These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 738 fasta sequence [ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG-CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT-CA-GGGTGA-CGA-GGAGGCA-GCTCCAGGAGCTGCTGGA-GAA-GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG-CT-GGCAGAGATGATCAGCTCCGG-CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT-GGCGGCCGTCGCTGCAAAGCA-TACCGG-AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAATCTGTCCCTGAACTTTGTACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACTTCACAGCTAGTAATGAAA] [+] EMBL AK062811 [ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATATAGCTCTGTCCCTGAACTTTGTACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACTTCACAGCTAGTAATGAAA] [+] EMBL AU164862 [ CCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGGACTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGGNCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCATTACCGGNAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAA ] [+] EMBL AU101558 [ CCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGGACTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CTGGGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGGCGGCCGTCGCTGCAAAGCATTACCGG ANGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTG ] [+] EMBL AU184024 [ GTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGCTCTGCGG CTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAATTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATGAGGAGG AGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGAT CA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGAC ] [+] EMBL AU101559 [ GAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCCA GGGTGA CGA GGAGGCA GCTCCAGGAGCTGCTGGA GAA GGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTG CT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAA ] [+] EMBL BI806943 [ AGAT CATGGGTGATCGATGGAGGCATGCTCCAGGAGCTGCTGGATGAATGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGTCT GGCAGAGATGATCAGCTCCGG CAAGGTTTGCTACGAGCAGGAGGCAGCGGGCT GGCGGCCGTCGCTGCAAAGCA TACCGG AGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTAaaaa ] consensusID : consensus_11682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATNAGGAGGAGCAGCAGCATCTACATNAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGGAGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCANANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184025 [CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACGACGGCGAGTGGGAGGATNAGGAGGAGCAGCAGCATCTACATNAGATGGCGGCGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGGAGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCANANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11682#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 354 fasta sequence [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTT] [+] EMBL BE230003 [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGCTGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATAGGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAGATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAGAGATTGCTGGAACTTTTTTTACTT] [+] EMBL BE230413 [CGTGCCGAATTCGGCACGAGCAGCTCCAGGAGCTGCTGGAGAATGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAGAGATGATCAGCTCCGGCAAGGTTTGCTACAAGCAGGAGGCGGCGGGCTGGCGGACGTCGCTGCAAGACATGCCGGAGGCCGACGAGTCATAGATTATTCAGCGGATCTTTTGATTCCATACGACTGTTTTATGTTCCTTGATTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11682#0 ATTAAACCAACCCGAGCACCGTCAAGCAACTCTAGCGAAGGGCCTAGTACAAAGCAAAGC 60 consensus_11682#1 ------------------------------------------------------------ consensus_11682#2 ------------------------------------------------------------ consensus_11682#0 TCTGCGGCTTCAGATTCTGAGATACACGCATCGATCATCTCGCATCTCTTCAGTTCTGAA 120 consensus_11682#1 ------------------------------------------------------------ consensus_11682#2 ------------------------------------------------------------ consensus_11682#0 TTTCTGCGTGTATGGGGAACTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACG 180 consensus_11682#1 -------------------CTGCTTCAAGTCGCAGCGCGCCGCCGCATCGTGGGCCGACG 41 consensus_11682#2 ------------------------------------------------------------ consensus_11682#0 ACGGCGAGTGGGAGGATGAGGAGGAGCAGCAGCAGCAGCAGCATCTACATGAGATGGCGG 240 consensus_11682#1 ACGGCGAGTGGGAGGATNAGGAGGAGCAG---------CAGCATCTACATNAGATGGCGG 92 consensus_11682#2 ------------------------------------------------------------ consensus_11682#0 CGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGG 300 consensus_11682#1 CGGTCGAGAAGATGGAGCGGGTGGAGGTGAAGATCAGGGTGACGAGGAGGCAGCTCCAGG 152 consensus_11682#2 ------------------------------CGTGCCGAATTCGGCACGAGCAGCTCCAGG 30 * * * * * *********** consensus_11682#0 AGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAG 360 consensus_11682#1 AGCTGCTGGAGAAGGCCGCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAN 212 consensus_11682#2 AGCTGCTGGAGAAGGCCCCCGGCGAGGGCAAGGGGCGGCCGGTCGAGAAGGTGCTGGCAG 90 ***************** ***************************************** consensus_11682#0 AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGC 420 consensus_11682#1 ANATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCAGCGGGCTGGCGGCCGTCGC 272 consensus_11682#2 AGATGATCAGCTCCGGCAAGGTTTGCTACGAGCAGGAGGCGGCGGGCTGGCGGCCGTCGC 150 * ************************************** ******************* consensus_11682#0 TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 480 consensus_11682#1 TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 332 consensus_11682#2 TGCAAAGCATACCGGAGGCCGACGAGTCATAGATTATTCAGTGGATCTTTTGATTCCATA 210 ************************************************************ consensus_11682#0 GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 540 consensus_11682#1 GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 392 consensus_11682#2 GGACTGTTTTATGTTCCTTGATTGATTCTCCACATGTGTATAGTTGCTCTAGCTAGGAAG 270 ************************************************************ consensus_11682#0 ATATTGTAGTTTGATCGTCATTCTTTCGGAGATGTACAGGCTACGAGACTGATTGAGAGA 600 consensus_11682#1 ATATTGTAGTTTGATCGTCNTTCCAAAAAAAAAAAAAAAAAAA----------------- 435 consensus_11682#2 ATATTGTAGTTTGATCGTCATTCTTTCTGGAGATGTACAGGCTACTAGACTGATTGAGAG 330 ******************* *** consensus_11682#0 GATTGCTGGAACTTTTTTTACTTGAGCAGATTTCTGATAAAAATCTGTCCCTGAACTTTG 660 consensus_11682#1 ------------------------------------------------------------ consensus_11682#2 AGATTGCTGGAACTTTTTTTACTT------------------------------------ 354 consensus_11682#0 TACTCATATGGCCTCAGATGTCTCGATGATCACTGATGAACTGCAGAGAGACGATGAACT 720 consensus_11682#1 ------------------------------------------------------------ consensus_11682#2 ------------------------------------------------------------ consensus_11682#0 TCACAGCTAGTAATGAAA 738 consensus_11682#1 ------------------ consensus_11682#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||