Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1168 cluster # 1168       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1168#0 length = 679 sequences # 2  

consensusID : consensus_1168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence
                              [AACCCTAGCCGCTTTCCCCATCTCCTCCTCCCAGAACTAGAATTTCGCCTGGNTCCTCTCCATCGGGGCCTCGCGCGATGATGTCTCTTTGTATTGATAATTATTCGATGAACTTTCGATAATTATTAGATCTAAGAGATGTTGTTCGA-GGGAGCCGTGTGCTGAGATGAAGGCGGCAAGGTAAGAGAACATGTAACAAGCGAGGTGCTTGTGTCTGAGGGTCAAAAGAAAAAGAGACGAAAAAAAAACGAGAGATGTGACATCGCAAGATTGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCACCGTAATAAAGATGATCTTTTTGTGTCCTGGGGGGAGTTCGCACGGGGGGTTATTTTTTTTAGCCCCGGGTTCTCCCCCCAATCTTGTGTCCCGTTGTCCCCTGGTTGTCCTCANATCCCACTGCGACTACATCGTTCAACGATCGCGCGTGAATCTAAACGTGGAGCTACAGCGCAACAACCAANAAATTGTACATTCTCTCNTCNTTTTAANGTGACCTGAANACAAGTTCANCCTGAAGTCCCCCAANAAANGAATATTCTTGCGAATCAAACTTGGTTGAAGTGGCCGTCTGGGATCTTGACATCTGAANCTTGACATCTGAANCAANATGATAATGTTTTGCTGTTGATCNCCTGTGCCCCATN]

[+] EMBL C25957               [AACCCTAGCCGCTTTCCCCATCTCCTCCTCCCAGAACTAGAATTTCGCCTGGNTCCTCTCCATCGGGGCCTCGCGCGATGATGTCTCTTTGTATTGATAATTATTCGATGAACTTTCGATAATTATTAGATCTAAGAGATGTTGTTCGA GGGAGCCGTGTGCTGAGATGAAGGCGGCAAGGTAAGAGAACATGTAACAAGCGAGGTGCTTGTGTCTGAGGGTCAAAAGAAAAAGAGACGAAAAAAAAACGAGAGATGTGACATCGCAAGATTGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCACCGTAATAAAGATGATCTTTTTGTGTCCTGGGGGGAGTTCGCACGGGGGGTTATTTTTTTTAGC                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AA752758             [                                                                                                                                          attcggcaCGAGGGGAGCCGTGTGCTGAGATGAANGCGGCAAGGTAAGANAACATGTAACAAGCGAGGTGCTTGTGTCTGAGGGTCCAAAGAAAAAGAGACGAAAAAAAAACGAGAGATGTGACATCGCAAGATTGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCACCGTAATAAANATGATCTTTTTGTGTCCTGGGGGGAGTTCGCAC GGGGGTTATTTTGTTTAGCCCCGGGTTCTCCCCCCAATCTTGTGTCCCGTTGTCCCCTGGTTGTCCTCANATCCCACTGCGACTACATCGTTCAACGATCGCGCGTGAATCTAAACGTGGAGCTACAGCGCAACAACCAANAAATTGTACATTCTCTCNTCNTTTTAANGTGACCTGAANACAAGTTCANCCTGAAGTCCCCCAANAAANGAATATTCTTGCGAATCAAACTTGGTTGAAGTGGCCGTCTGGGATCTTGACATCTGAANCTTGACATCTGAANCAANATGATAATGTTTTGCTGTTGATCNCCTGTGCCCCATN]


>consensus_1168#0 AACCCTAGCCGCTTTCCCCATCTCCTCCTCCCAGAACTAGAATTTCGCCTGGNTCCTCTC CATCGGGGCCTCGCGCGATGATGTCTCTTTGTATTGATAATTATTCGATGAACTTTCGAT AATTATTAGATCTAAGAGATGTTGTTCGAGGGAGCCGTGTGCTGAGATGAAGGCGGCAAG GTAAGAGAACATGTAACAAGCGAGGTGCTTGTGTCTGAGGGTCAAAAGAAAAAGAGACGA AAAAAAAACGAGAGATGTGACATCGCAAGATTGGCCTTTGCCATGTTGGGTGCGCTCGCA TGGCAGGCCACCGTAATAAAGATGATCTTTTTGTGTCCTGGGGGGAGTTCGCACGGGGGG TTATTTTTTTTAGCCCCGGGTTCTCCCCCCAATCTTGTGTCCCGTTGTCCCCTGGTTGTC CTCANATCCCACTGCGACTACATCGTTCAACGATCGCGCGTGAATCTAAACGTGGAGCTA CAGCGCAACAACCAANAAATTGTACATTCTCTCNTCNTTTTAANGTGACCTGAANACAAG TTCANCCTGAAGTCCCCCAANAAANGAATATTCTTGCGAATCAAACTTGGTTGAAGTGGC CGTCTGGGATCTTGACATCTGAANCTTGACATCTGAANCAANATGATAATGTTTTGCTGT TGATCNCCTGTGCCCCATN



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)