cluster # 11695

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Oryza sativa
cluster # 11695 cluster # 11695 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11695#0 length = 1825 sequences # 5
consensus_11695#1 length = 825 sequences # 2

consensus_11695#2 length = 627 sequences # 1
consensus_11695#3 length = 534 sequences # 1

consensusID : consensus_11695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1825
fasta sequence

                              [GCTGCTGCATCTCTTGGGCAGGTTTATCAGGCCAGGCTTCGTTCCAACAGGAAGGTTGTTGCTGTCAAAGTACAAAGACCTGGAGTTCAAGCAGCAATTTCCTTGGATATCTACATCTTGAGATTCCTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTACTAGATGAATGGGCATCAAGTTTATTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCTAACTGAGTCGCTTCGAGCAAGAACAGAGCAGTCCCTGACCAGGGATCAACAAGAGGAAACTGATAGTTCCAAATTTGCAATTAAACAAGTCTTGTCATTTACTCTTACTGAACAGGGTGCCTTCGTGAAGGATTTACTTCTTCAGGAGATTGCTAAGGGATTAGATGCACTTGGAGCTGCTACATTGAGTTCTGCAACATCTGCTGCAGCCTCCAGATTGCCGTTTGCTGTTCCATCCCCATCACCCTCACTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGCCTTCTCCTACTTTTGTCCA-AGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATATATTTTTAAAAA-GGAA-TGTGGTCTTATAAAGCCTTTTCT]

[+] EMBL AK070519             [GCTGCTGCATCTCTTGGGCAGGTTTATCAGGCCAGGCTTCGTTCCAACAGGAAGGTTGTTGCTGTCAAAGTACAAAGACCTGGAGTTCAAGCAGCAATTTCCTTGGATATCTACATCTTGAGATTCCTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTACTAGATGAATGGGCATCAAGTTTATTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCTAACTGAGTCGCTTCGAGCAAGAACAGAGCAGTCCCTGACCAGGGATCAACAAGAGGAAACTGATAGTTCCAAATTTGCAATTAAACAAGTCTTGTCATTTACTCTTACTGAACAGGGTGCCTTCGTGAAGGATTTACTTCTTCAGGAGATTGCTAAGGGATTAGATGCACTTGGAGCTGCTACATTGAGTTCTGCAACATCTGCTGCAGCCTCCAGATTGCCGTTTGCTGTTCCATCCCCATCACCCTCACTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGCCTTCTCCTACTTTTGTCCA AGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTAC                                            ]
[-] EMBL CB662718             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGCAATTAAACAAGTCTTGTCATTTACTCTTACTGAACAGGGTGCCTTCGTGAAGGATTTACTTCTTCAGGAGATTGCTAAGGGATTAGATGCACTTGGAGCTGCTACATTGAGTTCTGCAACATCTGCTGCAGCCTCCAGATTGCCGTTTGCTGTTCCATCCCCATCACCCTCACTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGCCTTCTCCTACTTTTGTCCA AGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATATATTTTTAAAAAGGGAAGTGTGGTCTTATAAAaaaaaag  ]
[+] EMBL BI812285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCTGTTCCATCCCCATCACCCTCAGTAGACAATGAGGAGCCCACTAACTTGAGAAATGTACATCGCCTTCTCCTACTTTTGTCCAGAGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCC ATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCC AATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATATATTTTTAAAAAaa                           ]
[-] EMBL CB636072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCACCCTCANTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGCCTTCTCCTACTTTTGTCCA AGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTTTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATA ATTTTTAAAAA GGAA TGTGGTCTTATAAAGCCTTTTCT]
[-] EMBL CB636070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCCTCANTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGCCTTCTCCTACTTTTGTCCA AGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCTGAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATA ATTTTTAAAAA GGAA TGTGGTCTTATAAAGCCTTTTCT]




