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Oryza sativa
cluster # 11666 cluster # 11666       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11666#0 length = 1990 sequences # 3  
consensus_11666#1 length = 878 sequences # 4  
consensus_11666#2 length = 528 sequences # 1  
consensus_11666#3 length = 173 sequences # 1  

consensusID : consensus_11666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1990
fasta sequence
                              [GAGTAGAAAATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCTACTGCCAAATCTTGATATCTTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTGTTCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTACAGCCCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTATTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTNGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGTAAGACCTCTCCCCCCTTGAGCGCTCCTGTTGTTTCTAAATCTGATTTATATATTTTAACTTAGGACTTTGATATTCATAAAATTTTGTAGTAACTTTTTTTAGATAATGGGAAATTGTTAGAGCAAGTAAGTACGATACTTTTTCTCCTGTGTCCCTCAATTTAAGTAGGTTAAACATTGTCTGACGGGTGAAAGACTTGAATAGGTGAACATAGCATTGAATTTGGTGGATAATAATAGTGTTTTATATGCATGAAAAAGATAGAATTTGTATGTCAGGCGATTTGCCTAATGCAATCCTAATTTTACTCCTAAAATTACATTTGAGCAATTTGTGTACTGAATATTAGAATTTTGCTCCCAACTAAACTTTAATTCCGGTATTGTTCTTATTTTGTTATGTACAGGTTCTTGGATACTGTGACTGTGACCATCGTACAATCAAATCGATATAAAAACACTAATGTTAATAGTAAATTAGAATTGAACGAAATGCACGCGAAGTTAGCGTAGGCCATGAGAGATGGATTGTGGTTTCTCACATAATAAAGAGTTAATTTAATCCATGCCATTATAATCAGCAGCACCTCTTAAACAGTTTGGTAAAGGAATAAGTTCATTTTACACCCAGCTTTAAAATGGCTTATTTAACATATTTGTGTTATGTAGTACTCCCTCTGATCAAGATTACATGACGTTTCCGACAGCCAAAACCTATTAAGCGCAATTCATTTTGTTTGTTCAAAGCATCAAATAATATCGTCCGGAGGTAGTACTATGACAAACATACCTTGGAGAAAATTTCCTACTTGTATTAATAAAGGAGGAACTTGAGTGTGTATTTACAAGGTATGCCCAGGACACGTGCACAAAAATACTGTTCTCACAAAGTCTGCTTCTTGGTCGCTGCCACTACTCTCTCTGTGATATCCACATTTTTTTTCTGAAAGAATAAATTAGGGTGCACATAAGCTTTCATATTTAACAGTCCCCTTTTTCAGATTCAGTATCTCGATCATTCCCTTGTTAGTTTCCTTTGTTTATGTCTCAAACATTTGATATGGAAACAGGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTAT]

[+] EMBL CF333914             [GAGTAGAAAATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCTACTGCCAAATCTTGATATCTTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTGTTCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTACAGCCCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTCTTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTNGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF336069             [                                              TGTGGTTTTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCTACTGCCAAATCTTGATATCTTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTGTTCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTACAGCCCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK069432             [                                                                                                                     CCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCTACTGCCAAATCTTGATATCTTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTGTTCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTACAGCCCTGCCGTTTTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCGACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGT GGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGTAAGACCTCTCCCCCCTTGAGCGCTCCTGTTGTTTCTAAATCTGATTTATATATTTTAACTTAGGACTTTGATATTCATAAAATTTTGTAGTAACTTTTTTTAGATAATGGGAAATTGTTAGAGCAAGTAAGTACGATACTTTTTCTCCTGTGTCCCTCAATTTAAGTAGGTTAAACATTGTCTGACGGGTGAAAGACTTGAATAGGTGAACATAGCATTGAATTTGGTGGATAATAATAGTGTTTTATATGCATGAAAAAGATAGAATTTGTATGTCAGGCGATTTGCCTAATGCAATCCTAATTTTACTCCTAAAATTACATTTGAGCAATTTGTGTACTGAATATTAGAATTTTGCTCCCAACTAAACTTTAATTCCGGTATTGTTCTTATTTTGTTATGTACAGGTTCTTGGATACTGTGACTGTGACCATCGTACAATCAAATCGATATAAAAACACTAATGTTAATAGTAAATTAGAATTGAACGAAATGCACGCGAAGTTAGCGTAGGCCATGAGAGATGGATTGTGGTTTCTCACATAATAAAGAGTTAATTTAATCCATGCCATTATAATCAGCAGCACCTCTTAAACAGTTTGGTAAAGGAATAAGTTCATTTTACACCCAGCTTTAAAATGGCTTATTTAACATATTTGTGTTATGTAGTACTCCCTCTGATCAAGATTACATGACGTTTCCGACAGCCAAAACCTATTAAGCGCAATTCATTTTGTTTGTTCAAAGCATCAAATAATATCGTCCGGAGGTAGTACTATGACAAACATACCTTGGAGAAAATTTCCTACTTGTATTAATAAAGGAGGAACTTGAGTGTGTATTTACAAGGTATGCCCAGGACACGTGCACAAAAATACTGTTCTCACAAAGTCTGCTTCTTGGTCGCTGCCACTACTCTCTCTGTGATATCCACATTTTTTTTCTGAAAGAATAAATTAGGGTGCACATAAGCTTTCATATTTAACAGTCCCCTTTTTCAGATTCAGTATCTCGATCATTCCCTTGTTAGTTTCCTTTGTTTATGTCTCAAACATTTGATATGGAAACAGGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTAT]


