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Oryza sativa
cluster # 11675 cluster # 11675       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11675#0 length = 1421 sequences # 4  
consensus_11675#1 length = 780 sequences # 2  
consensus_11675#2 length = 663 sequences # 2  
consensus_11675#3 length = 611 sequences # 1  

consensusID : consensus_11675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1421
fasta sequence
                              [GCTNGCAA-CAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAACTCCAATCCTCATTCCATTTCCATATTCCGTCTNTCTNTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCNCNTGGAGAGNCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGNAAGTCTCAGGGCGCGNCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGTCGCTCTATGCAAACAAGGTGGCAGCACTACTAACACTAGTGTTTGTAATTGTGGTGAATTTGGCTCTTGGGATACTTCCCAGGGTAGATAACTTTGCGCACATTGGGGGCCTTATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAAC-CTGCTCCTGTGAAACGCAAGCACAAGA-CATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACGAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAGTGCCATTTATATAAAAAA]

[+] EMBL OSS4513A             [GCTNGCAA CAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAACTCCAATCCTCATTCCATTTCCATATTCCGTCTNTCTNTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCNCNTGGAGAGNCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGNAAGTCTCAGGGCGCGNCCCTACTACCGCCGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK109134             [  tgGCAAGCAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAACTCCAATCCTCATTCCATTTCCATATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGTCGCTCTATGCAAACAAGGTGGCAGCACTACTAACACTAGTGTTTGTAATTGTGGTGAATTTGGCTCTTGGGATACTTCCCAGGGTAGATAACTTTGCGCACATTGGGGGCCTTATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAAC CTGCTCCTGTGAAACGCAAGCACAAGA CATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTAAACTTGACATGTGAAGGCA AAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAGTG                ]
[-] EMBL CF316687             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTTTGCGCACATTGGGGGCCTTATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAACNCTGCTCCTGTGAAACGCAAGCACAAGANCATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACGAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAGTGCCATTTATATAAAAAA]
[-] EMBL CF316959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACGAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAGTGCCATTTATATAAAAAA]


>consensus_11675#0 GCTNGCAACAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAACTCCAATC CTCATTCCATTTCCATATTCCGTCTNTCTNTCTCCAAGTCCCATGAAGCCGTCTCCCGCC GCCAACCTGGACGTCCNCNTGGAGAGNCCTAGGCCACCGCCGGTGCACCCTCACCGGCCG GNAAGTCTCAGGGCGCGNCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATC GCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGC AACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAG AATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACT AAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTGGA GTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAA GAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTG ATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGTTGGTGCCTCTGGTGCTTTGTTTGGA TTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGTCGCTCTATGCAAACAAGGTG GCAGCACTACTAACACTAGTGTTTGTAATTGTGGTGAATTTGGCTCTTGGGATACTTCCC AGGGTAGATAACTTTGCGCACATTGGGGGCCTTATATCCGGGTTCCTTCTTGGATTTGTT ATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAA CCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAGCTGCTGCC ATTATGCTAATTGTCGGATTTACAGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCA AACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGC AACTCATCACCAACATATTGCACGGTAATGCAACGAGCGAATACATTAAACTTGACATGT GAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAAC CAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGC TTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACA TCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACT ACACCGATTGAATCTATGCAGAGTGCCATTTATATAAAAAA



consensusID : consensus_11675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 780
fasta sequence
                              [GGGGCGGGATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTGATTGTCGGATTTACAGTGGCTATAGTTCTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGANTCNNNNNANANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGGGGGGGGGCGGGCCCAAACCCCCCAAGGGGGGAAACCCCCCCCCCGCGCGGGTTTCAAAGGGGGGGGAAACCGGGGTCACATAATGG]

[+] EMBL BE040237             [GGGGCGGGATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTGATTGTCGGATTTACAGTGGCTATAGTTCTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGANTCNNNNNANANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGGGGGGGGGCGGGCCCAAACCCCCCAAGGGGGGAAACCCCCCCCCCGCGCGGGTTTCAAAGGGGGGGGAAACCGGGGTCACATAATGG]
[+] EMBL CF196226             [                                                                                 CACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTACAGTGGCTATAGTTCTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGNNTTGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTC                                                                                                                                                                                                                                                                                           ]


>consensus_11675#1 GGGGCGGGATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGCAT GGATTAATCAGAGAAGAGTAGCACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCACA AGACATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTGATTGTCGGATTTACAG TGGCTATAGTTCTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCACT ATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCACGG TAATGCAACAAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCT ACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTT AGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTAGT ATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATAGA AAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGANTCNNNNNANANAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGGGGGGGGGCGGGCCCAAACCCCCCAAG GGGGGAAACCCCCCCCCCGCGCGGGTTTCAAAGGGGGGGGAAACCGGGGTCACATAATGG



consensusID : consensus_11675#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence
                              [TGGACTGAAGGAGTAGAAAAATCCTCATTCCTTTCCTATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTNGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGGTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGT]

