|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1471 fasta sequence
[AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGTTGGGAGCGGCTCCAATTTCATCCGATGTGCCCGTGCCATCTGTTGATGAGCTTGTGGATCAAGTCGCGGATGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCC-GGTGCCTACA-TTCTCACCCTC-TTTGCAACAAAATACCGGGATAGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGTTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAGGAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT-CCACG-ACGACGCAGT-CCATATGACCACAAAGCTAGACCGGAGATATTGCG-CCCTAGT-CGAGGTT-CAGGCATGCGGGTCACT-CGTCACCGAGGAGCAACCGCACGCGATGTTGAT-CCCCAT-GGAGTACTT-CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT-CGCCTGAACTTCTGTCACCGGAGAG-CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG-CATGGGCTAGTCTGAATTCAGATGGTCACT-GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA-GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG-AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA]
[+] EMBL AK100731 [AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGTTGGGAGCGGCTCCAATTTCATCCGATGTGCCCGTGCCATCTGTTGATGAGCTTGTGGATCAAGTCGCGGATGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCC GGTGCCTACA TTCTCACCCTC TTTGCAACAAAATACCGGGATAGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGTTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAGGAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACG ACGACGCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTAGT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAA ]
[+] EMBL CB681192 [ CGCGGCCGTTCTTGATTTCTTCGGATTAGGATCTGTGATGTGTTTGGGTGTCACTGCCGGGTGCCTACATTTCTCACCCTCATTTGCAACAAAATACCGGGATACAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGGCTGTACAATAAGGAATTATTAAACTTGCTTTACTATTATGGGAGTCGGGGGCTAATCAAGGAATGCTTGCTTCACCGGTATTTTATCACGGAAGTTCGTGGGAATGGACAAGACCCTGAATCAGAGATTGTGCAAGCCTGTATAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCATGCGATAAACGACAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCTGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACA ACGACTCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTATT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTT ]
[+] EMBL CA764497 [ CCCTGAATCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGGCGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAGTGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTT CCACG ACGACGCAGT CCATATGACCACAAAGCTAGACCGGAGATATTGCG CCCTAGT CGAGGTT CAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGAAGAANGGGGGGGTCTGGTTGGTCATATGGTTGGAGGCAGAAACACATGTATATCTCATCACATCGGTNCATACGAGAAAAAAGAAGAGAGAAAAT ]
[+] EMBL C99713 [ tcCATTNTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTTCCCACGAACGACGCAGTCCCATATGACCACAAAGCTAGACCGGAGATATTGCGCCCCTAGTCCGAGGTTCCAGGCATGCGGGTCACT CGTCACCGAGGAGCAACCGCACGCGATGTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAGCCATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA]
[+] EMBL AU094682 [ AGATATTGCN CCCTAGTCCGAGGTTNCAGGCATGCGGGTCACTCCGTCACCGAGGAGCANCCGCACGCGATTTTGAT CCCCAT GGAGTACTT CCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATATCCNCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAANCCCATCAAGACTCGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGNCCTGACAATACAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCATACGAG AAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA]
[-] EMBL CB681193 [ CTAGT GGAGGTT CAGGCATGTGGGTCACT AGTCACCGAGGAGCAACCGCATGCGATGTTGAT CCCCAT GGAGTATTT CCTCATGGGATATGGGCTTTACAGTCCTTCCCAGCTGGATAGCAGCCCCCGGAGCACATTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGTTGAAGCCCATCAAGACTAGGATTTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCTTTACAATTCAAGCTCATGAAGGTGGAACACTG CATGGGCTAGTCTGAATTCAGATGGTCACTCACCACCAAGTTTTGGTCCCTCCAGTGATGCAGGTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGTTAATTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGGAGAA GGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCACATCGTTCCTTATGAG AAAAAGA ]
[+] EMBL BI806657 [ GGAGCCA CGCACGCGATTGTGATCCCCCATGGGAG ACTTCCCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGTATAT CGCCTGAACTTCTGTCACCGGAGAG CATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTCGCTCAAAGTNTAGCA TGGCCAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACCCTGCCATGGGCTAGTCTGAATTCAGATGGTCACT GCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAA ]
consensusID : consensus_11676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence
[GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAGCGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCTTTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTNGAATGGTNGTT]