>consensus_11695#0
GCTGCTGCATCTCTTGGGCAGGTTTATCAGGCCAGGCTTCGTTCCAACAGGAAGGTTGTT
GCTGTCAAAGTACAAAGACCTGGAGTTCAAGCAGCAATTTCCTTGGATATCTACATCTTG
AGATTCCTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTA
CTAGATGAATGGGCATCAAGTTTATTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGT
GGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTAT
CTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCA
GAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTG
GAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGG
AAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGAACTTCGTGATGGA
TTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTT
GTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACA
GGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCA
GGGAATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTT
GTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAA
GTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAG
CTCCGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTG
GAGTCTTTGCTAACTGAGTCGCTTCGAGCAAGAACAGAGCAGTCCCTGACCAGGGATCAA
CAAGAGGAAACTGATAGTTCCAAATTTGCAATTAAACAAGTCTTGTCATTTACTCTTACT
GAACAGGGTGCCTTCGTGAAGGATTTACTTCTTCAGGAGATTGCTAAGGGATTAGATGCA
CTTGGAGCTGCTACATTGAGTTCTGCAACATCTGCTGCAGCCTCCAGATTGCCGTTTGCT
GTTCCATCCCCATCACCCTCACTAGACAATGAGGATGCCACTAACTTGAGAAATTTACAT
CGCCTTCTCCTACTTTTGTCCAAGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGA
TACAATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATAT
GAAATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCA
GAGTCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGC
GCTGTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATT
TCCAATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTT
CATAGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTC
TTATTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAAT
TCTTCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATATATTTTTAAAAAGG
AATGTGGTCTTATAAAGCCTTTTCT

consensusID : consensus_11695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 825
fasta sequence

                              [ATTTAATGCAGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGTGAAATCTGCACTCTCATTCACTCGTTAGCAACTTGAACAGCGCATAGGCAACCCTAGTTACTGGCTTATACTGTGGTCTTTTAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACANNNNCTTNNNGATGGATTTATTNNNNNNTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCNNAGCTCCGATCAACTTTGCNNNCGCTTCTTTANNNNNTCTNNNNNTCTCTA]

[+] EMBL CF196728             [ATTTAATGCAGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGTGAAATCTGCACTCTCATTCACTCGTTAGCAACTTGAACAGCGCATAGGCAACCCTAGTTACTGGCTTATACTGTGGTCTTTTAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACANNNNCTTNNNGATGGATTTATTNNNNNNTG                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF196585             [                                                                                                                                                                                                                                                               AGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCNNAGCTCCGATCAACTTTGCNNNCGCTTCTTTANNNNNTCTNNNNNTCTCTA]




>consensus_11695#1
ATTTAATGCAGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAAT
TATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGAC
GAGTCCTTATCATGGAATGGGTTGAGGTGAAATCTGCACTCTCATTCACTCGTTAGCAAC
TTGAACAGCGCATAGGCAACCCTAGTTACTGGCTTATACTGTGGTCTTTTAGGGGGAAAA
ACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCA
GCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGT
TGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACANNNNCTTNN
NGATGGATTTATTNNNNNNTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAA
AGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGC
ATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGA
TCTGTCAGGGAATCTTGGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTA
ATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTC
TTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCNNAGCTC
CGATCAACTTTGCNNNCGCTTCTTTANNNNNTCTNNNNNTCTCTA

consensusID : consensus_11695#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [AGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTNTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCCTACTGAGTCGCTTCGACAAGAACAGAGCAGTCCTGACCAGGATCACCAGAAGAAACGATAGTCCAATTGCAATAAACAGTCTGTATTACCTACTGACAGTGCTCGTANGATACTCTCAGAATGCAGGATCATCCTGACGCTCTGATGCACTGCCCCCCGATCCTGCTC]

