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Oryza sativa
cluster # 11701 cluster # 11701       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11701#0 length = 1432 sequences # 6  
consensus_11701#1 length = 1226 sequences # 1  
consensus_11701#2 length = 756 sequences # 1  
consensus_11701#3 length = 470 sequences # 1  

consensusID : consensus_11701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1432
fasta sequence
                              [TCCAGGCCCAGGCCTCTTGTGTCTTGTAATGTAATCTAGGGTTTTGCTCCTTCTCTCATCCAGTAGCGGCGGCCGGCGGCGAGGGCAGCGGCGGCGGCATGGCGAACCGCACGGACCCCCTGGCGAAGAGCATCCACGGGACGAACCCTCAGAACCTGGTGGAGAAGATCGTCCGGTCCAAGATCTACCAGAGCACCTACTGGAAGGAGCAGTGCTTTGGCCTCACCGCCGAGACCCTCGTCGACAAGGCCATGGAGCTCGACCACACCGGCGGCACCTACGGCGGCAACCGCAAGCCCACCCCCTTCCTCTGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCGTCGAGTTCATCAA-GAACGAGGATTACAAGTA-TGTCCGTGTTC-TTGGTGCCTTCTACC-TTCGCC-TCACTGCCACCG-TCGCCGACGT-CTACCAAT-ACC-TCGAGCCGCTCTACAACGACTACCGCAAGATCAGGCACAAGCTCAGTGATGGAAAGTTTACCCTGACCCACGTCGACGGGTTCATTGACGACCTCCTCACCAAGGACTACTCCTGCGATACGGCCCTCCCCCGCATCCAGAAAAGATGGGTTCTTGAAACTTCTGGAACTCTAGAACCAAGAAGAAGTGCACTTGAAGATGATTTTGAGGAAGAGGAGGAAGACAAGGAGGATGAACAACCTATGGATATAGATGAGCCAAATGGTCGTGAAAAGCATGATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGACAGGGAGAGGAAACATG-AAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGGGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGATTTTTCTGACGACTTAAGCAGTACCGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTAAAAAA]

[+] EMBL AK064099             [TCCAGGCCCAGGCCTCTTGTGTCTTGTAATGTAATCTAGGGTTTTGCTCCTTCTCTCATCCAGTAGCGGCGGCCGGCGGCGAGGGCAGCGGCGGCGGCATGGCGAACCGCACGGACCCCCTGGCGAAGAGCATCCACGGGACGAACCCTCAGAACCTGGTGGAGAAGATCGTCCGGTCCAAGATCTACCAGAGCACCTACTGGAAGGAGCAGTGCTTTGGCCTCACCGCCGAGACCCTCGTCGACAAGGCCATGGAGCTCGACCACACCGGCGGCACCTACGGCGGCAACCGCAAGCCCACCCCCTTCCTCTGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCGTCGAGTTCATCAA GAACGAGGATTACAAGTA TGTCCGTGTTC TTGGTGCCTTCTACC TTCGCC TCACTGCCACCG TCGCCGACGT CTACCAAT ACC TCGAGCCGCTCTACAACGACTACCGCAAGATCAGGCACAAGCTCAGTGATGGAAAGTTTACCCTGACCCACGTCGACGGGTTCATTGACGACCTCCTCACCAAGGACTACTCCTGCGATACGGCCCTCCCCCGCATCCAGAAAAGATGGGTTCTTGAAACTTCTGGAACTCTAGAACCAAGAAGAAGTGCACTTGAAGATGATTTTGAGGAAGAGGAGGAAGACAAGGAGGATGAACAACCTATGGATATAGATGAGCCAAATGGTCGTGAAAAGCATGATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGACAGGGAGAGGAAACATG AAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGGGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGATTTTTCTGACGACTTAAGCAGTACCGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTGCCATATTATT                      ]
[+] EMBL C28672               [                           AATGTAATCTAGGGTTTTNCTCCTTCTCTCATCCAGTAGCGGCGGCCGGCGGCGAGGGCAGCGGCGGCGGCATGGCGAACCGCACGGACCCCCTGGCGAAGAGCATCCACGGGACGAACCCTCAGAACCTGGTGGAGAAGATCGTCCGGTCCAAGATCTACCAGAGCACCTACTGGAAGGAGCAGTGCTTTGGCCTCACCGCCGAGACCCTCGTCGACAAGGCCATGGAGCTCGACCACACCGGCGGCACCTACGGCGGCAACCGAAAGCCCACCCCCTTCCTCTGCCTCGNCCTCAAGATGCTNCAGATNCAGCCCGACAAGGACATCGTCGTCGAGTTCATCAAGGAACGAGGATTACAAGTATTGTCCGTGTTCTTTGGTGCCTTCTACCTTTGGCCTTAATTGCCAACGTTGGCCGAGGTNTTACCAATAACCTTNGAGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC0931              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGAAGAAGTGCACTTGAAGATGATTTTNAGGAAGAGGAGGAAGACAAGGAGGATGAACAACCTATGGATATAGATGAGCCAAATGGTCGTGAAAAGCATGATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGACAGGGAGAGGAAACATG AAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATTGCAGGGAAAGAGACCGNTGGGACAGAGACCGTTGGAGGCGCAGGAGCCGTTCAAGGNGC                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB624050             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGAAGTGCACTTGAAGATGATTTTGAGGAAGAGGAGGAAGACAAGGAGGATGAACAACCTATGGATATAGATGAGCCAAATGGTCGTGAAAAGCATGATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGACAGGGAGAGGAAACATG AAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCCGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGAGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGATTTTTCTGACGACTTAAGCAGTACCGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTTCCATATTATTACTTCGCTGTA           ]
[+] EMBL AU161741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGGAGAGGAAACATGAAAAGACACCACA GGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAaa                                                                                                                                                                                                                                                                ]
[+] EMBL AU100986             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACGAGATGAGGACTACAGTCGAGATAGGG CCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGTGGAAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGAAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGGGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGATTTTTCTGACGACTTAAGCAGTACCGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTAAAAAA]


