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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 976 fasta sequence
[CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG-GA--CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGACTAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTGTGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATTTTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAGACTCACCGTCGGCGAAAATGAATTTTCAC]
[-] EMBL AK066116 [CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTATGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGA ]
[-] EMBL AU166004 [ tttttTTTCACATCACAACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGG ]
[+] EMBL CB645510 [ ACACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAAAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAG ]
[-] EMBL CB645509 [ CACAAATTCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGAAGGCTGTGG ]
[+] EMBL AK108415 [ CCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCACAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCTCCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGGCGCCGGCTCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTCCCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCGCCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTGGCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGAGGAGGGAGGCAGAGG GA CCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCGCGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGACTAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTGTGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATTTTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAGACTCACCGTCGGCGAAAATGAATTTTCAC]
[-] EMBL C74140 [ CGCGCAACTGCCGCACCTCCTTCCTTGCGCCGCCGCCCCCTTCCCAACTCAGCAATGGAGANTGAAGGGAGGNTGGCGGCNGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGNATAGAGGAGGGAGGCAGAGGNGAANCC CG TACCGCGNACTTGCCTTCCGTCACCGTCGCCGCCGCG G TGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCCGCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCCTGTGGGGAGTGAGTAGGA ]
consensusID : consensus_11651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTCTACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAGCTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAGCTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCACCTCCTTCCCCCGCCGCCGCCTCCTTTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTAGCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGAGGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCCGTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGAGCAACCGCCGCTGCC]
[-] EMBL AU164017 [TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTCTACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAGCTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAGCTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCACCTCCTTCCCCCGCCGCCGCCTCCT ]
[-] EMBL OSC2501 [ TCTTCCCCGTGCNACTGCCGCACCTCCTTCNCCCGCCGCCGCCTCCATTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTAGCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGAGGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCCGTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGAGCAACCGCCGCTGCC]
consensusID : consensus_11651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTCNACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCANTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAGCTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNACT]
[-] EMBL C97153 [TTTTTTTTTTTTTTTTTTTTTCNACAAGTTCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCAAAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCTCCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCANTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTCCCCCGTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAGCTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11651#1 TTTTTTTTCCACAAATTAACACAAAAATTTCACATTGCAGCACAAATTC----TACAAGT 56
consensus_11651#2 ---------------------------TTTTTTTTTTTTTTTTTTTTTC----NACAAGT 29
consensus_11651#0 ---CCATCACAGATCCTAAATCCACAAATTCACACAAAAATTTCACATCACAACACAAAT 57