[+] EMBL CA753089             [AGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTNTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCCTACTGAGTCGCTTCGACAAGAACAGAGCAGTCCTGACCAGGATCACCAGAAGAAACGATAGTCCAATTGCAATAAACAGTCTGTATTACCTACTGACAGTGCTCGTANGATACTCTCAGAATGCAGGATCATCCTGACGCTCTGATGCACTGCCCCCCGATCCTGCTC]




>consensus_11695#2
AGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCG
TGATTTTGATGGTNTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTCCAACTGCTCA
GAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTGACAGAGGGGT
GCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATGTATAAATTCAA
GTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTCTTGGAAGGCAT
TGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAG
AAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAA
GGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCCTACTGAGTCGCTTCGACAAGA
ACAGAGCAGTCCTGACCAGGATCACCAGAAGAAACGATAGTCCAATTGCAATAAACAGTC
TGTATTACCTACTGACAGTGCTCGTANGATACTCTCAGAATGCAGGATCATCCTGACGCT
CTGATGCACTGCCCCCCGATCCTGCTC

consensusID : consensus_11695#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [GTTCAAGCAGCAATTTCCTTGGATATCTACATCTTGAGATTCCTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTACTAGATGAATGGGCATCAAGTTTATTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGNACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTNNNNNNNNNNNNTTGTTACTCTNNNNNNNCTNN]

[+] EMBL CF196215             [GTTCAAGCAGCAATTTCCTTGGATATCTACATCTTGAGATTCCTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTACTAGATGAATGGGCATCAAGTTTATTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATATGGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTCCTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTGAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGAATGATGGGAGAATTCCGACAAGNACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTNNNNNNNNNNNNTTGTTACTCTNNNNNNNCTNN]




>consensus_11695#3
GTTCAAGCAGCAATTTCCTTGGATATCTACATCTTGAGATTCCTTGCTGGTGTCGCTAGG
AAGGCTGGCAAGCTGAACACAGATCTTCAGGCTGTACTAGATGAATGGGCATCAAGTTTA
TTTAGGGAGATGGATTACAGAGCAGAAGCAAGAAGTGGGCTTAAATTCAGGGAATTATAT
GGGAAATTTAGAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAGAAGACGAGTC
CTTATCATGGAATGGGTTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTT
GAGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGAT
CCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGATTTCGGA
ATGATGGGAGAATTCCGACAAGNACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTT
GTTAACCGTGATTTTGATGGTNNNNNNNNNNNNTTGTTACTCTNNNNNNNCTNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11695#0      GCTGCTGCATCTCTTGGGCAGGTTTATCAGGCCAGGCTTCGTTCCAACAGGAAGGTTGTT 60
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      GCTGTCAAAGTACAAAGACCTGGAGTTCAAGCAGCAATTTCCTTGGA---TATCTACATC 117
consensus_11695#3      ------------------------GTTCAAGCAGCAATTTCCTTGGA---TATCTACATC 33
consensus_11695#1      ---------------------------------------------------ATTTAATGC 9
consensus_11695#2      ----------AGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACC 50
                                                                           * *    *

consensus_11695#0      TTGAGATTC-----CTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTC 172
consensus_11695#3      TTGAGATTC-----CTTGCTGGTGTCGCTAGGAAGGCTGGCAAGCTGAACACAGATCTTC 88
consensus_11695#1      AGGAGATGG-----ATTACAG--------AGCAGAAGCAAGAAGTGGGCTTAAATTCAGG 56
consensus_11695#2      TTGTTAACCGTGATTTTGATGGTNTAGCAAAAGATTTTGTTACTCTCGGTTTACTTCCTC 110
                         *  *         **   *        *           *          *  **   

consensus_11695#0      AGGCTGTACT---AGATGAATGGGCAT---------CAAGTTTATTTAGGGAGATGGATT 220
consensus_11695#3      AGGCTGTACT---AGATGAATGGGCAT---------CAAGTTTATTTAGGGAGATGGATT 136
consensus_11695#1      GAATTATATG---GGAAATTTAGAGAT---------GTA--CTAGTTCCAGAAATGTATC 102
consensus_11695#2      CAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGTGTATTTCAAAATGCTGTTG 170
                           *         **      *  *                ** **    *      * 