>consensus_11701#0 TCCAGGCCCAGGCCTCTTGTGTCTTGTAATGTAATCTAGGGTTTTGCTCCTTCTCTCATC CAGTAGCGGCGGCCGGCGGCGAGGGCAGCGGCGGCGGCATGGCGAACCGCACGGACCCCC TGGCGAAGAGCATCCACGGGACGAACCCTCAGAACCTGGTGGAGAAGATCGTCCGGTCCA AGATCTACCAGAGCACCTACTGGAAGGAGCAGTGCTTTGGCCTCACCGCCGAGACCCTCG TCGACAAGGCCATGGAGCTCGACCACACCGGCGGCACCTACGGCGGCAACCGCAAGCCCA CCCCCTTCCTCTGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCG TCGAGTTCATCAAGAACGAGGATTACAAGTATGTCCGTGTTCTTGGTGCCTTCTACCTTC GCCTCACTGCCACCGTCGCCGACGTCTACCAATACCTCGAGCCGCTCTACAACGACTACC GCAAGATCAGGCACAAGCTCAGTGATGGAAAGTTTACCCTGACCCACGTCGACGGGTTCA TTGACGACCTCCTCACCAAGGACTACTCCTGCGATACGGCCCTCCCCCGCATCCAGAAAA GATGGGTTCTTGAAACTTCTGGAACTCTAGAACCAAGAAGAAGTGCACTTGAAGATGATT TTGAGGAAGAGGAGGAAGACAAGGAGGATGAACAACCTATGGATATAGATGAGCCAAATG GTCGTGAAAAGCATGATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGACAGGGAGA GGAAACATGAAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGG GACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGG ATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGG ACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGTGGGAGGC GCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAG AGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTG GCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGGGTGAAGGAAATG CACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTCCGAGCCTCTCTAGGGT TGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCTGATGTTTGAGCGCCTTTAGCTT TAGCTTGAAACCATGATTTTTCTGACGACTTAAGCAGTACCGCCTGTCAAAGAGTACAGC GTAGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTAAAAAA



consensusID : consensus_11701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1226
fasta sequence
                              [TTAGGTAACAATATATAGAGAGAGTAGTAGCAGAGATAATAATAAAACAGAAAGAAGAAAGAGAAGAAGAGGGGAGAGGAGAGAAAGAGAGTAAGAAAGAGATAGAGAAGAGAGAAAGGAGCGATAGGATAAAAAAGGAAGAGAAAAGATAAGAAAAGATAAATAAAGAGATAAAAAATATGATAAGATAAATAAGAAGAAAGNAAAAAGAGAGAAAAGGAGAAAGAGAAAAAACAGAAAAGGAGGAAAGAGTAGGAAGAAAGAGAGAGAAGAGAAGGAGAGAGAAGAATAATAAGAAAAGCAAGATGATAGAGGCGAAAAGAAATAAGAGGAGTGGAGAGGGGAGAGAGAGAAGAAAGAAGGAAGAGATAATAGAAGAAAAGATTGAGAAGGAGAAAGGAAGGAGGAGAGGAGAGTAAAATAAAGAGAGGGGAGGTATGGGAGAGATACAAAGATAAGAGAGTATAGAGGCGGAGAAAAAAAGAGATGACATATAACGAGAGGAAAAAGAGAAGAAGAGGAGAAGGAAAAGAGAGAATAATATAAGAGGAAGGGATGGGGAGGAACAAGTGACATATAACAATGAAATACAAAATAAGACAGAGCGCGAGAGGTCGAGGACAGGTGAGTCGAGGGAGGAAGAAGAAAGAAACAAGAAAGAGAAAGAAGGAGATGAAAGGAGAGTGTAGAGAAAGAAGAAGAGATAATAAAGAGAGAAAAGAAAAGATAACAAGGAAGAGGGGAGAGGAAAGAAAGAGATAAAAAGAGAAAGATAAAAGAGGAAAGAAGAAGAAATAAGAGAAGAAGCAGCAAAAACAGAAAAGAAGAGAGAGAACAAAGAAAGAAAGAGTAGAAGAAAAAAAAGAGAAAGATGAAGAGGGAATAGGGAAGAGGGAAAGGGAGGAGATGGGAAAGAGAGGAAGGAGGAGAAAAAAAGAAAAAAGAGAAGGGGGAGAAAAGAAAGAGGAGGAAAAGGAAAGTGAGGGAAAGAGAAAGGAGGGAAGGAAGTAAGAAAGAAAAGTAGTAAGAAGAAAGAAGAAAAGAAAAAAGAAAAAAAAAAGAAAAAAAACAAGAAAGGGAAAGACATGAAACAAAAAAAAAAAGACGGAACGTAGGGAGGCAGCCGCAAGCCCACCCCCTTCCTATGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCGTCGAGTTCATCAAGAACGAGGATTACAAGTCA]

[-] EMBL BE040951             [TTAGGTAACAATATATAGAGAGAGTAGTAGCAGAGATAATAATAAAACAGAAAGAAGAAAGAGAAGAAGAGGGGAGAGGAGAGAAAGAGAGTAAGAAAGAGATAGAGAAGAGAGAAAGGAGCGATAGGATAAAAAAGGAAGAGAAAAGATAAGAAAAGATAAATAAAGAGATAAAAAATATGATAAGATAAATAAGAAGAAAGNAAAAAGAGAGAAAAGGAGAAAGAGAAAAAACAGAAAAGGAGGAAAGAGTAGGAAGAAAGAGAGAGAAGAGAAGGAGAGAGAAGAATAATAAGAAAAGCAAGATGATAGAGGCGAAAAGAAATAAGAGGAGTGGAGAGGGGAGAGAGAGAAGAAAGAAGGAAGAGATAATAGAAGAAAAGATTGAGAAGGAGAAAGGAAGGAGGAGAGGAGAGTAAAATAAAGAGAGGGGAGGTATGGGAGAGATACAAAGATAAGAGAGTATAGAGGCGGAGAAAAAAAGAGATGACATATAACGAGAGGAAAAAGAGAAGAAGAGGAGAAGGAAAAGAGAGAATAATATAAGAGGAAGGGATGGGGAGGAACAAGTGACATATAACAATGAAATACAAAATAAGACAGAGCGCGAGAGGTCGAGGACAGGTGAGTCGAGGGAGGAAGAAGAAAGAAACAAGAAAGAGAAAGAAGGAGATGAAAGGAGAGTGTAGAGAAAGAAGAAGAGATAATAAAGAGAGAAAAGAAAAGATAACAAGGAAGAGGGGAGAGGAAAGAAAGAGATAAAAAGAGAAAGATAAAAGAGGAAAGAAGAAGAAATAAGAGAAGAAGCAGCAAAAACAGAAAAGAAGAGAGAGAACAAAGAAAGAAAGAGTAGAAGAAAAAAAAGAGAAAGATGAAGAGGGAATAGGGAAGAGGGAAAGGGAGGAGATGGGAAAGAGAGGAAGGAGGAGAAAAAAAGAAAAAAGAGAAGGGGGAGAAAAGAAAGAGGAGGAAAAGGAAAGTGAGGGAAAGAGAAAGGAGGGAAGGAAGTAAGAAAGAAAAGTAGTAAGAAGAAAGAAGAAAAGAAAAAAGAAAAAAAAAAGAAAAAAAACAAGAAAGGGAAAGACATGAAACAAAAAAAAAAAGACGGAACGTAGGGAGGCAGCCGCAAGCCCACCCCCTTCCTATGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCGTCGAGTTCATCAAGAACGAGGATTACAAGTCA]


