These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2861 fasta sequence [CCAAATCCCTTCTCTCTACCCTATTCCCCACCTCCGCCTCCGCCGTAATCCCACCTCCCCGGCCACCGCCGCCGCCGTCACTCCGGCCACCGCACCGTAACTCCCACTGCGGAAGCAGCCCAGGAGGTAGGCGGTGAAGCGGGGGGTGGGAGGTTTTAGACTAGACGGCGCGCCGCTCGCCGGCGAGGTCGCCCAGCCCCATGCCACCCGCGCGCGTCGACCGGTCGGAGATGAGGCAGAACACAAGTCACCAAGGTTCCAATGATCCCAGAGTACAAAAGGAAAGGCAAGCAGAATGGGCCAGACCTGGAAGAGTTTTTAATAGGAACACTAACAAAGGAGGTTACTTTCGGAATTCATTGCCTGGAGTCACTAGGGAGTTTCGTGTTGTGAAAGACAATCGACAGAAGGTAGTTGGTGAGACTATACCAGGATCATTTCATAATGGAGTCCCAAGCAATGAACAGATCGCTTCCAATATTGGAGACAAAAGCTCAACTGAAAAGTTACCTGCACAACGCCATCCGGTTACTCAAAATTCTAATGGACGTGGGGTAGCTCAAGCTGATAATGGACGCAAAGAAGTCAAGCCTTCTAATGACCAAACAGTGGGACAATCTGATGGGATGATTACAACAATGGTTGGTTCACATGCAGTTCTAGCAAAGGGTAATCAGAACAGAGTGCTTGCTGTGCCATCAGGAACAAATAATTTTACTGGTGAACTTTGCTGCTCTTCGTCAGATCCAATACATGTACCCTCTCCTGGTTCTAAATCAGCTGGGACTTTTGGAGCAATAAAGCGTGAGGTTGGAGTAGTTGGTGCTAGGCAACGGCCATCTGATAATACAGCAACAAATACATCCACTTCAAACAGTTCAGTTAAGGTGCCAACAAGTACAGCAACAAAAGAGAATGCTTCAAATGGACAGCAATCTAGATCCTCTGGTGTATCATCGAAAAACTCCCGTCCTAGTTCATCTACACACTTGAGCAGTAGACCATCTTCTTCGAGTCAATATCATTCTAAGCCAAATACTCCTGTTGGTCATCCAAAAGTGAACCCACAATTGGAGTGGAAACCCAAATCAGTAAGCCCCAGTCCTGCCAATCATGCAGATAATGTGGTACATTCTAGTGCTGCATCATCTGTTGATGGTAATCAGGCACACATGGCTGGTTTGCCTAAGAAGCTTTCACAAACTAATGTTTCTGAAGATGAGCATGTCATCATACCTGCACACCTCAGGGTACCAGACTCAGAAAGAACACATCTTATATTTGGTAATTTTGAATGTGATGTTGAGTCGAAGGCTTTTACATTAGCTCCTGATGCTTCAACTAACAGAGAGTTTAATGCCCATTCTTCTTCAAGATCAACTGATGATGTGCCTCCTACTGACCAGACGGATCTTGTTGGCTCTTGTGTCATGCTTCCGAAATCAGATTCCTTTGTTTCAGTTTCCGAATATCAGCACCCATTGACTGAGGACATGGAGGTCTTGAGTCCAGGTGTTTTTGGAGAGCATAGGACAAATGATATGATTTCAACCCAGGTCTCACATTCTTCACCTCAACCCCAGCATCAGGACAATTCAGCAGTGCATGACTTTAAGGAATATGAGCCAGATTCTAGGTATGAGATGCCATTTATCACTAAAGCTGTTGATAGTGAGGCGACCCAAAATATACCTTATCCGTCTGAGGTGATGGGCTTGCATGCTGCAAATTTCAATCAGTTATCTGTTACTGCAGCAACTCAGCACCCAGTGCCTCAAATGTACCACATGCATGTATCGCAATATCCAAACTGCTTGCCATATCGACATGTTTTCTCTCCATACTATGTGCCTCCAGTGGCTGTTCAAAACTATTCAAGCAATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATTTGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTCATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGCCCCACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGT-CCGCCGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTC-GGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAATGTGTGCTCCGAAATGCTTTATGAGTTCAACTCAAATCGCATGATAATTCC] [+] EMBL AK072079 [CCAAATCCCTTCTCTCTACCCTATTCCCCACCTCCGCCTCCGCCGTAATCCCACCTCCCCGGCCACCGCCGCCGCCGTCACTCCGGCCACCGCACCGTAACTCCCACTGCGGAAGCAGCCCAGGAGGTAGGCGGTGAAGCGGGGGGTGGGAGGTTTTAGACTAGACGGCGCGCCGCTCGCCGGCGAGGTCGCCCAGCCCCATGCCACCCGCGCGCGTCGACCGGTCGGAGATGAGGCAGAACACAAGTCACCAAGGTTCCAATGATCCCAGAGTACAAAAGGAAAGGCAAGCAGAATGGGCCAGACCTGGAAGAGTTTTTAATAGGAACACTAACAAAGGAGGTTACTTTCGGAATTCATTGCCTGGAGTCACTAGGGAGTTTCGTGTTGTGAAAGACAATCGACAGAAGGTAGTTGGTGAGACTATACCAGGATCATTTCATAATGGAGTCCCAAGCAATGAACAGATCGCTTCCAATATTGGAGACAAAAGCTCAACTGAAAAGTTACCTGCACAACGCCATCCGGTTACTCAAAATTCTAATGGACGTGGGGTAGCTCAAGCTGATAATGGACGCAAAGAAGTCAAGCCTTCTAATGACCAAACAGTGGGACAATCTGATGGGATGATTACAACAATGGTTGGTTCACATGCAGTTCTAGCAAAGGGTAATCAGAACAGAGTGCTTGCTGTGCCATCAGGAACAAATAATTTTACTGGTGAACTTTGCTGCTCTTCGTCAGATCCAATACATGTACCCTCTCCTGGTTCTAAATCAGCTGGGACTTTTGGAGCAATAAAGCGTGAGGTTGGAGTAGTTGGTGCTAGGCAACGGCCATCTGATAATACAGCAACAAATACATCCACTTCAAACAGTTCAGTTAAGGTGCCAACAAGTACAGCAACAAAAGAGAATGCTTCAAATGGACAGCAATCTAGATCCTCTGGTGTATCATCGAAAAACTCCCGTCCTAGTTCATCTACACACTTGAGCAGTAGACCATCTTCTTCGAGTCAATATCATTCTAAGCCAAATACTCCTGTTGGTCATCCAAAAGTGAACCCACAATTGGAGTGGAAACCCAAATCAGTAAGCCCCAGTCCTGCCAATCATGCAGATAATGTGGTACATTCTAGTGCTGCATCATCTGTTGATGGTAATCAGGCACACATGGCTGGTTTGCCTAAGAAGCTTTCACAAACTAATGTTTCTGAAGATGAGCATGTCATCATACCTGCACACCTCAGGGTACCAGACTCAGAAAGAACACATCTTATATTTGGTAATTTTGAATGTGATGTTGAGTCGAAGGCTTTTACATTAGCTCCTGATGCTTCAACTAACAGAGAGTTTAATGCCCATTCTTCTTCAAGATCAACTGATGATGTGCCTCCTACTGACCAGACGGATCTTGTTGGCTCTTGTGTCATGCTTCCGAAATCAGATTCCTTTGTTTCAGTTTCCGAATATCAGCACCCATTGACTGAGGACATGGAGGTCTTGAGTCCAGGTGTTTTTGGAGAGCATAGGACAAATGATATGATTTCAACCCAGGTCTCACATTCTTCACCTCAACCCCAGCATCAGGACAATTCAGCAGTGCATGACTTTAAGGAATATGAGCCAGATTCTAGGTATGAGATGCCATTTATCACTAAAGCTGTTGATAGTGAGGCGACCCAAAATATACCTTATCCGTCTGAGGTGATGGGCTTGCATGCTGCAAATTTCAATCAGTTATCTGTTACTGCAGCAACTCAGCACCCAGTGCCTCAAATGTACCACATGCATGTATCGCAATATCCAAACTGCTTGCCATATCGACATGTTTTCTCTCCATACTATGTGCCTCCAGTGGCTGTTCAAAACTATTCAAGCAATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATTTGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTCATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGCCCCACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGT CCGCCGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTC GGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAATGTGTGCTCCGAAATGCTTTATGAGTTCAACTCAAATCGCATGATAATTCC] [+] EMBL AK120207 [CCAAATCCCTTCTCTCTACCCTATTCCCCACCTCCGCCTCCGCCGTAATCCCACCTCCCCGGCCACCGCCGCCGCCGTCACTCCGGCCACCGCACCGTAACTCCCACTGCGGAAGCAGCCCAGGAGGTAGGCGGTGAAGCGGGGGGTGGGAGGTTTTAGACTAGACGGCGCGCCGCTCGCCGGCGAGGTCGCCCAGCCCCATGCCACCCGCGCGCGTCGACCGGTCGGAGATGAGGCAGAACACAAGTCACCAAGGTTCCAATGATCCCAGAGTACAAAAGGAAAGGCAAGCAGAATGGGCCAGACCTGGAAGAGTTTTTAATAGGAACACTAACAAAGGAGGTTACTTTCGGAATTCATTGCCTGGAGTCACTAGGGAGTTTCGTGTTGTGAAAGACAATCGACAGAAGGTAGTTGGTGAGACTATACCAGGATCATTTCATAATGGAGTCCCAAGCAATGAACAGATCGCTTCCAATATTGGAGACAAAAGCTCAACTGAAAAGTTACCTGCACAACGCCATCCGGTTACTCAAAATTCTAATGGACGTGGGGTAGCTCAAGCTGATAATGGACGCAAAGAAGTCAAGCCTTCTAATGACCAAACAGTGGGACAATCTGATGGGATGATTACAACAATGGTTGGTTCACATGCAGTTCTAGCAAAGGGTAATCAGAACAGAGTGCTTGCTGTGCCATCAGGAACAAATAATTTTACTGGTGAACTTTGCTGCTCTTCGTCAGATCCAATACATGTACCCTCTCCTGGTTCTAAATCAGCTGGGACTTTTGGAGCAATAAAGCGTGAGGTTGGAGTAGTTGGTGCTAGGCAACGGCCATCTGATAATACAGCAACAAATACATCCACTTCAAACAGTTCAGTTAAGGTGCCAACAAGTACAGCAACAAAAGAGAATGCTTCAAATGGACAGCAATCTAGATCCTCTGGTGTATCATCGAAAAACTCCCGTCCTAGTTCATCTACACACTTGAGCAGTAGACCATCTTCTTCGAGTCAATATCATTCTAAGCCAAATACTCCTGTTGGTCATCCAAAAGTGAACCCACAATTGGAGTGGAAACCCAAATCAGTAAGCCCCAGTCCTGCCAATCATGCAGATAATGTGGTACATTCTAGTGCTGCATCATCTGTTGATGGTAATCAGGCACACATGGCTGGTTTGTCTAAGAAGCTTTCACAAACTAATGTTTCTGAAGATGAGCATGTCATCATACCTGCACACCTCAGGGTACCAGACTCAGAAAGAACACATCTTATATTTGGTAATTTTGAATGTGATGTTGAGTCGAAGGCTTTTACATTAGCTCCTGATGCTTCAACTAACAGAGAGTTTAATGCCCATTCTTCTTCAAGATCAACTGATGATGTGCCTCCTACTGACCAGACGGATCTTGTTGGCTCTTGTGTCATGCTTCCGAAATCAGATTCCTTTGTTTCAGTTTCCGAATATCAGCACCCATTGACTGAGGACATGGAGGTCTTGAGTCCAGGTGTTTTTGGAGAGCATAGGACAAATGATATGATTTCAACCCAGGTCTCACATTCTTCACCTCAACCCCAGCATCAGGACAATTCAGCAGTGCATGACTTTAAGGAATATGAGCCAGATTCTAGGTATGAGATGCCATTTATCACTAAAGCTGTTGATAGTGAGGCGACCCAAAATATACCTTATCCGTCTGAGGTGATGGGCTTGCATGCTGCAAATTTCAATCAGTTATCTGTTACTGCAGCAACTCAGCACCCAGTGCCTCAAATGTACCACATGCATGTATCGCAATATCCAAACTGCTTGCCATATCGACATGTTTTCTCTCCATACTATGTGCCTCCAGTGGCTGTTCAAAACTATTCAAGCAATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATTTGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTCATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGGCCCACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGT CCGCCGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTC GGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAATGTGTGCTCCGAAATGCTTTATGAGTTCAACTC ] [+] EMBL CB677838 [ AGGCGTTTTTGGAGAGCATAGGACAAATGATATGATTTCAACCCAGGTCTCACATTCTTCACCTCAACCCCAGCATCAGGACAATTCAGCAGTGCATGACTTTAAGGAATATGAGCCAGATTCTAGGTATGAGATGCCATTTATCACTAAAGCTGTTGATAGTGAGGCGACCCAAAATATACCTTATCCGTCTGAGGTGATGGGCTTGCATGCTGCAAATTTCAATCAGTTATCTGTTACTGCAGCAACTCAGCACCCAGTGCCTCAAATGTACCACATGCATGTATCGCAATATCCAAACTGCTTGCCATATCGACATGTTTTCTCTCCATACTATGTGCCTCCAGTGGCTGTTCAAAACTATTCAAGCAATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATTTGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTCATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTG ] [+] EMBL AU055960 [ ATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATTTGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTCATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGCCCCACGGACTGCAGCCGANAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGT CCGCCGTTGGCTGGAAATATCGGCATTGATATGGNAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAANTCAGCCATCTCGGGCTGGGNTCCTCCCAGTTTTTTATGATGATTTGGATGGGAGTGCTCTCATGAGACGANAAGTGAG ] [-] EMBL CB677839 [ TTCCCTGGTGGCCNTGCTGGATACGGTGG TTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGCCCCACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGT CCGCCGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTC GGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATC ] [+] EMBL AU055961 [ CTACAACATGATGGCCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATNCCCCTTTCAGCCCAGTTCAACACCCTGCTCACCTNCAGTTCCCAGCCATGCCCCACGGACTGCANCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGTCCCGCCGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAGCATTTCAGCAAAACCAACTCAGCCATCTC GGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAGAAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGTAACTCATGATACTTGCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTCCAGTTCATCTTGCACCGCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTTATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAATGTGTGCTCCGAAATGCTTTATGAGTTCAACTCAAATCGCAaaaa ] consensusID : consensus_11718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [TGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACATAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCAAGTTCAACACCCTGCTCACCTGCAGTTTCCAACCATGCCCTACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATTAGCCAGCCGGTCCGACGATGGCTGAAATATCGGGATTGATATGGGAGCCATGGCTCTAGAAGCTCATGTTGGAGCCTGTCAGTAAACCTACTGAGGCATTTCGGCTGGGCTTCTCCCAGCTTTTGTGATGATTTGCATGGAGATGCCCTATGAAAATAACAGGACCGGTCTTTTATGGGAAGTAAAAGAAAATAATGAACTGGTGGGAGAGTTCCGTTTAATGCAGTCACTTTGATCTTTGCCCCATCGGCATTGCGCGGTTGAAATTATAACATTTTATTCTTGTCCTTTTATTATTTTGTCAAGATAAGAAACAAATTATCCGTATATTATCTTTTGACTGAGGGTATCGGTGTACCGCTCGGTATTATTATCGCCACGGTT] [+] EMBL BE040350 [TGGTTTTACAAATCAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATATGAGTAAATATAAGGACAACAATCTTTACACACATAACCCTCAGGCTGAAACAGCAGATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTTTCAGCCAAGTTCAACACCCTGCTCACCTGCAGTTTCCAACCATGCCCTACGGACTGCAGCCGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATTAGCCAGCCGGTCCGACGATGGCTGAAATATCGGGATTGATATGGGAGCCATGGCTCTAGAAGCTCATGTTGGAGCCTGTCAGTAAACCTACTGAGGCATTTCGGCTGGGCTTCTCCCAGCTTTTGTGATGATTTGCATGGAGATGCCCTATGAAAATAACAGGACCGGTCTTTTATGGGAAGTAAAAGAAAATAATGAACTGGTGGGAGAGTTCCGTTTAATGCAGTCACTTTGATCTTTGCCCCATCGGCATTGCGCGGTTGAAATTATAACATTTTATTCTTGTCCTTTTATTATTTTGTCAAGATAAGAAACAAATTATCCGTATATTATCTTTTGACTGAGGGTATCGGTGTACCGCTCGGTATTATTATCGCCACGGTT] consensusID : consensus_11718#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TTGTCATCCACCACTTTCACCACAAGTTCAACACCACTTGTCACACTCATGTTCCCAACCCATGCACCCACAGGACTCACCGACAATACGATGACCATGGTCAAGAACCCAACAACCCATGGTGCATCACCAGCCGTCCACCCATTGTCTGGAAATATCGCATTGATATGCAGCCATGGCTTCTGGAGCTCAGGTTGGACATTTCAGCAAAAACCAACTCAGCCATCTCGGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGCAGTGCTCTCATGAGACGACAAGTGACCTGTTTTCGTATCGA] [+] EMBL BI800867 [TTGTCATCCACCACTTTCACCACAAGTTCAACACCACTTGTCACACTCATGTTCCCAACCCATGCACCCACAGGACTCACCGACAATACGATGACCATGGTCAAGAACCCAACAACCCATGGTGCATCACCAGCCGTCCACCCATTGTCTGGAAATATCGCATTGATATGCAGCCATGGCTTCTGGAGCTCAGGTTGGACATTTCAGCAAAAACCAACTCAGCCATCTCGGCTGGGCTCCTCCCAGTTTTTTATGATGATTTGGATGCAGTGCTCTCATGAGACGACAAGTGACCTGTTTTCGTATCGA] consensusID : consensus_11718#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 128 fasta sequence [AGACCTGATTGAGGAGCTATGCTCTAATGCAAGTAACTCATGATACTTNCCACCTTTGGTTTATNATGCAGGGAAAACCATGTAAGTATTCCANTCCATCTTGCACCGCCCAAAGCGTGTCCTGCNTT] [+] EMBL D43448 [AGACCTGATTGAGGAGCTATGCTCTAATGCAAGTAACTCATGATACTTNCCACCTTTGGTTTATNATGCAGGGAAAACCATGTAAGTATTCCANTCCATCTTGCACCGCCCAAAGCGTGTCCTGCNTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11718#0 CCAAATCCCTTCTCTCTACCCTATTCCCCACCTCCGCCTCCGCCGTAATCCCACCTCCCC 60 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 GGCCACCGCCGCCGCCGTCACTCCGGCCACCGCACCGTAACTCCCACTGCGGAAGCAGCC 120 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CAGGAGGTAGGCGGTGAAGCGGGGGGTGGGAGGTTTTAGACTAGACGGCGCGCCGCTCGC 180 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CGGCGAGGTCGCCCAGCCCCATGCCACCCGCGCGCGTCGACCGGTCGGAGATGAGGCAGA 240 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ACACAAGTCACCAAGGTTCCAATGATCCCAGAGTACAAAAGGAAAGGCAAGCAGAATGGG 300 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CCAGACCTGGAAGAGTTTTTAATAGGAACACTAACAAAGGAGGTTACTTTCGGAATTCAT 360 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TGCCTGGAGTCACTAGGGAGTTTCGTGTTGTGAAAGACAATCGACAGAAGGTAGTTGGTG 420 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AGACTATACCAGGATCATTTCATAATGGAGTCCCAAGCAATGAACAGATCGCTTCCAATA 480 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TTGGAGACAAAAGCTCAACTGAAAAGTTACCTGCACAACGCCATCCGGTTACTCAAAATT 540 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTAATGGACGTGGGGTAGCTCAAGCTGATAATGGACGCAAAGAAGTCAAGCCTTCTAATG 600 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ACCAAACAGTGGGACAATCTGATGGGATGATTACAACAATGGTTGGTTCACATGCAGTTC 660 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TAGCAAAGGGTAATCAGAACAGAGTGCTTGCTGTGCCATCAGGAACAAATAATTTTACTG 720 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 GTGAACTTTGCTGCTCTTCGTCAGATCCAATACATGTACCCTCTCCTGGTTCTAAATCAG 780 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTGGGACTTTTGGAGCAATAAAGCGTGAGGTTGGAGTAGTTGGTGCTAGGCAACGGCCAT 840 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTGATAATACAGCAACAAATACATCCACTTCAAACAGTTCAGTTAAGGTGCCAACAAGTA 900 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CAGCAACAAAAGAGAATGCTTCAAATGGACAGCAATCTAGATCCTCTGGTGTATCATCGA 960 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AAAACTCCCGTCCTAGTTCATCTACACACTTGAGCAGTAGACCATCTTCTTCGAGTCAAT 1020 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ATCATTCTAAGCCAAATACTCCTGTTGGTCATCCAAAAGTGAACCCACAATTGGAGTGGA 1080 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AACCCAAATCAGTAAGCCCCAGTCCTGCCAATCATGCAGATAATGTGGTACATTCTAGTG 1140 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTGCATCATCTGTTGATGGTAATCAGGCACACATGGCTGGTTTGCCTAAGAAGCTTTCAC 1200 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AAACTAATGTTTCTGAAGATGAGCATGTCATCATACCTGCACACCTCAGGGTACCAGACT 1260 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CAGAAAGAACACATCTTATATTTGGTAATTTTGAATGTGATGTTGAGTCGAAGGCTTTTA 1320 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CATTAGCTCCTGATGCTTCAACTAACAGAGAGTTTAATGCCCATTCTTCTTCAAGATCAA 1380 