consensus_11695#0      ACAGAGCAGAAGCAAGAAGTGGGCTT---AAAT---TCAGGGAATTATATGGGAAATTTA 274
consensus_11695#3      ACAGAGCAGAAGCAAGAAGTGGGCTT---AAAT---TCAGGGAATTATATGGGAAATTTA 190
consensus_11695#1      TGGAACAAACAAGAAGACGAGTCCTT---ATCA---TGGAATGGGTTGAGGTGAAATCTG 156
consensus_11695#2      ACAGAG-GGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGGAATCTTGGTCGAACTATG 229
                           *        ** *      ***   *      *               *** * * 

consensus_11695#0      GAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAG-AAGACGAGTCCTTA---TC 330
consensus_11695#3      GAGATGTACTAGTTCCAGAAATGTATCTGGAACAAACAAG-AAGACGAGTCCTTA---TC 246
consensus_11695#1      CACTCTCATTCACTCGTTAGCAACTTGAACAGCGCATAGGCAACCCTAGTTACTG---GC 213
consensus_11695#2      TATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCCTTGCTGTC 289
                        *           **   *             *      * **  * *     *     *

consensus_11695#0      ATGGAATGGG-----TTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTG 385
consensus_11695#3      ATGGAATGGG-----TTGAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTG 301
consensus_11695#1      TTATACTGTGGT-CTTTTAGGGGGAAAAACTGTCAGAAGTCAGAGACCAATATTTGGTTG 272
consensus_11695#2      TTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTTCATACCCA 349
                        *  *  *        * **    **   *    * **      *  ** *   *     

consensus_11695#0      AGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGAT- 444
consensus_11695#3      AGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGAT- 360
consensus_11695#1      AGGTCGGAGTATACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGAT- 331
consensus_11695#2      TGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACG 409
                        **   *     *  * ** *     *****     **  *    *  **  ******  

consensus_11695#0      CCACATCCTGGAAAT----CTTTTGCGTACAGTTGATGGGAAGCTA-GCGTATTTAG--A 497
consensus_11695#3      CCACATCCTGGAAAT----CTTTTGCGTACAGTTGATGGGAAGCTA-GCGTATTTAG--A 413
consensus_11695#1      CCACATCCTGGAAAT----CTTTTGCGTACAGTTGATGGGAAGCTA-GCGTATTTAG--A 384
consensus_11695#2      CTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAGTCTTTGCCTACTGAGTCG 469
                       *  * *  *    **    ****   *       * * ***  **  ** ** * **   

consensus_11695#0      TTTCGGAATGATGGGAG-AATTCCGACAAGAACTTC--------GTGATGGATTTATTGA 548
consensus_11695#3      TTTCGGAATGATGGGAG-AATTCCGACAAGNACTTC--------GTGATGGATTTATTGA 464
consensus_11695#1      TTTCGGAATGATGGGAG-AATTCCGACANNNNCTTN--------NNGATGGATTTATTNN 435
consensus_11695#2      CTTCGACAAGAACAGAGCAGTCCTGACCAGGATCACCAGAAGAAACGATAGTCCAATTGC 529
                        ****  * **   *** * * * ***                   *** *    ***  

consensus_11695#0      AGC---CTGTCTTCAC--CTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTT 603
consensus_11695#3      AGC---CTGTCTTCAC--CTTGTTAACCGTGATTTTGATGGTNNNNNNNNNNNNTT-GTT 518
consensus_11695#1      NNN---NTGTCTTCAC--CTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTT 490
consensus_11695#2      AATAAACAGTCTGTATTACCTACTGACAGTGCTCGT-ANGATACTCTCAGAATGCAGGAT 588
                               ****  *   * *  * ** *** *  * * * *               * *