>consensus_11701#1 TTAGGTAACAATATATAGAGAGAGTAGTAGCAGAGATAATAATAAAACAGAAAGAAGAAA GAGAAGAAGAGGGGAGAGGAGAGAAAGAGAGTAAGAAAGAGATAGAGAAGAGAGAAAGGA GCGATAGGATAAAAAAGGAAGAGAAAAGATAAGAAAAGATAAATAAAGAGATAAAAAATA TGATAAGATAAATAAGAAGAAAGNAAAAAGAGAGAAAAGGAGAAAGAGAAAAAACAGAAA AGGAGGAAAGAGTAGGAAGAAAGAGAGAGAAGAGAAGGAGAGAGAAGAATAATAAGAAAA GCAAGATGATAGAGGCGAAAAGAAATAAGAGGAGTGGAGAGGGGAGAGAGAGAAGAAAGA AGGAAGAGATAATAGAAGAAAAGATTGAGAAGGAGAAAGGAAGGAGGAGAGGAGAGTAAA ATAAAGAGAGGGGAGGTATGGGAGAGATACAAAGATAAGAGAGTATAGAGGCGGAGAAAA AAAGAGATGACATATAACGAGAGGAAAAAGAGAAGAAGAGGAGAAGGAAAAGAGAGAATA ATATAAGAGGAAGGGATGGGGAGGAACAAGTGACATATAACAATGAAATACAAAATAAGA CAGAGCGCGAGAGGTCGAGGACAGGTGAGTCGAGGGAGGAAGAAGAAAGAAACAAGAAAG AGAAAGAAGGAGATGAAAGGAGAGTGTAGAGAAAGAAGAAGAGATAATAAAGAGAGAAAA GAAAAGATAACAAGGAAGAGGGGAGAGGAAAGAAAGAGATAAAAAGAGAAAGATAAAAGA GGAAAGAAGAAGAAATAAGAGAAGAAGCAGCAAAAACAGAAAAGAAGAGAGAGAACAAAG AAAGAAAGAGTAGAAGAAAAAAAAGAGAAAGATGAAGAGGGAATAGGGAAGAGGGAAAGG GAGGAGATGGGAAAGAGAGGAAGGAGGAGAAAAAAAGAAAAAAGAGAAGGGGGAGAAAAG AAAGAGGAGGAAAAGGAAAGTGAGGGAAAGAGAAAGGAGGGAAGGAAGTAAGAAAGAAAA GTAGTAAGAAGAAAGAAGAAAAGAAAAAAGAAAAAAAAAAGAAAAAAAACAAGAAAGGGA AAGACATGAAACAAAAAAAAAAAGACGGAACGTAGGGAGGCAGCCGCAAGCCCACCCCCT TCCTATGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCGTCGAGT TCATCAAGAACGAGGATTACAAGTCA



consensusID : consensus_11701#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence
                              [TGAAAGACACCACAGAGCCATTGGTAGGTANGCCGCTTCCTAGAGTGAATGTGATCATGACCCTGCCAGGTTTCTCTGCACTGACAGTGTGCAGTGAGAAGTATGATGGGTTGGACAGATTAACAACTTATAAACTATAAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGATGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCCGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGAGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTNCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCCTGATGNTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGANTTTTTNTGACGACTTAAGCAGTACCGGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGGTTNCATATTATTACTT]

[+] EMBL CA766826             [TGAAAGACACCACAGAGCCATTGGTAGGTANGCCGCTTCCTAGAGTGAATGTGATCATGACCCTGCCAGGTTTCTCTGCACTGACAGTGTGCAGTGAGAAGTATGATGGGTTGGACAGATTAACAACTTATAAACTATAAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGGATGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCCGGGACAGAGACCGTGGGAGGCGCAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGAGTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGAGTGAAGGAAATGCACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTNCGAGCCTCTCTAGGGTTGAAACCACTGAAGTAGTAACCTTGATGTAATGCACCCTGATGNTTGAGCGCCTTTAGCTTTAGCTTGAAACCATGANTTTTTNTGACGACTTAAGCAGTACCGGCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGGTTNCATATTATTACTT]


>consensus_11701#2 TGAAAGACACCACAGAGCCATTGGTAGGTANGCCGCTTCCTAGAGTGAATGTGATCATGA CCCTGCCAGGTTTCTCTGCACTGACAGTGTGCAGTGAGAAGTATGATGGGTTGGACAGAT TAACAACTTATAAACTATAAGGGACCGAGATTACGACAGAGATCGGGATTATGGTAGGGG ATGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGAGATCGGGA TCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGAGATAGGGA CCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCCGGGACAGAGACCGTGGGAGGCG CAGGAGCCGTTCAAGGAGCAGGAGCAGGGATCGACGAGAAAGAGACCGAGAAGATGGAGA GTACCGTAGGAGGCGTGATCGGGGTAGTGCCAGTCCTCGAGGTCATGCGGAGGATGGTGG CTCAAGAGATGAGCCGAAGAAGAGAAAGGAAAAGAAAGAGAAGAAGAGTGAAGGAAATGC ACCAGATCCAAATGACCCAGAGATTATAGAAATGAACAAGCTNCGAGCCTCTCTAGGGTT GAAACCACTGAAGTAGTAACCTTGATGTAATGCACCCTGATGNTTGAGCGCCTTTAGCTT TAGCTTGAAACCATGANTTTTTNTGACGACTTAAGCAGTACCGGCCTGTCAAAGAGTACA GCGTAGGTGTAATTACCTGGTTNCATATTATTACTT



consensusID : consensus_11701#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [TGCGCACGGATGCCCGTTCAAGGAGCATGGAGCAGGGATCGACGAGAAAGAGACCGAGAATGATGGAGAGTACCTTAGGAGGCAGTGATCGGGGTAGTGCCAAGTCCTCGAGGTCATTCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGTAAAGGTAAAAGAAAGTAGAAGAAGGTGAAGGAAATGCACCAAGATGCCAAATGGACCCAGAGATTATGAGAAATGGAACAAGCTGCCGAGGCCTGCTGCTGAGGGGTTGGAAACCACCTGAAGTGAGTGAACCTTGGATGTGAATGGCACACTGGATGGTGTTGGAGCCGCCTGTTAGCTGTTGAGCATTGGAAACCACTGGATTTGTTGCTGGACGACTTAACAGTACCNNCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTATGTGTCTCAAAAAAAAA]

[+] EMBL BI806610             [TGCGCACGGATGCCCGTTCAAGGAGCATGGAGCAGGGATCGACGAGAAAGAGACCGAGAATGATGGAGAGTACCTTAGGAGGCAGTGATCGGGGTAGTGCCAAGTCCTCGAGGTCATTCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGTAAAGGTAAAAGAAAGTAGAAGAAGGTGAAGGAAATGCACCAAGATGCCAAATGGACCCAGAGATTATGAGAAATGGAACAAGCTGCCGAGGCCTGCTGCTGAGGGGTTGGAAACCACCTGAAGTGAGTGAACCTTGGATGTGAATGGCACACTGGATGGTGTTGGAGCCGCCTGTTAGCTGTTGAGCATTGGAAACCACTGGATTTGTTGCTGGACGACTTAACAGTACCNNCCTGTCAAAGAGTACAGCGTAGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTATGTGTCTCAAAAAAAAA]


>consensus_11701#3 TGCGCACGGATGCCCGTTCAAGGAGCATGGAGCAGGGATCGACGAGAAAGAGACCGAGAA TGATGGAGAGTACCTTAGGAGGCAGTGATCGGGGTAGTGCCAAGTCCTCGAGGTCATTCG GAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGTAAAGGTAAAAGAAAGTAGAAGAAG GTGAAGGAAATGCACCAAGATGCCAAATGGACCCAGAGATTATGAGAAATGGAACAAGCT GCCGAGGCCTGCTGCTGAGGGGTTGGAAACCACCTGAAGTGAGTGAACCTTGGATGTGAA TGGCACACTGGATGGTGTTGGAGCCGCCTGTTAGCTGTTGAGCATTGGAAACCACTGGAT TTGTTGCTGGACGACTTAACAGTACCNNCCTGTCAAAGAGTACAGCGTAGGTGTAATTAC CTGTTGCCATATTATTACTTCGCTGTAACGGTATGTGTCTCAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11701#0      TCCAGGCCCAGGCCTCTTGTGTCTTGTAATGTAATCTAGGGTTTTGCTCCTTCTCTCATC 60
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      ------------------------------------------------------------
                                                                                   

consensus_11701#0      CAGTAGCGGCGGCCGGCGGCGAGGGCAGCGGCGGCGGCATGGCGAACCGCACGGACCCCC 120
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      ------------------------------------------------------------
                                                                                   

consensus_11701#0      TGGCGAAGAGCATCCACGGGACGAACCCTCAGAACCTGGTGGAGAAGATCGTCCGGTCCA 180
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      ------------------------------------------------------------
                                                                                   

consensus_11701#0      AGATCTACCAGAGCACCTACTGGAAGGAGCAGTGCTTTGGCCTCACCGCCGAGACCCTCG 240
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      --------------------------------------------------------TTAG 4
                                                                                   

consensus_11701#0      TCGACAAGGCCATGGAGCTCGACCACACCGGCGGCACCTACGGCGGCAACCGCAAGCCCA 300
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      GTAACAATATATAGAGAGAGTAGTAGCAGAGATAATAATAAAACAGAAAGAAGAAAGAGA 64
                                                                                   

consensus_11701#0      CCCCCTTCCTCTGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGTCG 360
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AGAAGAGGGGAGAGGAGAGAAAGAGAGTAAGAAAGAGATAGAGAAGAGAGAAAGGAGCGA 124
                                                                                   

consensus_11701#0      TCGAGTTCATCAAGAACGAGGATTACAAGTATGTCCGTGTTCTTGG-TGCCTTCTACCTT 419
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      TAGGATAAAAAAGGAAGAGAAAAGATAAGAAAAGATAAATAAAGAGATAAAAAATATGAT 184
                                                                                   

consensus_11701#0      CGCCTCACTGCCACCGTCGCCGACGTCTACCAATACCTCGAGCCGCTCTACAACGACTAC 479
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AAGATAAATAAGAAGAAAGNAAAAAGAGAGAAAAGGAGAAAGAGAAAAAACAGAAAAGGA 244
                                                                                   

consensus_11701#0      CGCAAGATCAGGCACAAGCTCAGTGATGGAAAGTTTACCCTGACCCACGTCGACGGGTTC 539
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      GGAAAGAGTAGGAAGAAAGAGAGAGAAGAGAAGGAGAGAGAAGAATAATAAGAAAAGCAA 304
                                                                                   

consensus_11701#0      ATTGACGACCTCCTCACCAAGGACTACTCCTGCGATACGGCCCTCCCCCGCATCCAGAAA 599
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      GATGATAGAGGCGAAAAGAAATAAGAGGAGTGGAGAGGGGAGAGAGAGAAGAAAGAAGGA 364
                                                                                   

consensus_11701#0      AGATGGGTTCTTGAAACTTCTGGAACTCTAGAACCAAGAAGAAGTGCACTTGAAGATGAT 659
consensus_11701#2      ------------------------------------------------------------
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AGAGATAATAGAAGAAAAGATTGAGAAGGAGAAAGGAAGGAGGAGAGGAGAGTAAAATAA 424
                                                                                   

