTTTTTTTTTTTTCAGTGGTTATGGACCT 91
** *************************** **** ** * ******************
consensus_11647#0 CCTATCCAGGCCTTCCTATACCAGATTCCAGTCATTGGATGGATTCTGCAATACCCATTC 600
consensus_11647#1 CCTATCCAGGCTTTCCTATACCAAATTCCAGTCATTGGATGGATTTTGCAATACCCATTC 151
*********** *********** ********************* **************
consensus_11647#0 CAGCTGTTTGGTCAGTTCAGGCGTAAACGTGCATGACAACTCACGGCAGAAATTACCCTT 660
consensus_11647#1 CACCTTTTTGGTCAATTCAGGGGTAAACGTGCATGACAACTCTCGGCAGAAATTCCCCTT 211
** ** ******** ****** ******************** *********** *****
consensus_11647#0 CGTACGGGAGCATATTTTGTGATGTTAATACGGAAACCTGCTGTGTACCATCTGCCACGA 720
consensus_11647#1 TGTACGGGAGCATATTTTTTGATGTTAATACGGAAACCTTGTGTGTTCCATTTGCCACAA 271
***************** ******************** ***** **** ****** *
consensus_11647#0 TGCAGTTTAATTCTTGTGTGCATATTCATACTTTCGCCTTTCTAATCTGGAGTTTATCTG 780
consensus_11647#1 TCCAGTTTAATTTTTTTGTGCATATTCATACTTTCCCCTTTTTAATTTGGAGTTTATTTG 331
* ********** ** ******************* ***** **** ********** **
consensus_11647#0 GCTTTTGCTCATTTTGCTAACTGGCAGTAGTTTAGTGTTCATATATAGACGATGTAGAGG 840
consensus_11647#1 GCTTTTGCTCATTTTGCTAACTTGCAGTATTTTAGTGTTCATATATAAACGATGTAGAGG 391
********************** ****** ***************** ************
consensus_11647#0 CTTCAAATGATTGTTGCTAGAAATTTGGGATCTGGGTTTAGCAAAACATGTGGATCTTTT 900
consensus_11647#1 CTTCAAATGATTTTTTTTAGAAATTTGGGATTTGGGTT-----AAACATGTGGATTTTTT 446
************ ** ************** ****** ************ ****
consensus_11647#0 AGCCTATTTCTAACAAATTGTGAGCCAGTAACTATTGCTTGAAAACAAAAAAAAAAAAA 959
consensus_11647#1 AGCCTTTTTGGGAGAGGCGGCT------------------------------------- 468
***** *** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||