>consensus_11666#0 GAGTAGAAAATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGC CGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCA CAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTC CAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCT ACTGCCAAATCTTGATATCTTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTGT TCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTACAGCCCTGCCGTTCTTTGGGATG ATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTG CCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCG AGCCACCTCGTCGGCTCCGGTGGCCACAGCTATTTGGACGTCAGGACAGAAGAGGAATTC AAGAAGGGACATGTNGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGG GAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAA CATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGC AGCCGTAAGACCTCTCCCCCCTTGAGCGCTCCTGTTGTTTCTAAATCTGATTTATATATT TTAACTTAGGACTTTGATATTCATAAAATTTTGTAGTAACTTTTTTTAGATAATGGGAAA TTGTTAGAGCAAGTAAGTACGATACTTTTTCTCCTGTGTCCCTCAATTTAAGTAGGTTAA ACATTGTCTGACGGGTGAAAGACTTGAATAGGTGAACATAGCATTGAATTTGGTGGATAA TAATAGTGTTTTATATGCATGAAAAAGATAGAATTTGTATGTCAGGCGATTTGCCTAATG CAATCCTAATTTTACTCCTAAAATTACATTTGAGCAATTTGTGTACTGAATATTAGAATT TTGCTCCCAACTAAACTTTAATTCCGGTATTGTTCTTATTTTGTTATGTACAGGTTCTTG GATACTGTGACTGTGACCATCGTACAATCAAATCGATATAAAAACACTAATGTTAATAGT AAATTAGAATTGAACGAAATGCACGCGAAGTTAGCGTAGGCCATGAGAGATGGATTGTGG TTTCTCACATAATAAAGAGTTAATTTAATCCATGCCATTATAATCAGCAGCACCTCTTAA ACAGTTTGGTAAAGGAATAAGTTCATTTTACACCCAGCTTTAAAATGGCTTATTTAACAT ATTTGTGTTATGTAGTACTCCCTCTGATCAAGATTACATGACGTTTCCGACAGCCAAAAC CTATTAAGCGCAATTCATTTTGTTTGTTCAAAGCATCAAATAATATCGTCCGGAGGTAGT ACTATGACAAACATACCTTGGAGAAAATTTCCTACTTGTATTAATAAAGGAGGAACTTGA GTGTGTATTTACAAGGTATGCCCAGGACACGTGCACAAAAATACTGTTCTCACAAAGTCT GCTTCTTGGTCGCTGCCACTACTCTCTCTGTGATATCCACATTTTTTTTCTGAAAGAATA AATTAGGGTGCACATAAGCTTTCATATTTAACAGTCCCCTTTTTCAGATTCAGTATCTCG ATCATTCCCTTGTTAGTTTCCTTTGTTTATGTCTCAAACATTTGATATGGAAACAGGGAT TCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGG TGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGA CTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAA ACAATGTTAT



consensusID : consensus_11666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 878
fasta sequence
                              [CACAGACTTATCAGGTATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTACCCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGG-CGAG-CCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAGGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTATTCCCCAAGTAGAATATTTTATTTAGTTTGATATAAAGCAATTGTTACTAAAAAAAAA]

[+] EMBL CF332906             [CACAGACTTATCAGGTATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTACCCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGG CGAG CCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAGGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAG                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CF332905             [                                                                                                                                                                                                                                                        TCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCCGAGCCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAGGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTAaaaaa                                                     ]
[-] EMBL CF333915             [                                                                                                                                                                                                                                                                                                                                                                                                                 TGGCCACAGCTACTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAAGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTATTCCCCAAGTAGAATATTTTATTTAGTTTGATATAAAGCAATTGTTACTAAAAAAAAA]
[-] EMBL CF336068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATTTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTGAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTATTCCCCAAGTAGAATATTTTATTTAGTTTGATATAAAaaaaaaaa             ]


