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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 832 fasta sequence
[TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATATCATATGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG-AAG-AAAAAAATAC-------AAAAAAAAAAGCTCTCGCTATGGTCTGAAA-ATGAAAA--ATG-CAG-CAAAAGAGA-TTTGT-CACCAAATTC-GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG-TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA-GCAGCGG-TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT]
[+] EMBL CF325599 [TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATATCATATGCTGCAGTTGAGCTACAACAAATTTGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAGAAAAAAAATAC AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATATGCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCG ]
[-] EMBL BI804453 [ ttttttttTGGTGGAGTTGAGCTAAAAAAAAATCGGATTTTATGACTGAGGTAGCAGTGG GACTGTGATACATAATGAAAAGGGG AG AAAAAAATACCAAAAAAAAAAAAAAAAGCTCTCGCTATGGTCTGAAACATGCAAACCATGCCAGCCAAAAGAGATTTTGTCCACCAAATTCGGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGGTTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGGATCCCGAATCTG CCGGGCTTCTCGTCGCTTATGCCAAGCAGATACTGGAACCTTGACAGCTTTTCAGGCg ]
[+] EMBL CB634048 [ CAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATAC AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ]
[+] EMBL CB666942 [ CAAAATCCGATTTTATGACTGAGGGAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAAA AAAAAAATAC AAAAAAAAAAGCTCTCCCTATGGGCTGAAA ATGAAAA ATG CCG CAAAAAAAA TTTGT CACCAAATTC GGGGCCAATTTCTGTCTATACAAACAGTTAACCCCCGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAACTACAATA ACAGCGG GTGGCGCCACAGCACCAAGTATGGGAGGGCCTCAACTCTGCTGGCTACCTAACAAAAAAAAACCTTCACATCTCCCTCCCTAAAATACCAATTCATCCCCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGGCCGGCCTTCTCGTCGCTTATGCCAAGCAAATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAAATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCCAAACAGGCACAGCCCCGTCCCATGCAAACAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAACAAAACAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTA ]
[+] EMBL CB634186 [ TCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATACA AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAAAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ]
[+] EMBL CB632925 [ TCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGG AAG AAAAAAATACA AAAAAAAAAAGCTCTCGCTATGGTCTGAAA ATGAAAA ATG CAG CAAAAGAGA TTTGT CACCAAATTC GGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCG TTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATA GCAGCGG TTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTCTCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATC ]
[-] EMBL CB666941 [ GCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTCTTCATGTAAATGCCGTACAGATCATCCAGCTCTCNTGATGTAGGCCATGATAGGGGCTTCGAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCTTTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTCGCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATCTTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT]
consensusID : consensus_11700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[TTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACACAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCACCCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCCAGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGACAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTACCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNCGTAGAAAGATACNCGANATTACATTCCGTACACCTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGCCGTGCCGAGTTGGCGGGGCAAATCCGCG]
[-] EMBL BQ908655 [TTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACACAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCACCCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCCAGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGACAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTACCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNCGTAGAAAGATACNCGANATTACATTCCGTACACCTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGCCGTGCCGAGTTGGCGGGGCAAATCCGCG]
consensusID : consensus_11700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[TTTTTTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAGAAAAAAAATACAAAAAAAAAAAGCTCTCGCTATGGTCTGAAAATGAAAAATGCAGCAAAAGAGATTTGTCACCAAATTCGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATAGCAGCGGTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGGATAGTGT]