[+] EMBL AU064292 [GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAGCGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCTTTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTNGAATGGTNGTT]
[+] EMBL C91616 [GGAGGAGGAGGAGGAGGAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCCATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGCTCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGATGTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATNACTCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11676#0 AGGAGAGAGAGAGAGAGAGAAGAGGAGAGGTTGGTGGCAGAGGAGGAGGAGGAGGAGGAG 60
consensus_11676#1 --------------------------------------------GGAGGAGGAGGAGGAG 16
****************
consensus_11676#0 GAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCC 120
consensus_11676#1 GAGGAGAAGCTTCTAGAAGGGGAGCGGGGCGGCATGGGGGACTCGAGCCGGTCGGTGTCC 76
************************************************************
consensus_11676#0 ATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGC 180
consensus_11676#1 ATCGACGTGGAGCGGATCTCCTTCGGCGGCAAGGAACACCGAGTGCGAACCAGATATGGC 136
************************************************************
consensus_11676#0 TCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGAT 240
consensus_11676#1 TCTGTATCTGTTTCTGTATTTGGAGATGAAGACAAGCCGGCGCTCATAACATACCCGGAT 196
************************************************************
consensus_11676#0 GTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCG 300
consensus_11676#1 GTAGCTCTAAATTATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCG 256
************************************************************
consensus_11676#0 CTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCA-TGAGTTGGG-AG 358
consensus_11676#1 CTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCAATGAGTTGGGGAG 316
*********************************************** ********* **
consensus_11676#0 CGGCTCCAATTTC---ATCC-------GATGTGCCCGTG-CCATCT-GTT--GATGAGCT 404
consensus_11676#1 CGGCTCCAATTTTTCAATCCCGGAATTGGTTGCCCCGTGGCCATCTTGTTTGAATGAGCT 376
************ **** * * ****** ****** *** *******
consensus_11676#0 T-GTGG-ATCAA-GTCGC--GGATGTTCTT--GATTTCTT-CGGATTAGGATCTGTGATG 456
consensus_11676#1 TTGTGGGATCAAAGTCGGCGGAATGTTCTTTGAATTTCTTTCGGATTAAGGGATCCTGTN 436
* **** ***** **** * ******** ******* ******* * * *
consensus_11676#0 TGTTTGGGTGTCACTGCCGGTGCCTACATTCTCACCCTCTTTGCAACAAAATACCGGGAT 516
consensus_11676#1 -GAATGGTNGTT------------------------------------------------ 447
* *** **
consensus_11676#0 AGAGTGATTGGCCTTATGCTAGTTTCGCCGCTATGCAAAGCCCCTTCTTGGAGCGAGTGG 576
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 TTGTACAATAAGGTATTATTAAACTTGCTTTACTATTATGGGAGTCGTGGGCTAGTCAAG 636
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 GAATGCTTGCTTCAGCGGTATTTTAGCACGGAAGTTCGTGGGAATGGACAAGACCCTGAA 696
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 TCAGAGATTGTGCAAGCCTGTAGAAGTTTACTTCATGAGCGACAGGGATCTAATGTATGG 756
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 CGATTCCTTCAGGCGATAAACGAGAGACATGACCTGACGGAAGCGTTGAAGAAGCTTCAG 816
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 TGTCGGACACTGATTTTTGTGGGAGAGAACTCACAGTTCCACGACGACGCAGTCCATATG 876
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 ACCACAAAGCTAGACCGGAGATATTGCGCCCTAGTCGAGGTTCAGGCATGCGGGTCACTC 936
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 GTCACCGAGGAGCAACCGCACGCGATGTTGATCCCCATGGAGTACTTCCTCATGGGATAT 996
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 GGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTGAACCCATTCTGT 1056
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 ATATCGCCTGAACTTCTGTCACCGGAGAGCATGGGAGTGAAGCTGAAGCCCATCAAGACT 1116
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 CGGATCTCGCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATA 1176
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 CAAGCTCATGAAGGTGGAACACTGCATGGGCTAGTCTGAATTCAGATGGTCACTGCCAGC 1236
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 AAGTTTTGGTACCTCCAGTGATGCAGCTAATGGCAGTTTTTTTTTTCTTTTCATTGTGGT 1296
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 TAACTGATATAATCTGTATCGATGTGTTATTAGGCAGAGGTGGGAGTGAGTTTGTAGGGG 1356
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 AGAAGGGTGGGTCTGTTTGTTCATATGTTTGTAGTCAGAAACACATGTATATCTCATCAC 1416
consensus_11676#1 ------------------------------------------------------------
consensus_11676#0 ATCGTTCCATACGAGAAAAAGAAGAGAGAAAATGATAGAAGCAGAAAAAAAAAAA 1471
consensus_11676#1 -------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||