>consensus_11666#1 CACAGACTTATCAGGTATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTT TTTTGGCCGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAG GCACCCACAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTG CTACTTCCAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAC CCTGCCGTTCTTTGGGATGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCAT CTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGAC CGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGT CAGGACAGAGGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCT CTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCA TTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGC ATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACAT GGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTT TCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGA TTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTATTCCCCAAGTAGAATATTTT ATTTAGTTTGATATAAAGCAATTGTTACTAAAAAAAAA



consensusID : consensus_11666#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence
                              [AAAAAAAAAAAACTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTAT]

[+] EMBL AK119900             [AAAAAAAAAAAACTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTAT]


>consensus_11666#2 AAAAAAAAAAAACTTGGCTGTTCCGCTGCTGCCAGCGCTCGGCTCGGAGCCGCCGTCGAC ACCGGTGCCGACCGTTGGCGTGACGGCGGCGAGCCACCTCGTCGGCTCCGGTGGCCACAG CTACTTGGACGTCAGGACAGAAGAGGAATTCAAGAAGGGACATGTGGAGAATTCTCTTAA TGTGCCATTCCTCTTCTTTACCCCTCAAGGGAAGGAAAAGAACACAAAGTTCATAGAGCA GGTGGCATTGCATTATGATAAGGAGGACAACATAATTGTGGGTTGCCTAAGTGGAGTAAG ATCTGAACTAGCATCTGCCGATCTCATAGCAGCCGGATTCAAAAATGTAAAGAACATGGA AGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGA AGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGG GTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTAT



consensusID : consensus_11666#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence
                              [TGGACTGAAGGAGTAGAAAAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF319634             [TGGACTGAAGGAGTAGAAAAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGAAAACAATGTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11666#3 TGGACTGAAGGAGTAGAAAAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTA TTTTTAGATAATGACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGG AAAGGTATAAGAAAACAATGTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11666#0      GAGTAGAAAATAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGC 60
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      CGATCCCAGACCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCA 120
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      -------------------------------------------CACAGACTTATCAGGTA 17
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      CAGAACTTTCGTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTC 180
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      TAGAACGGTCGCCCTGAAAGTCTGAAACCTGGGAGCTGTGGTTTTTTGGCCGATCCCAGA 77
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      CAGCCACAAGCAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTAGTAACTCT 240
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      CCAGCATCAATACTCCCAAAGTCCCATACTCCAGAGGAGGCAGGCACCCACAGAACTTTC 137
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      ACTGCCAAATCTTGATATC-TTGAAAGCTTTCAATTCAGCTTGCAATATATCAATACCTG 299
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      GTTGCCGACTGCGGCTGCAACCGGAATGTAGCCGGCCTGTGTGCTACTTCCAGCCACAAG 197
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TTCCCCTTTCCTAATTCCTACCCTTCCTCCTCGTGCTA-CAGCCCTGCCGTTCTTTGGGA 358
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      CAGAGGCCGCGACATTAATCTCACAGGAAATCTAGTCGTCTACCCTGCCGTTCTTTGGGA 257
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGC 418
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      TGATGATGATGGTGAGATTGCCTGCTATGTTCGTGATCTGCATCTTGGCTGTTCCGCTGC 317
consensus_11666#2      -------------------------------AAAAAAAAAAAACTTGGCTGTTCCGCTGC 29
                                                                                   

consensus_11666#0      TGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGG 478
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      TGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGG 377
consensus_11666#2      TGCCAGCGCTCGGCTCGGAGCCGCCGTCGACACCGGTGCCGACCGTTGGCGTGACGGCGG 89
                                                                                   

consensus_11666#0      CGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTATTTGGACGTCAGGACAGAAGAGGAAT 538
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      CGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAGGAGGAAT 437
consensus_11666#2      CGAGCCACCTCGTCGGCTCCGGTGGCCACAGCTACTTGGACGTCAGGACAGAAGAGGAAT 149
                                                                                   

consensus_11666#0      TCAAGAAGGGACATGTNGGAGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAA 598
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      TCAAGAAGGGACATGTGG-AGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAA 496
consensus_11666#2      TCAAGAAGGGACATGTGG-AGAATTCTCTTAATGTGCCATTCCTCTTCTTTACCCCTCAA 208
                                                                                   

consensus_11666#0      GGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGAC 658
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      GGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGAC 556
consensus_11666#2      GGGAAGGAAAAGAACACAAAGTTCATAGAGCAGGTGGCATTGCATTATGATAAGGAGGAC 268
                                                                                   

consensus_11666#0      AACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATA 718
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      AACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATA 616
consensus_11666#2      AACATAATTGTGGGTTGCCTAAGTGGAGTAAGATCTGAACTAGCATCTGCCGATCTCATA 328
                                                                                   