consensus_11695#0      ACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGT 663
consensus_11695#3      ACTCTNNNNNNNCTNN-------------------------------------------- 534
consensus_11695#1      ACTCTCGGTTTACTTCCTCCAACTGCTCAGAAAGATGAAGTGACAAAAGCATTGACAGGT 550
consensus_11695#2      CATCCTGACGCTCTGATGCACTGCCCCCCGATCCTGCTC--------------------- 627
                         **        **                                              

consensus_11695#0      GTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGG 723
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      GTATTTCAAAATGCTGTTGACAGAGGGGTGCAAAATATAAGCTTTGGAGATCTGTCAGGG 610
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      AATCTTGGTCGAACTATGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTA 783
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      AATCTTGGTATAAATTCAAGTTCCAGATACCTTCTTACTTCTCTCTTGTAATTCGAAGCC 670
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      ATTCGAAGCCTTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTC 843
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      TTGCTGTCTTGGAAGGCATTGCAATCAGCTTCAATCCCAACTACAAAGTCTTGGGCAGTT 730
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      TTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTC 903
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      CATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCNNAGCTCCGATCAACTT 790
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      CGATCAACTTTGCAGACGCTTCTTTATAAGGATGGCACTTTCCAGATTGACCGTTTGGAG 963
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      TGCNNNCGCTTCTTTANNNNNTCTNNNNNTCTCTA------------------------- 825
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      TCTTTGCTAACTGAGTCGCTTCGAGCAAGAACAGAGCAGTCCCTGACCAGGGATCAACAA 1023
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      GAGGAAACTGATAGTTCCAAATTTGCAATTAAACAAGTCTTGTCATTTACTCTTACTGAA 1083
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      CAGGGTGCCTTCGTGAAGGATTTACTTCTTCAGGAGATTGCTAAGGGATTAGATGCACTT 1143
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      GGAGCTGCTACATTGAGTTCTGCAACATCTGCTGCAGCCTCCAGATTGCCGTTTGCTGTT 1203
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      CCATCCCCATCACCCTCACTAGACAATGAGGATGCCACTAACTTGAGAAATTTACATCGC 1263
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      CTTCTCCTACTTTTGTCCAAGGTCCCTCAGAAGGAGGATTCATCTCCAATTCCAGGATAC 1323
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      AATAGCACTGAGGAGAACGAAGGTGATAGTACAGATGAGATTTCTCTTGTGTTATATGAA 1383
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      ATGAGATCTCTACCAGAGTTGTTGCCAGTACTTTCTGTCATTCCTGAGCTTCCACCAGAG 1443
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      TCCCAACAGCAGTTTCTCCTCCTGCCAGCAGATTTAACTAATCGTCTTCTGTCTCGCGCT 1503
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      GTTGCAAGAACCATCAGAAGAATATTCATATGAAGATAGAGCATAAAGGTACACATTTCC 1563
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      AATCTCTGCTACATGAAATATTTTTATTTAATTTTTTTTGAGAAAGCGCTAAATGTTCAT 1623
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      AGAAATTTTCCCCCAAATAGTACCACTGCCTTCTAAGCTAGAAATCCAGGATCCGTCTTA 1683
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      TTATTCACCATGACTAATTTTGAGTTGTAGTTAGTTCAAAAAAAAATGAATTGTAATTCT 1743
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      TCATGTGACAATACAGTTCTTTTCGGGAATCATGTATTACATATATTTTTAAAAAGGAAT 1803
consensus_11695#3      ------------------------------------------------------------
consensus_11695#1      ------------------------------------------------------------
consensus_11695#2      ------------------------------------------------------------
                                                                                   

consensus_11695#0      GTGGTCTTATAAAGCCTTTTCT 1825
consensus_11695#3      ----------------------
consensus_11695#1      ----------------------
consensus_11695#2      ----------------------