[+] EMBL CF316686             [TGGACTGAAGGAGTAGAAAAATCCTCATTCCTTTCCTATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTNGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGGTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATTGGT]
[+] EMBL CF316958             [                           TTCCTTTCCTATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTATGTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTCGCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAGATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACATGCATCTGGCTTCATGCTGGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGGNAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGGTGGGACTTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGtt                                                                 ]


>consensus_11675#2 TGGACTGAAGGAGTAGAAAAATCCTCATTCCTTTCCTATTCCGTCTGTCTGTCTCCAAGT CCCATGAAGCCGTCTCCCGCCGCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCG CCGGTGCACCCTCACCGGCCGGGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACG CCCTGGATCGTCGCCGCCATCGCCCTCTCCTGCGTCGTCGTCTTCCTCGTCTCCATGTAT GTCAACGATTGCCCCCGCCGCAACTCCGGGGACTGCGCCGCCGGCTTCCTCGGCCGCTTC GCCTTCCAGCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCACGTTACTGAAG ATGGGAGCTCTAGATGTAACTAAGGTTGTCCATGGTCACCAAGGATGGCGTCTAATTACA TGCATCTGGCTTCATGCTNGGAGTTGTTCATTTGCTCATCAATATGCTATGCCTTCTATT TATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGTCTGGTTTATCTCAT CTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCAAGTATCTCTGGTTG GTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGAACTCATAACGAATT GGT



consensusID : consensus_11675#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGCGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGCTGCGAGCTTGATGTCTGCCCTCTTCTTCCGATCAAGTCTCTCTGTTGGTGCCTCTGGTGCTTTGTTTGCATTGATTGCGCCCCTGCTTTCTGATCTCATAACGACTTGGTCTCTCTATGCACACGCGGTGCCCCCTCTACTCCCACTACTGTTTGTACCTGTGGTGACTTTGCCTCTTGGGATCCCTCCGCCTGCCCCTCTCTTTTGCCTCCTTGTCGCCCTTATCTCCCCCCTCCTTCTTGCATTTGCTCTTCCTTCCCTCCCCCTCCCCCCCCCCGCTCTCCCTCCCTCCCCTTCCCCCCTCTGCCCCCCTCCCTCCTCCCCGCCCGCGGCCGCCCCTGCGTCCCCCTCCTGTTCGCGCGCCCTCGGCTCTCCTCCCCTTCGCCTCCCGGCCCTCTCTCGTGTGCTCTTTCCCTGTCCTCCCCCCCTCTTCCTCCTCTCCGCCCCTCGTCCCC]

[+] EMBL CA756367             [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGCGTTTGTGAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGCTGCGAGCTTGATGTCTGCCCTCTTCTTCCGATCAAGTCTCTCTGTTGGTGCCTCTGGTGCTTTGTTTGCATTGATTGCGCCCCTGCTTTCTGATCTCATAACGACTTGGTCTCTCTATGCACACGCGGTGCCCCCTCTACTCCCACTACTGTTTGTACCTGTGGTGACTTTGCCTCTTGGGATCCCTCCGCCTGCCCCTCTCTTTTGCCTCCTTGTCGCCCTTATCTCCCCCCTCCTTCTTGCATTTGCTCTTCCTTCCCTCCCCCTCCCCCCCCCCGCTCTCCCTCCCTCCCCTTCCCCCCTCTGCCCCCCTCCCTCCTCCCCGCCCGCGGCCGCCCCTGCGTCCCCCTCCTGTTCGCGCGCCCTCGGCTCTCCTCCCCTTCGCCTCCCGGCCCTCTCTCGTGTGCTCTTTCCCTGTCCTCCCCCCCTCTTCCTCCTCTCCGCCCCTCGTCCCC]