consensus_11666#0      GCAGCCGTAAGACCTCTCCCCCCTTGAGCGCTCCTGTTGTTTCTAAATCTGATTTATATA 778
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      GCAGCCGGA----TTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGA 672
consensus_11666#2      GCAGCCGGA----TTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGA 384
                                                                                   

consensus_11666#0      TTTTAACTTAGGACTTTGATATTCATAAAATTTTGTAGTAACTTTTTTTAGATAATGGGA 838
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      AAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTA 732
consensus_11666#2      AAATGGCCTTGCGGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTA 444
                                                                                   

consensus_11666#0      AATTGTTAGAGCAAGTAAGTACGATACTTTTTCTCCTGTGTCCCTCAATTTAAGTAGGTT 898
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      --TTTTTAGA-TAATGACTTTCAGTTATTGTATGACTGGGTG--TTAATTTGATTTGTAG 787
consensus_11666#2      --TTTTTAGA-TAATGACTTTCAGTTATTGTATGACTGGGTG--TTAATTTGATTTGTAG 499
                                                                                   

consensus_11666#0      AAACATTGTCTGACGGGTGAAAGACTTGAATAGGTGAACATAGCATTGAATTTGGTGGAT 958
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      AAAGGAAAGGT-ATAAGAAAACAATGTTATATTATTCCCCAAGTAGAATATTTTATTTAG 846
consensus_11666#2      AAAGGAAAGGT-ATAAGAAAACAATGTTAT------------------------------ 528
                                                                                   

consensus_11666#0      AATAATAGTGTTTTATATGCATGAAAAAGATAGAATTTGTATGTCAGGCGATTTGCCTAA 1018
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      TTTGATATAAAGCAATTGTTACTAAAAAAAAA---------------------------- 878
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TGCAATCCTAATTTTACTCCTAAAATTACATTTGAGCAATTTGTGTACTGAATATTAGAA 1078
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TTTTGCTCCCAACTAAACTTTAATTCCGGTATTGTTCTTATTTTGTTATGTACAGGTTCT 1138
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TGGATACTGTGACTGTGACCATCGTACAATCAAATCGATATAAAAACACTAATGTTAATA 1198
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GTAAATTAGAATTGAACGAAATGCACGCGAAGTTAGCGTAGGCCATGAGAGATGGATTGT 1258
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GGTTTCTCACATAATAAAGAGTTAATTTAATCCATGCCATTATAATCAGCAGCACCTCTT 1318
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      AAACAGTTTGGTAAAGGAATAAGTTCATTTTACACCCAGCTTTAAAATGGCTTATTTAAC 1378
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      ATATTTGTGTTATGTAGTACTCCCTCTGATCAAGATTACATGACGTTTCCGACAGCCAAA 1438
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      ACCTATTAAGCGCAATTCATTTTGTTTGTTCAAAGCATCAAATAATATCGTCCGGAGGTA 1498
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GTACTATGACAAACATACCTTGGAGAAAATTTCCTACTTGTATTAATAAAGGAGGAACTT 1558
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GAGTGTGTATTTACAAGGTATGCCCAGGACACGTGCACAAAAATACTGTTCTCACAAAGT 1618
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      CTGCTTCTTGGTCGCTGCCACTACTCTCTCTGTGATATCCACATTTTTTTTCTGAAAGAA 1678
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      TAAATTAGGGTGCACATAAGCTTTCATATTTAACAGTCCCCTTTTTCAGATTCAGTATCT 1738
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      CGATCATTCCCTTGTTAGTTTCCTTTGTTTATGTCTCAAACATTTGATATGGAAACAGGG 1798
consensus_11666#3      ------------------------------------------------------------
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      ATTCAAAAATGTAAAGAACATGGAAGGAGGTTACATGGCATGGGTGGAAAATGGCCTTGC 1858
consensus_11666#3      ----------------------------------------TGGACTGAAG--------GA 12
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GGTGAATAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAAT 1918
consensus_11666#3      GTAGAAAAAACCTCTAGTGCAAGAAGAGCTCTAGTTTCAGTTATTGTATTTTTAGATAAT 72
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      GACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGA 1978
consensus_11666#3      GACTTTCAGTTATTGTATGACTGGGTGTTAATTTGATTTGTAGAAAGGAAAGGTATAAGA 132
consensus_11666#1      ------------------------------------------------------------
consensus_11666#2      ------------------------------------------------------------
                                                                                   

consensus_11666#0      AAACAATGTTAT----------------------------- 1990
consensus_11666#3      AAACAATGTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAA 173
consensus_11666#1      -----------------------------------------
consensus_11666#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)