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTGATGATGTGCCTCCTACTGACCAGACGGATCTTGTTGGCTCTTGTGTCATGCTTCCGA 1440 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AATCAGATTCCTTTGTTTCAGTTTCCGAATATCAGCACCCATTGACTGAGGACATGGAGG 1500 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TCTTGAGTCCAGGTGTTTTTGGAGAGCATAGGACAAATGATATGATTTCAACCCAGGTCT 1560 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CACATTCTTCACCTCAACCCCAGCATCAGGACAATTCAGCAGTGCATGACTTTAAGGAAT 1620 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ATGAGCCAGATTCTAGGTATGAGATGCCATTTATCACTAAAGCTGTTGATAGTGAGGCGA 1680 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CCCAAAATATACCTTATCCGTCTGAGGTGATGGGCTTGCATGCTGCAAATTTCAATCAGT 1740 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TATCTGTTACTGCAGCAACTCAGCACCCAGTGCCTCAAATGTACCACATGCATGTATCGC 1800 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 AATATCCAAACTGCTTGCCATATCGACATGTTTTCTCTCCATACTATGTGCCTCCAGTGG 1860 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CTGTTCAAAACTATTCAAGCAATCCAGCATTTACACAATTGCCAAGTGCCAGCAGCTATT 1920 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TGGTAATGCCAAACGGAACGTCACAGCTAGCACCCAATGGCATGAAATATGGACCACCTC 1980 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ATCAGTGTAAGCAAATGTTCCCTGGTGGCCCTGCTGGATACGGTGGTTTTACAAATCAGA 2040 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCCAATA 2100 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TGAGTAAATATAAGGACAACAATCTTTACACACTCAACCCTCAGGCTGAAACAGCAGATG 2160 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAACATGA 2220 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCATGCCCCTT 2280 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ------------------------------------------------------------ consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TCAGCCCAGTTCAACACCCTGCTCACCTGCAGTTCCCAGCCATGCCCCACGGACTGCAGC 2340 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 -----------------------------------------------TGGTTTTACAAAT 13 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CGACAACGATGACCATGGTGCAGAACCCACAACCCATGGTGCATCAGCCAGCCTGTCCGC 2400 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 CAGAATGGTTACCCAGTCAATACTGGTGTAATTGGTGGCACTGGTAGTGTCGAAGATGCC 73 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CGTTGGCTGGAAATATCGGCATTGATATGGCAGCCATGGCTTCTGGAGCTCAGGTTGGAG 2460 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 AATATGAGTAAATATAAGGACAACAATCTTTACACACATAACCCTCAGGCTGAAACAGCA 133 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 CATTTCAGCAAAACCAACTCAGCCATCTCGGCTGGGCTCCTCCCAGTTTTTTATGATGAT 2520 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 GATGTGTGGATTCAGGCTCCTACAGATATTCCCGTCATGCCGTCAACACCATTCTACAAC 193 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 TTGGATGGCAGTGCTCTCATGAGACGACAAGTGAGCTGGTTTCGTATCGACAAGAAAAAG 2580 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ATGATGGGCCAACCAATGTCTCCCCATACAGCATACTTGCCACCGCACAATGGTCAT--G 