>consensus_11675#3 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGCGTTTGT GAGGATTGGTCTGGTTTATCTCATCTCTGGTCTTGCTGCGAGCTTGATGTCTGCCCTCTT CTTCCGATCAAGTCTCTCTGTTGGTGCCTCTGGTGCTTTGTTTGCATTGATTGCGCCCCT GCTTTCTGATCTCATAACGACTTGGTCTCTCTATGCACACGCGGTGCCCCCTCTACTCCC ACTACTGTTTGTACCTGTGGTGACTTTGCCTCTTGGGATCCCTCCGCCTGCCCCTCTCTT TTGCCTCCTTGTCGCCCTTATCTCCCCCCTCCTTCTTGCATTTGCTCTTCCTTCCCTCCC CCTCCCCCCCCCCGCTCTCCCTCCCTCCCCTTCCCCCCTCTGCCCCCCTCCCTCCTCCCC GCCCGCGGCCGCCCCTGCGTCCCCCTCCTGTTCGCGCGCCCTCGGCTCTCCTCCCCTTCG CCTCCCGGCCCTCTCTCGTGTGCTCTTTCCCTGTCCTCCCCCCCTCTTCCTCCTCTCCGC CCCTCGTCCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11675#2      ---------------------------------------TGGACTGAAGGAGTAGAAAAA 21
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      GCTNGCAACAAACTCCAATTCATTCATCAACCGCCGTCTCTTCCATTCTCAACTCCAATC 60
consensus_11675#1      ------------------------------GGGGCGGGATATCCGGGTTCCTTCTTGGAT 30
                                                                                   

consensus_11675#2      TCCTCATTCCTTTCCTATTCCGTCTGTCTGTCTCCAAGTCCCATGAAGCCGTCTCCCGCC 81
consensus_11675#3      ---------------------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 39
consensus_11675#0      CTCATTCCATTTCCATATTCCGTCTNTCTNTCTCCAAGTCCCATGAAGCCGTCTCCCGCC 120
consensus_11675#1      TTGTTATGTTTATTCGTCCACAGTTTGCATGGATTAATCAGAGAAGAGTAGCACCTGGAC 90
                                                           *         **         *  

consensus_11675#2      GCCAACCTGGACGTCCGCGTGGAGAGGCCTAGGCCACCGCCGGTGCACCCTCACCGGCCG 141
consensus_11675#3      AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTTCTATTTATCGGCATTCGACT 99
consensus_11675#0      GCCAACCTGGACGTCCNCNTGGAGAGNCCTAGGCCACCGCCGGTGCACCCTCACCGGCCG 180
consensus_11675#1      AACAACCTGCTCCTGTGAAACGCAAGCACAAGACATACCAATATATACTGTGGTTAGCTG 150
                           *                *  **    **     *     *  *         *   

consensus_11675#2      GGAAGTCTCAGGGCGCGCCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCAT- 200
consensus_11675#3      TGAA---CAAGAGTTTGCGTTTGTGAGGATTGGTC--TGGTTTATCTCATCTCTGGTCT- 153
consensus_11675#0      GNAAGTCTCAGGGCGCGNCCCTACTACCGCCGATGGACGCCCTGGATCGTCGCCGCCAT- 239
consensus_11675#1      CTGCCATTATGCTGATTGTCGGATTTACAGTGGCTATAGTTCTGCTTCTCCGAGGATATA 210
                                 *                    *      *   *   **  *   *   * 

consensus_11675#2      -CGCCCTCTCCT--GCGTCGTCGTCTTCCTCGTCT--CCATGTATGTCAACG--ATTGCC 253
consensus_11675#3      -TGCTGCGAGCT--TGATGTCTGCCCTCTTCTTCCGATCAAGTCTCTCTGTT--GGTGCC 208
consensus_11675#0      -CGCCCTCTCCT--GCGTCGTCGTCTTCCTCGTCT--CCATGTATGTCAACG--ATTGCC 292
consensus_11675#1      ATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGA 270
                         **      *      *    *      *           **   *         **  

consensus_11675#2      CCCGCCGC---AACTCCGGGGACTGCGCCGCC-GGCTTCCTC-GGCCGCTTCGCCTTCCA 308
consensus_11675#3      TCTGGTGCTTTGTTTGCATTGATTGCGCC-CC-TGCTTTCT--GATCTCATAACGACTTG 264
consensus_11675#0      CCCGCCGC---AACTCCGGGGACTGCGCCGCC-GGCTTCCTC-GGCCGCTTCGCCTTCCA 347
consensus_11675#1      AATGCAACTCATCACCAACATATTGCACGGTAATGCAACAAGCGAATACATTA-AACTTG 329
                          *   *             * *** *      **       *    * *         

consensus_11675#2      GCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCAC-GTTACTGAAGATGGGAG 367
consensus_11675#3      GTCTCTCTATGCACACGCGGTGCCCC-CTCTACTCCCACTACTGTTTGTACCTGTGGTGA 323
consensus_11675#0      GCCGCTCAAGGAGAATCCCCTCCTCGGCCCTTCCTCCGCCAC-GTTACTGAAGATGGGAG 406
consensus_11675#1      ACATGTGAAGGCACAAACGTACACCGGAGCTACCTT-ATAGCGGATGCCACGCAAGATAA 388
                            *  * *   *  *      *    ** *        * * *         *    