consensus_11701#0      TTTGAGGAAGAGGAGGAAGACAA-GGAGGATGAACAACCTATGGATATAGATGAGCCAAA 718
consensus_11701#2      --TGAAAGACACCACAGAGCCATTGGTAGGTANGCCGCTTCCTAGAGTGAATGTGATCA- 57
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AGAGAGGGGAGGTATGGGAGAGATACAAAGATAAGAGAGTATAGAGGCGGAGAAAAAAAG 484
                                                                                   

consensus_11701#0      TGGTCGTGAAAAGCATG-----ATCATTATCGTGGAAGGAGCCCTACTAGAGATCGAGAC 773
consensus_11701#2      TGACCCTGCCAGGTTTCTCTGCACTGACAGTGTGCAGTGAGAAGTATGATGGGTTG-GAC 116
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AGATGACATATAACGAGAGGAAAAAGAGAAGAAGAGGAGAAGGAAAAGAGAGAATAATAT 544
                                                                                   

consensus_11701#0      AGGGAGAGGAAACATGAAAGACACCACAGGGACCGAGATTACGACAGAGATCGGGATTAT 833
consensus_11701#2      AGATTAACAACTTATAAACTATA----AGGGACCGAGATTACGACAGAGATCGGGATTAT 172
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AAGAGGAAGGGATGGGGAGGA------ACAAGTGACATATAACAATGAAATACAAAATAA 598
                                                                                   

consensus_11701#0      GGTAGGGGACGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGA 893
consensus_11701#2      GGTAGGGGATGGGAAAGAGACCGAGATAGAGACCGTGAAAGAGATAGAGACAGGGATAGA 232
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      GACAGAGCGCGAGAGGTCGAGGACAGGTGAGTCGAGGGAGGAAGAAGAAAGAAACA-AGA 657
                                                                                   

consensus_11701#0      GATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGA 953
consensus_11701#2      GATCGGGATCGGGATCGGGATCGAGACCGTCATCGCATACGAGATGAGGACTACAGTCGA 292
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AAGAGAAAGAAGGAGATGAAAGGAGAGTGTAGAGAAAGAAGAAGAGATAATAAAGAGAGA 717
                                                                                   

consensus_11701#0      GATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCTGGGACAGAGACCGT 1013
consensus_11701#2      GATAGGGACCGAGCAAGAGATAGGGATGGCAGGGAAAGAGAACGCCGGGACAGAGACCGT 352
consensus_11701#3      ------------------------------------------------------------
consensus_11701#1      AAAGAAAAGATAACAAGGAAGAGGGGAGAGGAAAGAAAGAGATAAAAAGAGAAAGATAAA 777
                                                                                   

consensus_11701#0      GGGAGGCGCAGGAGCC-GTTCAAGGAGCA-GGAGCAGGGATCGACGAGAA---AGAGACC 1068
consensus_11701#2      GGGAGGCGCAGGAGCC-GTTCAAGGAGCA-GGAGCAGGGATCGACGAGAA---AGAGACC 407
consensus_11701#3      --TGCGCACGGATGCCCGTTCAAGGAGCATGGAGCAGGGATCGACGAGAA---AGAGACC 55
consensus_11701#1      AGAGGAAAGAAGAAGAAATAAGAGAAGAA-GCAGCAAAAACAGAAAAGAAGAGAGAGAAC 836
                                         *   ** ** * * ****   *  **  ****   ***** *

consensus_11701#0      GAGAA-GATGGAGAGTACCGTAGGAGGC-GTGATCGGGGTAGTGCCA---GTCCTCGAGG 1123
consensus_11701#2      GAGAA-GATGGAGAGTACCGTAGGAGGC-GTGATCGGGGTAGTGCCA---GTCCTCGAGG 462
consensus_11701#3      GAGAATGATGGAGAGTACCTTAGGAGGCAGTGATCGGGGTAGTGCCAA--GTCCTCGAGG 113
consensus_11701#1      AAAGA-AAGAAAGAGTAGAAGAAAAAAAAGAGAAAGATGAAGAGGGAATAGGGAAGAGGG 895
                        *  *  *   ******    *  *    * **  *  * ** *  *   *       **