251 consensus_11718#2 --------------------------------------------------TTGTCATCCA 10 consensus_11718#0 AAAAGAAAAGAACTGATTGAAGAGCTATGCTCTAATGCAAGT----AACTCATGATACTT 2636 consensus_11718#3 --------AGACCTGATTGAGGAGCTATGCTCTAATGCAAGT----AACTCATGATACTT 48 consensus_11718#1 CCCCTTTCAGC-CAAGTTCAACACC-CTGCTCACCTGCA-GTTTCCAACC-ATG-C-CCT 305 consensus_11718#2 CCACTTTCACCACAAGTTCAACACCACTTGTCACACTCATGTTCCCAACCCATG-CACCC 69 * * ** * * * * ** ** ** *** *** * consensus_11718#0 GCCACCTTTTGTTTATGATGCAGGGAAAAACATGTTAGTATTC-CAGTTCATCTTGCACC 2695 consensus_11718#3 NCCACCTTTGGTTTATNATGCAGGGAAAACCATGTAAGTATTC-CANTCCATCTTGCACC 107 consensus_11718#1 ACGGACTGCAGCCGACAA--CGATGACCATGGTGCAGAACCCA-CAACCCATGGTGCATT 362 consensus_11718#2 ACAGGACTCA-CCGACAATACGATGACCATGGTCAAGAACCCAACAACCCATGGTGCATC 128 * * * * ** * * ** *** **** consensus_11718#0 GCCCAAAGCGTGTCCTGCATTGGAAACACCAATTTTGACTGCCAGTTTGCTATCTTATTT 2755 consensus_11718#3 GCCCAAAGCGTGTCCTGCNTT--------------------------------------- 128 consensus_11718#1 AGCC--AGCCGGTCCGACGATGGCTG-AAATATCGGGATTGATATGGGAGCCATGGCTCT 419 consensus_11718#2 A-CC--AGCCGTCCACCCATTGTCTGGAAATATCGC-ATTGATATGC-AGCCATGGCTTC 183 ** *** * * * consensus_11718#0 ATTTCTGGTTTTATAGTATACATCAGTTCGATCTTAACTTTTCTGATCGATGAAATGTGT 2815 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 AGAAGCTCATGTTGGAGCCTGTCAGTAAA--CCTACTGAGGCATTTCGGCTGGGCTTCTC 477 consensus_11718#2 TGGAGCTCAGGTTGGA-CATTTCAGCAAAAACCAACTCAGCCATCTCGGCTGGGCTCCTC 242 consensus_11718#0 GCTCCGAAATGCTTTATGAGTTCAACTCAAATCGCATGATAATTCC-------------- 2861 consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 CCAGCTTTT-GTGATGATTTGCATGGAGATGCCCTATGAAA--ATAACAGGACCGGTCTT 534 consensus_11718#2 CCAGTTTTTTATGATGATTTGGATGCAGTGCTCTCATGAGACGACAAGTGACCTGTTTTC 302 consensus_11718#0 ------------------------------------------------------------ consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 TTATGGGAAGTAAAAGAAAATAATGAACTGGTGGGAGAGTTCCGTTTAATGCAGTCACTT 594 consensus_11718#2 GTATCGA----------------------------------------------------- 309 consensus_11718#0 ------------------------------------------------------------ consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 TGATCTTTGCCCCATCGGCATTGCGCGGTTGAAATTATAACATTTTATTCTTGTCCTTTT 654 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 ------------------------------------------------------------ consensus_11718#3 ------------------------------------------------------------ consensus_11718#1 ATTATTTTGTCAAGATAAGAAACAAATTATCCGTATATTATCTTTTGACTGAGGGTATCG 714 consensus_11718#2 ------------------------------------------------------------ consensus_11718#0 -------------------------------- consensus_11718#3 -------------------------------- consensus_11718#1 GTGTACCGCTCGGTATTATTATCGCCACGGTT 746 consensus_11718#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||