consensus_11675#2      CTCTA------GATGTAACTAAGGTTGTCCATGGTC--ACCAAGGATGGCGTC-----TA 414
consensus_11675#3      CTTTG------CCTCTTGGGATCCCTCCGCCTGCCC--CTCTCTTTTGCCTCC-----TT 370
consensus_11675#0      CTCTA------GATGTAACTAAGGTTGTCCATGGTC--ACCAAGGATGGCGTC-----TA 453
consensus_11675#1      GATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGTT 448
                                    *      *    *     *        *     *  *  *     * 

consensus_11675#2      ATTACATGCATCTGGCT--TCATGCTNGGAGT-TGTTCATTTGCTCATCAATATGCTAT- 470
consensus_11675#3      GTCGCCCTTATCTCCCCCCTCCTTCTTGCATT-TGCTCTTCCTTCCCTCCCCCTCCCCCC 429
consensus_11675#0      ATTACATGCATCTGGCT--TCATGCTGG-AGT-TGTTCATTTGCTCATCAATATGCTAT- 508
consensus_11675#1      GATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACAT 508
                                 *        *  * ** * * * *   * *       **    *      

consensus_11675#2      ----GCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGT 526
consensus_11675#3      CCCCGCTCTCCCTCCCTCCCCTTCCCCCCTCTGCCCCCCTCCCTCCTCCCCGCCCGCGGC 489
consensus_11675#0      ----GCCTTCTATTTATCGGCATTCGACTTGAACAAGAGTTTGGGTTTGTGAGGATTGGT 564
consensus_11675#1      GAATACATCATGTTTGACAGACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAA 568
                            *      *    *                     *                    

consensus_11675#2      CTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCA 586
consensus_11675#3      CGCCCCTGCGTC-CCCCTCCTGTTCGCGCGCCCTCGGCTCTCCTCCCCTTCGCCTC-CCG 547
consensus_11675#0      CTGGTTTATCTCATCTCTGGTCTTGGTGGGAGCTTGATGTCTGCCCTCTTCATCCGATCA 624
consensus_11675#1      GAATACTACACCGATTGANTCNNNNNANANANNNNNNNNNNNNNNNNNNNNNNNNNNNNN 628
                             *    *                                                

consensus_11675#2      AGTATCTCTGGTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGA 646
consensus_11675#3      GCCCTCTCTCGTGTGCTCTTTCCCTGTCCTCCCCCCCTCTTCCTCCTCTCCGCCCCTCGT 607
consensus_11675#0      AGTATCTCT-GTTGGTGCCTCTGGTGCTTTGTTTGGATTGATTGGGTCCATGCTTTCTGA 683
consensus_11675#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA 688
                                                                                   

consensus_11675#2      ACTCATAACGAATTGGT------------------------------------------- 663
consensus_11675#3      CCCC-------------------------------------------------------- 611
consensus_11675#0      ACTCATAACGAATTGGTCGCTCTATGCAAACAAGGTGGCAGCACTACTAACACTAGTGTT 743
consensus_11675#1      ACTGGGGGGGGGGCGGGCCCAAACCCCCCAAGGGGGGAAACCCCCCCCCCGCGCGGGTTT 748
                        *                                                          

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      TGTAATTGTGGTGAATTTGGCTCTTGGGATACTTCCCAGGGTAGATAACTTTGCGCACAT 803
consensus_11675#1      CAAAGGGGGGGGAAACCGGGGTCACATAATGG---------------------------- 780
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      TGGGGGCCTTATATCCGGGTTCCTTCTTGGATTTGTTATGTTTATTCGTCCACAGTTTGC 863
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      ATGGATTAATCAGAGAAGAGTAGCACCTGGACAACAACCTGCTCCTGTGAAACGCAAGCA 923
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      CAAGACATACCAATATATACTGTGGTTAGCTGCTGCCATTATGCTAATTGTCGGATTTAC 983
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      AGTGGCTATAGTACTGCTTCTCCGAGGATATAATGCAAACGACCACTGCTCTTGGTGTCA 1043
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      CTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCAACATATTGCAC 1103
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      GGTAATGCAACGAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAG 1163
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      CTACCTTATAGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAG 1223
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      TTAGCAGAATCTTGGTTCCCTCCCTGAGTTGATCTGCTTGTAAAAATACTACTACTAGTA 1283
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      GTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACAGACAGAGAATA 1343
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------------------------------------------------
consensus_11675#3      ------------------------------------------------------------
consensus_11675#0      GAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAG 1403
consensus_11675#1      ------------------------------------------------------------
                                                                                   

consensus_11675#2      ------------------
consensus_11675#3      ------------------
consensus_11675#0      TGCCATTTATATAAAAAA 1421
consensus_11675#1      ------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)