consensus_11701#0      TCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGG--AAAAGAAAGAG 1181
consensus_11701#2      TCATGCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGAAAGG--AAAAGAAAGAG 520
consensus_11701#3      TCATTCGGAGGATGGTGGCTCAAGAGATGAGCCGAAGAAGAGTAAAGGTAAAAGAAAGTA 173
consensus_11701#1      AAAGGGAGGAGATGGGAAAGAGAGGAAGGAGGAGAAAAAAAGAAAAAAGAGAAGGGGGAG 955
                         *    *  *****       **  * ***  *** ** ** **    * ***   *  

consensus_11701#0      AAGA-AGGGTGAAGGAAATGCACCA-GAT-CCAAATG-ACCCAGAGATTAT-AGAAATG- 1235
consensus_11701#2      AAGA-AGAGTGAAGGAAATGCACCA-GAT-CCAAATG-ACCCAGAGATTAT-AGAAATG- 574
consensus_11701#3      GAAG-AAGGTGAAGGAAATGCACCAAGATGCCAAATGGACCCAGAGATTATGAGAAATGG 232
consensus_11701#1      AAAAGAAAGAGGAGGAAAAGGAAAGTGAGGGAAAGAGAAAGGAGGGAAGGA-AGTAAGAA 1014
                        *   *  * * ****** * *    **    **  * *   ** **     ** **   

consensus_11701#0      AACAAGCT-CCGAGCCTCTCTA-----GGGTTG-AAACCAC-TGAAGT-AGT-AACCTTG 1285
consensus_11701#2      AACAAGCT-NCGAGCCTCTCTA-----GGGTTG-AAACCAC-TGAAGT-AGT-AACCTTG 624
consensus_11701#3      AACAAGCTGCCGAGGCCTGCTGCTGAGGGGTTGGAAACCACCTGAAGTGAGTGAACCTTG 292
consensus_11701#1      AGAAAAGTAGTAAGAAGAAAGAAGAAAAGAAAAAAGAAAAAAAAAAGAAAAA-AAACAAG 1073
                       *  **  *    **              *     * *  *    ***  *   ** *  *

consensus_11701#0      -ATGTAA----TGCACC---TGATGTTTGAGC-GCCT-TTAGCTTTAG----CTTGAAAC 1331
consensus_11701#2      -ATGTAA----TGCACCC--TGATGNTTGAGC-GCCT-TTAGCTTTAG----CTTGAAAC 671
consensus_11701#3      GATGTGAATGGCACACTGGATGGTGTTGGAGCCGCCTGTTAGCTGTTGAGCATTGGAAAC 352
consensus_11701#1      AAAGGGAAAGACATGAAACAAAAAAAAAAAGACGGAACGTAGG-GAGGCAGCCGCAAGCC 1132
                        * *  *                      **  *     ***     *        *  *

consensus_11701#0      CAT--GATTTTT---CTGACGACTTAAGCAGTACCG---CCTGTCAAA-GAGTACAGCGT 1382
consensus_11701#2      CAT--GANTTTTT--NTGACGACTTAAGCAGTACCGG--CCTGTCAAA-GAGTACAGCGT 724
consensus_11701#3      CACTGGATTTGTTGCTGGACGACTTAA-CAGTACCNN--CCTGTCAAA-GAGTACAGCGT 408
consensus_11701#1      CACCCCCTTCCTATGCCTCGCCCTCAAGATGCTCCAGATCCAGCCCGACAAGGACATCGT 1192
                       **      *  *          ** **   *  **    ** * *  *  ** *** ***

consensus_11701#0      AGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTAAAAAA---------- 1432
consensus_11701#2      AGGTGTAATTACCTGGTTNCATATTATTACTT---------------------------- 756
consensus_11701#3      AGGTGTAATTACCTGTTGCCATATTATTACTTCGCTGTAACGGTATGTGTCTCAAAAAAA 468
consensus_11701#1      CGTCGAGTTCATCAAGAACGAGGATTACAAGTCA-------------------------- 1226
                        *  *   * * *       *   *   *  *                            

consensus_11701#0      --
consensus_11701#2      --
consensus_11701#3      AA 470
consensus_11701#1      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)