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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1054 fasta sequence
[GCAAGTGAAGCGGCGACATGACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGCGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCAGCGCCGA-GCTCATCCGGCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAA-TTGAC-AGGGCAATCGAACTACC-AAGCAGCCGGGAACGCGC-TGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGG-ACACCGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACTGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATTGTTATCCTATTGCATGATCGTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTAGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAAATAAAGGCAAATATCAATTGCTTTAACTGCTACAGGCACGACGATACTGATCTCACCCCAAAAATTTACACCATGTCACATGGAACGTTTGAACACATGCATGAAGTATTAAATATATACTA]
[+] EMBL AK070067 [GCAAGTGAAGCGGCGACATGACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGCGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCAGCGCCGA GCTCATCCGGCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAA TTGAC AGGGCAATCGAACTACC AAGCAGCCGGGAACGCGC TGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGG ACACCGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACTGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATTGTTATCCTATTGCATGATCGTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTAGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAAATAAAGGCAAATATCAATTGCTTTAACTGCTACAGGCACGACGATACTGATCTCACCCCAAAAATTTACACCATGTCACATGGAACGTTTGAACACATGCATGAAGTATTAAATATATACTA]
[+] EMBL BP185058 [ GGCGACATGACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGCGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCAGCGCCGA GCTCATCCGGCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAA TTGAC AGGGCAATCGAACTACC AAGCAGCCGGGAACGCGC TGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGG ACACCGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACTGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATTGTTATCCTATTGCATGATCGTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTAGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAAAaa ]
[+] EMBL AB016497 [ ACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGCGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCAGCGCCGA GCTCATCCGGCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAA TTGAC AGGGCAATCGAACTACC AAGCAGCCGGGAACGCGC TGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGGAACA CGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACTGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATTGTTATCCTATTGCATGATCGTTCGATCAGTTAGTACTACCAATCAAAACTGGCATGTAGTGATGTAGTATCCCAACATGAATAAAGGTCT ]
[+] EMBL C72797 [ ACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGC GCGGCGTCGCTGCTCGCCGTGGCGGCGANTGGCGCGGCGGCNAGGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCA NGCCGANGCTCATCCGGCGGGA CNCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATAAACAAGGNGACTTCTCCAACCTACTATGGACGTGGCCCAATTCAANTTGACAAGGGCAATCGAACTACCAAAGCAGCCGGGAACGCTCTTGGGGCTGG ]
consensusID : consensus_11679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 928 fasta sequence
[CGACGGCGAGGTTTGTTCAGCTTGCCGCGTGCCGGCGGCGCTGCTCGCCGTGGCGGCATGGCGGCGGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTACCCAACCGCGACAACTCGCAGTGCCCGGCGACGGGCTTCTACACTAGCAGCGCCTTCATCGCCGCCGCCAACTCCTTCCGGCGTTCGGCACGAGCCGGCGGCGCGCCGAGCTCATCCCGCCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAGGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACACCCGTCCGC-GCGGACACCAGCACCGCCGGC-CGC-GTCCCCGGGTACGGC-GTCA-TCACC-AACATCA-TCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGT-CGACCGCATCGGCTA-CTACAAGCGCTA-CTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACTGCTACAACCAGCGAAA-CTTCGCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTA-CCAATAAAAACTGGCATGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAATTGAAGGCAAAAAAAAAAAGCTTTATCTGCTACAAAAAAAAAA]
[+] EMBL OSAF1500 [CGACGGCGAGGTTTGTTCAGCTTGCCGCGTGCCGGCGGCGCTGCTCGCCGTGGCGGCATGGCGGCGGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTACCCAACCGCGACAACTCGCAGTGCCCGGCGACGGGCTTCTACACTAGCAGCGCCTTCATCGCCGCCGCCAACTCCTTCCGGCGTTCGGCACGAGCCGGCGGCGCGCCGAGCTCATCCCGCCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAGGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGGCGTCGTGCCACGACGTCATCCTCGGCCGGTGG ACCCGCCCGG GGGGGGA AACCACCGCCGGC CGC GTCCCCGGGTACGGC GTCA TCACC AACATCA TCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGT CGACCGCATCGGCTA CTACAAGCGCTA CTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACTGCTACAACCAGCGAAA CTT GCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTA CCAAT AAAACTGGCATGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAATTGAAGGCAAAAAA ]
[+] EMBL L40338 [ GCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAGGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGAC GCCGTCGGCGGCGGACACC G CCGCGTAT CGC GTCCCCGGGTACGAC GGCA TCACC AACATCA TCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGT CGACCGCATCGGCTA CTACAAGCGCTA CTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACTGCTACAACCAGCGAAA CTTCGCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTA CCAATAAAAACTGGCATGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATC ]