** ** **** *
consensus_11651#1 TCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCA 116
consensus_11651#2 TCCACATCACAGATCAAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGACATCA 89
consensus_11651#0 TCCACATCACAGATCGAGCACAAAAATTTTACATCACAAAGATTAAGAGGTGAGGCATCA 117
*************** ************************************** *****
consensus_11651#1 AAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCT 176
consensus_11651#2 AAGATCGAGCACAAAAAGTTTACATCACGAAGATTAAGAGGCGAGGATGGATTTGTTGCT 149
consensus_11651#0 CAGATCGAGCACAAAAATATTACATCACAAAGATTAAGAGGTGAGGATGGATTCGTTGCT 177
**************** ********* ************ *********** ******
consensus_11651#1 CCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAG 236
consensus_11651#2 CCCGAGGGAGGGCGTGGATGGCCGGCGGCGGATCCGCTCTCCCGGGGCTCGCCTGCGCAN 209
consensus_11651#0 CCCAAGGGAGGGCGTGGATGGCCGGCAGCGGATCCGCTCGCCGG-----CGCCGGC---- 228
*** ********************** ************ ** * **** **
consensus_11651#1 CTCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTC 296
consensus_11651#2 -TCTACTCCCCACTGCCCCTCCCACACGCCGGTGCTGCTGAGCACCGCAACTGCCCCCTC 268
consensus_11651#0 -TCTGCTCCCCACCGCCCCTCCCACGCGCCGGTGCCGCCGAGCGCCGCCACTGGCCCCTC 287
*** ******** *********** ********* ** **** **** **** ******
consensus_11651#1 CCCC-GTGCCACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGCCGGAG 355
consensus_11651#2 CCCC-GTGCNACTCCCAAGGACCGGTGGCGGTGGATCTGCCCTCCCAAGGCTCGNCGGAG 327
consensus_11651#0 CCCCCGTGCCTCTCCCGAGGACAGGCGGCGGCGGATCCACTCTCCCGAGGCTCGCCGGCG 347
**** **** ***** ***** ** ***** ***** * ***** ******* *** *
consensus_11651#1 CTAGATCCGCACCTCACCGCTGAGAACCGCCGCCACCCTCTTCCCCGTGCCACTGCCGCA 415
consensus_11651#2 CTAGATCCGCACCTCANCGCTGAGAANCGTCGGCAACCTCTTCCCCGTGGCAATGGCGNA 387
consensus_11651#0 CCAGATCCGCATCTCGTTGTCGAGAACCACCGCCGCTTCCTTCCCCGCGCCACTGCCGCA 407
* ********* *** * ***** * ** * ******** * ** ** ** *
consensus_11651#1 CCTCCTTCCCC-CGCCGCCGCCTCCTTTCCCACACAGCGGTGGGGAGTGAAGGGAGGCTA 474
consensus_11651#2 CT---------------------------------------------------------- 389
consensus_11651#0 CCTCCTTCCTTGCGCCGCCGCCCCCTTCCCCACTCAGCAATGGAGAGTGAAGGGAGGCTG 467
*
consensus_11651#1 GCGGCGGTGGAGAGAGAAGGGAGGCTGGCGGCCGTGGAGAGAGAAGGGAGGAGGGAGAGA 534
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 GCGGCGGTGGAGAAAGAAGGGAGGCTGGCGGCAATGGAGAGAGAAGGGAGGAGGGATAGA 527
consensus_11651#1 GGCGGAGGGACCGTGCNACCGGCNCGCTCGCCTTCCGTCGCCGCNACACGTTCTGTCGCC 594
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 GGAGGGAGGCAGAGGGACCGTGCGCTACCGCGCACTTGCCTTCCGTCACCGTCGCCGCCG 587
consensus_11651#1 GTCGCNGCNACACGCTGCTGTTGGAGCGCCGCGCCCCGCCACCCGAGAAACGCCGCCGGA 654
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 CGCGCTGCCGCTTGAGAACCGACGTGCGCTCGCGTTTTGTCACCGTCGCCGCCACAAGCC 647
consensus_11651#1 GCAACCGCCGCTGCC--------------------------------------------- 669
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 GCTGCTGGAGCCACCGCGCGCCGTCGCCCGAGAACCGTCGTCGGAGCTGCCGCCGCCGCC 707
consensus_11651#1 ------------------------------------------------------------
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 TGTGGGGAGTGAGTAGGAGGGTGCATCTGGAGGGAGGAAGAGGAACAAGAGGATAAGGAC 767
consensus_11651#1 ------------------------------------------------------------
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 TAGGTGGATAAGGAGTGGTGGGTGGTGATTTTTTAATGGGCGGTGATATTTTTAAGTGTG 827
consensus_11651#1 ------------------------------------------------------------
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 TGATTTTTTTAAGTGCGGCGTTTAAACGCTGGCGGTAGGTTAAGAAGCAATAGGGTTATT 887
consensus_11651#1 ------------------------------------------------------------
consensus_11651#2 ------------------------------------------------------------
consensus_11651#0 TTTTGAAATGGACTTCTTAACCAACCTCAAGCGAAAACGGATTTTCACTTGTGGTCCTAG 947
consensus_11651#1 -----------------------------
consensus_11651#2 -----------------------------
consensus_11651#0 ACTCACCGTCGGCGAAAATGAATTTTCAC 976
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||