[-] EMBL AU101656 [TTTTTTTTTTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGACTGTGATACATAATGAAAAGGGGAAGAAAAAAAATACAAAAAAAAAAAGCTCTCGCTATGGTCTGAAAATGAAAAATGCAGCAAAAGAGATTTGTCACCAAATTCGGTGCCAATTTCTGTCTATACAAACAGTTAACGCACGTCAGGATTATGCGTTGCTTCTCAAAACCATATGCCAGCGCCTAGCTACAATAGCAGCGGTTGGCGCCACAGCACCAAGTATGGTAGGTCCTCAACTCTGCTGGCTACCTAACAAAAAAAGACCTTCACATCTCCCTCCCTAGGAATACCAATTCATCCTCCTCTTCAGTTGCAACGGGATAGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11700#0 TAGTCTCGATTTTTTTTTTTTTTTTTTTTGGCTACAATGACCCATACAAAGGGACACATA 60
consensus_11700#2 ----------------------------------------------------TTTTTTTT 8
consensus_11700#1 --------------------------------------------------------TTTT 4
*
consensus_11700#0 TCATATGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 120
consensus_11700#2 TTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 68
consensus_11700#1 TTTTTTGCTGCAGTTGAGCTACAACAAAATCGGATTTTATGACTGAGGTAGCAGTGGCGA 64
* * *******************************************************
consensus_11700#0 CTGTGATACATAATGAA-----AAGGGGAAGAAAAAAA-----TACAAAAAAAA------ 164
consensus_11700#2 CTGTGATACATAATGAA-----AAGGGGAAGAAAAAAAA----TACAAAAAAAA------ 113
consensus_11700#1 CTGTGATACATAATGCACACACAGGGGCAAGCACAACACACAATACCACAACAACACACA 124
*************** * * *** *** * ** * *** * ** **
consensus_11700#0 -AA-GCTCTCGCTATGGTCTGAAA-ATGAAAAATG---CAGC-AAAAGAG-ATTTGTCAC 216
consensus_11700#2 -AAAGCTCTCGCTATGGTCTGAAA-ATGAAAAATG---CAGC-AAAAGAG-ATTTGTCAC 166
consensus_11700#1 CAAAGCTCTCGCTATGGTCTGAAACATGAAACAAGTGCCAGCCAAAAGAGCATTGGTCAC 184
** ******************** ****** * * **** ******* *** *****
consensus_11700#0 CAAA---TTCGGTGCCAAT-TTCT---GTCTA--TACAA-ACAGTT-AACG--CACGTC- 262
consensus_11700#2 CAAA---TTCGGTGCCAAT-TTCT---GTCTA--TACAA-ACAGTT-AACG--CACGTC- 212
consensus_11700#1 CCAACATTCGGGTGCCCANATTCTCTAGTCTCATCACAACACAGTTCAACGGCCACGTCC 244
* ** * ****** * **** **** **** ****** **** ******
consensus_11700#0 AGGATTATGCGTTGCT---TCTCAA-AACCATA---TGCCAGCGCCTAGCTACAA-TAG- 313
consensus_11700#2 AGGATTATGCGTTGCT---TCTCAA-AACCATA---TGCCAGCGCCTAGCTACAA-TAG- 263
consensus_11700#1 AGGATTATGCGGTGGCCTATCTCAAGAACCATAGTGTCCAGGCGCCTAGCTACAAATAGA 304
*********** ** ****** ******* * * ************** ***
consensus_11700#0 CAGCGGT-TGGCGCCACAG-CACCAAGT--ATGGTAGGTCCTCAACTC-TGC--TGGCTA 366
consensus_11700#2 CAGCGGT-TGGCGCCACAG-CACCAAGT--ATGGTAGGTCCTCAACTC-TGC--TGGCTA 316
consensus_11700#1 CAGCGGTGTGGCGCCACAGACACCAAGATAGTGGTAGGTCCTCAACTCGTGNCGTGGCTA 364
******* *********** ******* ***************** ** ******
consensus_11700#0 CCTAACAA-AAAAAGACC--TTCACA-TCTCCCTCCCTAG-AATACCAATTCATCCTCCT 421
consensus_11700#2 CCTAACAA-AAAAAGACC--TTCACA-TCTCCCTCCCTAGGAATACCAATTCATCCTCCT 372
consensus_11700#1 CCTAACAAGAAAAAGACCCGTTCACNATCTCCCNTCCCNC--GTAGAAAGATACNCGANA 422
******** ********* ***** ****** ** ** ** * *
consensus_11700#0 CTTCAGTTGCAACGG-ATAGTGTGCCTGCCGATGCGGCATCCCGAATCTGCCCGGCCTTC 480
consensus_11700#2 CTTCAGTTGCAACGGGATAGTGT------------------------------------- 395
consensus_11700#1 TTACATTCCGTACAC-CTCGTATACGAGGNTGTGCACAAGCGGGACTACGAGTGGTGC-C 480
* ** * ** * ** *
consensus_11700#0 TCGTCGCTTATGCCAAGCAGATACTGCAACCTTGACAGCTTTTCAGGCTTCGGAATGCTC 540
consensus_11700#2 ------------------------------------------------------------
consensus_11700#1 GTGCCGAGTTGGCGGGGCAAAT-CCGCG-------------------------------- 507
consensus_11700#0 TTCATGTAAATGCCGTACAGATCATCCAGCTCTCCTGATGTAGGCCATGATAGGGGCTTC 600
consensus_11700#2 ------------------------------------------------------------
consensus_11700#1 ------------------------------------------------------------
consensus_11700#0 GAAGCAGGCACAGCCGCGTCGCATGCAAGCAAGTCGTTCAAGGATGCGACCACTTCATCT 660
consensus_11700#2 ------------------------------------------------------------
consensus_11700#1 ------------------------------------------------------------
consensus_11700#0 TTCTTCTTCTGCCGAAGCAGAGCAACAGCTTGGACAAGGGCGTTATCCAACCTAATCTTC 720
consensus_11700#2 ------------------------------------------------------------
consensus_11700#1 ------------------------------------------------------------
consensus_11700#0 GCAATGTCCTGGACAATCGACTTGGCCTTCTCAGCATTAATGATGAGATCAGCTGGGATC 780
consensus_11700#2 ------------------------------------------------------------
consensus_11700#1 ------------------------------------------------------------
consensus_11700#0 TTTACATACACTTCCTCTTCATCAAATTCACCTGTGCCTGACGAAAAGATCT 832
consensus_11700#2 ----------------------------------------------------
consensus_11700#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||