cluster # 11677

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Oryza sativa
cluster # 11677 cluster # 11677 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11677#0 length = 722 sequences # 7

consensus_11677#1 length = 624 sequences # 2

consensusID : consensus_11677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 722
fasta sequence

                              [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC-TGTGTTGTTGTGGACCGCGGCGAAATT-AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT-ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTGTG]

[+] EMBL CF277562             [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCAT                                                                                      ]
[+] EMBL CF281754             [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACGGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAG                                                                                                                                                                                                                ]
[+] EMBL CF277719             [CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGATATTTTCTGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATAC                                                                                                                                                                                                                    ]
[+] EMBL OSS15617A            [             GAATCTNATGCCCTAGTGCAAGTNTGCAAACTGAAGCCAACCCACACACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGNCACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGTTTGCTTGTG                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK062489             [                                                                                                                          TTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTGTG]
[-] EMBL CF281753             [                                                                                                                                                                    AACTAAAGCCTGCAGCCATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGC TGTGTTGTTGTGGACCGCGGCGAAATT AACTAAGTCGTAGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTT ATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTAaaaaaaaa            ]
[+] EMBL AU101826             [                                                                                                                                                                                                                                                                                                                                                                                                                gcgnatAATTTCAACTAAGTCGTAGTACAAAATGAGACACNCATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTNATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTAAAAAAAAAAa                                ]




>consensus_11677#0
CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACAC
ACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGC
TCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC
CATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGA
TGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAA
GAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTC
CTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAACTAAGTCG
TAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGAT
TTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATT
TTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTA
CCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGA
ATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTG
TG

consensusID : consensus_11677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [ATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA]

[-] EMBL CF277561             [ATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA]
[-] EMBL CF277718             [                                                                                                                                                         TCAAACCGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATCCCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTACCCATGCATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTCCAAAAAAAAAAAAAA]




>consensus_11677#1
ATTTTTCTTTTGAAAGCTGCAGGGTGCTCTTCTTCTTCTCTAGGTTGATCTTATATCATC
TGAGAGCTCCAAACTAAAGCCTGCAGCCATGGATTTGATGGAGAAGTCCAGACGAGCAAA
TTTTTTGTTCGACGACAACGACGGAGATGAGGATCAAAACGCCAAACAAAAAAAGGAGAG
GACTCCTGTTAATCGAGCTGGGGAGAAGAATAACAATGAGAACTTCACAAGTCGTGGACT
ACCAAACGACACTAGTAAGGATCGCTCCTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTG
TGGACCGCGGCGAAATTAATTAAGTCGTGGTACAAAATGAGACACACATCCTAGTTTTAC
GATTCGGGATTTGAGGTATGCTTAGATTTACAGTAGTAGGATATACCATATTATATACTA
AGTTGTTATGTTTTAGGATGTCGGATTTTGAACCAGCTGTGATTTGATCTTATATGTACT
AGTGGCACCGCCAGTTACCGGTGATTACCAATTACTTTCATGTGTGTTAAGTTAACCATG
CATACATGAATGTAGAGACTGGGATGAATATGTTGATTATTATCTTATAAAAGAAATTAG
ATAGTACTACAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11677#0      CGAAACCTCTCATGAATCTGATGCCCTAGTGCAAGTGTGCAAACTGAAGCCAACCCACAC 60
consensus_11677#1      ------------------------------------------------------------
                                                                                   

consensus_11677#0      ACCACACACACATATATATACAGAGTTCCTTCCATTTTTCTTTTGAAAGCTGCAGGGTGC 120
consensus_11677#1      ---------------------------------ATTTTTCTTTTGAAAGCTGCAGGGTGC 27
                                                        ***************************

consensus_11677#0      TCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC 180
consensus_11677#1      TCTTCTTCTTCTCTAGGTTGATCTTATATCATCTGAGAGCTCCAAACTAAAGCCTGCAGC 87
                       ************************************************************

consensus_11677#0      CATGGATCTGATGGAGAAGTCCAGACGAGCAAATTTCTTGTTCGACGACAACGACGGAGA 240
consensus_11677#1      CATGGATTTGATGGAGAAGTCCAGACGAGCAAATTTTTTGTTCGACGACAACGACGGAGA 147
                       ******* **************************** ***********************

consensus_11677#0      TGAGGATCAAAACGACAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAA 300
consensus_11677#1      TGAGGATCAAAACGCCAAACAAAAAAAGGAGAGGACTCCTGTTAATCGAGCTGGGGAGAA 207
                       ************** *********************************************

consensus_11677#0      GAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTC 360
consensus_11677#1      GAATAACAATGAGAACTTCACAAGTCGTGGACTACCAAACGACACTAGTAAGGATCGCTC 267
                       ************************************************************

consensus_11677#0      CTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAACTAAGTCG 420
consensus_11677#1      CTCCGGGTTGCTGGCAAGCTTGCTGTGTTGTTGTGGACCGCGGCGAAATTAATTAAGTCG 327
                       **************************************************** *******

consensus_11677#0      TAGTACAAAATGAGACACACATCCTAGTTCTACGATTCGGGATTTGAGGTATGCTTAGAT 480
consensus_11677#1      TGGTACAAAATGAGACACACATCCTAGTTTTACGATTCGGGATTTGAGGTATGCTTAGAT 387
                       * *************************** ******************************

consensus_11677#0      TTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATT 540
consensus_11677#1      TTACAGTAGTAGGATATACCATATTATATACTAAGTTGTTATGTTTTAGGATGTCGGATT 447
                       ************************************************************

consensus_11677#0      TTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTA 600
consensus_11677#1      TTGAACCAGCTGTGATTTGATCTTATATGTACTAGTGGCACCGCCAGTTACCGGTGATTA 507
                       ************************************************************

consensus_11677#0      CCAATTACTCTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGA 660
consensus_11677#1      CCAATTACTTTCATGTGTGTTAAGTTAACCATGCATACATGAATGTAGAGACTGGGATGA 567
                       ********* **************************************************

consensus_11677#0      ATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACATGTGATTGTGTATGTG 720
consensus_11677#1      ATATGTTGATTATTATCTTATAAAAGAAATTAGATAGTACTACAAAAAAAAAAAAAA--- 624
                       ********************************************    *      *    

consensus_11677#0      TG 722
consensus_11677#1      --