These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1672 fasta sequence [GCCACCGCCCCCCGCCGCCGTGGCGGCAGTGTCAGCGGCGGCGGCGACCGCCGGCATCAGCGAGAAGAAGAAGGAGGAGGGCGGTGGCGACGCCGTGACGGGGCACATCATCTCCACCACCATCGGCGGCAAGAACGGCGAGCCGAAGCGGACAATTAGTTATATGGCGGAGCGAGTTGTAGGAACTGGTTCTTTCGGGATTGTGTTCCAGGCTAAGTGCTTGGAGACGGGGGAAACGGTGGCCATCAAGAAGGTGTTGCAGGACCGGCGTTACAAGAACCGTGAACTGCAGCTTATGCGCGCAATGGAACACCCCAATGTCATCTGCCTGAAGCACTGCTTCTTCTCAACCACAAGCAGGGATGAGCTGTTCCTGAATCTTGTTATGGAGTACGTCCCTGAGACACTCTACCGTGTGCTCAAGCACTACAGCAATGCTAACCAGCGGATGCCATTGATCTATGTGAAGCTTTACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCCACTGTTTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAACGTTCTTGGTACTCCAACCCGTGAGGAAAT-CGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTGGGCACAAGATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAACTAGCCAGCGCCTCTCCAGAACTCATCCACAGGCTCATACCGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAAAGGGCACCGCGACGCCACCGTTTTGTTCGTTTA-TTTTTCCAT-GAGCTGGACATTGCAATCCTAGATGACTCCATTGT-CCTGGACTTGGACTCCAT-CTCAGATTGCACCAT-CCATGTTCCATGATCCATCCATCCGTCAAGCCATTTCCGCAAGGACTCAGTACCAGAGAAGAAGTACAATTATGTAAATTATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGT-AAGGTT-AAGGATAAATGTA-GTT-GGTGGAGACTGAG-AGACATGTTAAGCTA-GGGAACCCTGCTTTCC-TTCTTTTTTTTTTCTCCTTTCATTTTGGTTTCTTCCCATTTTGTGATCCTTAGCATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAACCCTCTTTCCTTCAAAAAAAAAAAG] [+] EMBL CB621367 [GCCACCGCCCCCCGCCGCCGTGGCGGCAGTGTCAGCGGCGGCGGCGACCGCCGGCATCAGCGAGAAGAAGAAGGAGGAGGGCGGTGGCGACGCCGTGACGGGGCACATCATCTCCACCACCATCGGCGGCAAGAACGGCGAGCCGAAGCGGACAATTAGTTATATGGCGGAGCGAGTTGTAGGAACTGGTTCTTTCGGGATTGTGTTCCAGGCTAAGTGCTTGGAGACGGGGGAAACGGTGGCCATCAAGAAGGTGTTGCAGGACCGGCGTTACAAGAACCGTGAACTGCAGCTTATGCGCGCAATGGAACACCCCAATGTCATCTGCCTGAAGCACTGCTTCTTCTCAACCACAAGCAGGGATGAGCTGTTCCTGAATCTTGTTATGGAGTACGTCCCTGAGACACTCTACCGTGTGCTCAAGCACTACAGCAATGCTAACCAGCGGATGCCATTGATCTATGTGAAGCTTTACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCC ] [+] EMBL CF304195 [ ACCGCCGGCATCAGCGAGAAGAAGAAGGAGGAGGGCGGGGGCGACGCCGTGACGGGTCACATCATCTCCACCACCATCGGCGGCAAGAACGGCGAGCCGAAGCGGACAATTAGTTATATGGCGGAGCGAGTTGTAGGAACTGGTTCTTTCGGGATTGTGTTCCAGGCTAAGTGCTTGGAGACGGGGGAAACGGTGGCCATCAAGAAGGTGTTGCAGGACCGGCGTTACAAGAACCGTGAACTGCAGCTTATGCGCGCAATGGAACACCCCAATGTCATCTGCCTGAAGCACTGCTTCTTCTCAACCACAAGCAGGGATGAGCTGTTCCTGAATCTTGTTATGGAGTACGTCCCTGAGACACTCTACCGTGTGCTCAAGCACTACAGCAATGCTAACCAGCGGATGCCATTGATCTATGTGAAGCTNTACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAA ] [+] EMBL CA753470 [ ACCGGCGTTACAAGAACCGTGAACTGCAGCTTATGCGCGCAATGGAACACCCCAATGTCATCTGCCTGAAGCACTGCTTCTTCTCAACCACAAGCAGGGATGAGCTGTTCCTGAATCTTGTTATGGAGTACGTCCCTGAGACACTCTACCGTGTGCTCAAGCACTACAGCAATGCTAACCAGCGGATGCCATTGATCTATGTGAAGCTTTACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCCACTGTCTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAACGTTCTTGGTACTCCAACCCGTGAGGAAAT CGATGCATGAACCCC ACTATACTGAGTTCAAA TCCCTCAGA TAACGCTCATCTTGGGCAC AGAATCTCCACAg ] [+] EMBL C22614 [ TACCGTGTGCTCAAGCACTACAGCAATGCTAACCAGCGGATGCCATTGATCTATGTGAAGCTTTACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTNGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTAATTCTTGGTCAGCCA TGNTTCCTGG ] [+] EMBL AK099863 [ TACATCTATCAGCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATATGGTCAGCTGGATGCGTTCTTGCAGAGTTACTTCTTGGTCAGCCACTGTTTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAAGGTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAACTAGCCAGCGCCTCTCCAGAACTCATCCACAGGCTCATACCGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAAAGGGCACCGCGACGCCACCGTTTTGTTCGTTTA TTTTTCCAT GAGCTGGACATTGCAATCCTAGATGACTCCATTGT CCTGGACTTGGACTCCAT CTCAGATTGCACCAT CCATGTTCCATGATCCATCCATCCGTCAAGCCATTTCCGCAAGGACTCAGTACCAGAGAAGAAGTACAATTATGTAAATTATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGT AAGGTT AAGGATAAATGTA GTT GGTGGAGACTGAG AGACATGTTAAGCTA GGGAACCCTGCTTTCC TTCTTTTTTTTTTCTCCTTTCATTTTGGTTTCTTCCCATTTTGTGATCCTTAGCATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAACCC ] [-] EMBL CB621368 [ CCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTGGGCACAAGATTTTTCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAACTAGCCGGCGCCTCTCCAGAACTCATCCACAGGCTCATACCGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAAAGGGCACCGCGACGCCACCGTTTTGTTCGTTTA TTTTTCCAT GAGCTGGACATTGCAATCCTAGATGACTCCATTGT CCTGGACTTGGACTCCAT CTCAGATTGCACCAT CCATGTTCCATGATCCATCCATCCGTCAAGCCATTTCCGCAAGGACTCAGTACCAGAGAAGAAGTACAATTATGTAAATTATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGT AAGGTT AAGGATAAATGTA GTT GGTGGAGACTGAG AGACATGTTAAGCTA GGGAACCCTGCTTTCC TTC TTTTTTTTTCTCCTTTCATTTTGGTTTCTTCCCATTTTGTGATCCTTAGCATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAACCCTCTTTCCTTCAAAAAAAAAAAG] [+] EMBL C27920 [ CGGATCATATCAGACGGCAACATGGCCTCAACTTTGCGCATGCTGGGAGCTAAAGGGCACCGCGACGCCACCGTTTTGTTCGTTTA TTTTTCCAT GAGCTGGACATTGCAATCCTAGATGACTCCATTGT CCTGGACTTGGACTCCAT CTCANATTGCACCAT CCATGTTCCATGATCCATCCATCCGTCAAGCCATTTCCGCAA GACTCAGTACCAGAGAAGAAGTACAATTATGTAAATNATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGTAAAGGTTAAAGGATAAATGTAGGTTNGTTGGAGACTGNGAAGACATGTTAAGCTANGGGAACCCTGCTTTCCNTCCTTTTTTTTTNCCCCTTCAATTTTGGTTTTTCCCCTTTTTGT ] [+] EMBL AU032448 [ CGTTTATTTTTTCCATGGAGCTGGACATTGCAATCCTAGATGACTCCATTGTCCCTGGACTTGGACTCCATCCTCAGATTGCACCATCCCATGTTCCATGATCCATCCATCCGTCAAGCCATTTCCGCAAGGACTCAGTACCAGAGAAGAAGTACAATTATGTAAATTATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGT AAGGTT AAGGATAAATGTA GTT GGTGGAGACTGAG AGACATGTTAAGCTA GGGAACCCTGCTTTCC TTCTTTTTTTTTTCTCCTTTCATTTTGGTTTCTTCCCATTTTGTGATCCTTAGCATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAACCCTCTTTCCTTCAAAAAAAA ] [+] EMBL CF331135 [ TGATCCATCCATCCGTCAAGCCATTTCCGCAAGGACTCAGTACCAGAGAAGAAGTACAATTATGTAAATTATCTAACCATGGAGAAATGCGTGCTGCTGCTGCTGGTGTTAAGTACGTGACGGGGCATGCTGGTTGAGTAGTAGGT AAGGTT AAGGATAAATGTA GTT GGTGGAGACTGAG AGACATGTTAAGCTA GGGAACCCTGCTTTCC TTCTTTTTTTTTTCTCCTTTCATTTTGGTTTCTTCCCATTTTGTGATCCTTAGCATTGCCCTACAGTAGTGTAGCTGCTCCCTGTTTTTGTTTGCTCTTTCATCATGTAAATGCCAATCCCAATCGCAATGAACC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||