[+] EMBL BM038035 [ cttTTCAAGACGCCCATCT GTTCTGGATGACGGCCCAGGGGAACAA CCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACACCCGTTCGC GCGGACACCAGCACAGCCGGCACGCAGTCCCCGGGTACGGCAGTCA TCACCAAACATCA TCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGT CGACCGCATCGGCTA CTACAAGCGCTA CTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACTGCTACAACCAGCGAAA CTTCGCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTACCCAATAAAAACTGGCATGTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAATTGAAGGCCAAAAAAAAAA ]
[+] EMBL BM420312 [ CGGCCGGTGGATCGCCGTCGGCGGCGGACACC G CCGCC GC CGC GTCCCCGGGTACGGC GTCAGTCACC ACATCAGTC NCGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTGCGACCGCATCGGCTAGCTACAAGCGCTAGCTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACTGCTACAACCAGCGAAAGCTTCGCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTA CCAATAAAAACTGGCATGTGANGTAGTATCCCGACATGAATAAAGGTCTTTAATC ATTGAAGGCCAAAAAAAAAA ]
[+] EMBL BI796433 [ CGACTGCTACAACCAGCGAAA CTTCGCCAGCTAGTTGATCGTTCGATCGAATTGTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTA CCAATAAAAACTGGCATGTGATGTAGTATCCC ACATGAATAAAGGTCTTTAATCAATTGAAGGCAAATATCAATTGCTTTATCTGCTACAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11679#0 GCAAGTGAAGCGGCGACATGACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCG 60
consensus_11679#1 ---------------------------CGACGGCGAGGTTTGTTCAGCTTGCCGCGTGC- 32
***** **************************
consensus_11679#0 CGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGG 120
consensus_11679#1 ---CGGCGGCGCTGCTCGCCGTGGCGGCATG----GCGGCGG--CAGGGCGTCGGGTCGG 83
***** ******************* * ******* ****************
consensus_11679#0 TCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGG 180
consensus_11679#1 TCATCACGCAGGCGGTGTTCAACAGCATGCTACCCAACCGCGACAACTCGCAGTGCCCGG 143
******************************* ****************************
consensus_11679#0 CGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCG 240
consensus_11679#1 CGACGGGCTTCTACACTAGCAGCGCCTTCATCGCCGCCGCCAACTCCTTCC-GGCGTTCG 202
*** ************ * ***************************** ********
consensus_11679#0 GCACCT-CCGGCGGCAGCGCCGAGCTCATCCGGC-GGGAGCTCGCCGCCTTCTTCGGCCA 298
consensus_11679#1 GCACGAGCCGGCGGC-GCGCCGAGCTCATCCCGCCGGGAGCTCGCCGCCTTCTTCGGCCA 261
**** ******** *************** ** *************************
consensus_11679#0 GACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTA 358
consensus_11679#1 GACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTA 321
************************************************************
consensus_11679#0 CTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAAT 418
consensus_11679#1 CTGCTTCAAGGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAAT 381
********* **************************************************
consensus_11679#0 TCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGT 478
consensus_11679#1 TCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGT 441
************************************************************
consensus_11679#0 GGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTT 538
consensus_11679#1 GGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTT 501
************************************************************
consensus_11679#0 CTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGAC 598
consensus_11679#1 CTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGAC 561
************************************************************
consensus_11679#0 GCC-GTCGGCGGCGGACACCG---CCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCA 654
consensus_11679#1 ACCCGTCCGCG-CGGACACCAGCACCGCCGGCCGCGTCCCCGGGTACGGCGTCATCACCA 620
** *** *** ******** ********************** *************
consensus_11679#0 ACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCA 714
consensus_11679#1 ACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCA 680
************************************************************
consensus_11679#0 TCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACT 774
consensus_11679#1 TCGGCTACTACAAGCGCTACTGCGACATGCTCGGCACAGGCTACGGGAGCAACCTCGACT 740
*********************************** ********** *************
consensus_11679#0 GCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATT 834
consensus_11679#1 GCTACAACCAGCGAAACTTCGCCAGCTAGTT------------GATCGTTCGATCGAATT 788
************* *************** * ***** ** **** ***
consensus_11679#0 GTTATCCTATTGCAT--GATCGTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTA 892
consensus_11679#1 GTTGTCATATTATATATGATCGTTTGATCAGTTAGTACTACCAATAAAAACTGGCATG-- 846
*** ** **** ** ******* *********************************
consensus_11679#0 GTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAAATAAAGGCAAATATCAATTG 952
consensus_11679#1 -TGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAATTGAAGGCAAAAAAAAAAAG 905
*************************************** * ******** * ** *
consensus_11679#0 CTTTAACTGCTACAGGCACGACGATACTGATCTCACCCCAAAAATTTACACCATGTCACA 1012
consensus_11679#1 CTTTATCTGCTACAAAAAAAAAA------------------------------------- 928
***** ******** * *
consensus_11679#0 TGGAACGTTTGAACACATGCATGAAGTATTAAATATATACTA 1054
consensus_11679#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||