cluster # 11749

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Oryza sativa
cluster # 11749 cluster # 11749 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11749#0 length = 1582 sequences # 4

consensus_11749#1 length = 1557 sequences # 4
consensus_11749#2 length = 747 sequences # 1

consensusID : consensus_11749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1582
fasta sequence

                              [CTGCTCCCTCCCTCCATCCCTTGCTCGCTCGCGCCACAACGTTATCCTCTCCTCGTAGATGTGGCCACAGTTTTTGCAGCCGGAACGAGCTGTCCAGGCTACTACTCCTACTAGCCATCTCCCACCCACTTATCACGAGGCTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATACCCTTTAGACAAAGTTGTTGTTGTTGTTTTTTTTTTTTAAATGATCGCTGGGTGATCCCTTATATCAGCTCTTTGTTCCTGCCACGCCATGCGTCATGTAATAATAACTGGGCGGAAAGAAATTCTT]

[+] EMBL AK070660             [CTGCTCCCTCCCTCCATCCCTTGCTCGCTCGCGCCACAACGTTATCCTCTCCTCGTAGATGTGGCCACAGTTTTTGCAGCCGGAACGAGCTGTCCAGGCTACTACTCCTACTAGCCATCTCCCACCCACTTATCACGAGGCTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATACCCTTTAGACAAAGTTGTTGTTGTTGTTTTTTTTTTTTAAATGATCGCTGGGTGATCCCTTATATCAGCTCTTTGTTCCTGCCACGCCATGCGTCATGTAATAATAACTGGGCGGAAAGAAATTCTT]
[+] EMBL AK060398             [                                                                                                                                    TCACGAGGCTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATA                                                                                                                               ]
[+] EMBL CB663155             [                                                                                                                                                                                              ACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU096344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           nAAGATGCCTTTGCACNTACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTNCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACNACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGANAAAATCATGCAAGCTGGGNAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATACCCTTTAGACAAAaaaa                                                                                                              ]




>consensus_11749#0
CTGCTCCCTCCCTCCATCCCTTGCTCGCTCGCGCCACAACGTTATCCTCTCCTCGTAGAT
GTGGCCACAGTTTTTGCAGCCGGAACGAGCTGTCCAGGCTACTACTCCTACTAGCCATCT
CCCACCCACTTATCACGAGGCTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTA
GCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGA
GCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCC
CTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGAC
GACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCC
ACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCC
ACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTA
CGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGA
GATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAA
GCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGG
GAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGAT
GATTGATGTCAAAGAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAA
GATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGT
TGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAA
GAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGT
TGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGC
AGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACA
TTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAG
TGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTC
TTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATG
CAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTT
TGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCT
TGGCAAATGGCAATACCCTTTAGACAAAGTTGTTGTTGTTGTTTTTTTTTTTTAAATGAT
CGCTGGGTGATCCCTTATATCAGCTCTTTGTTCCTGCCACGCCATGCGTCATGTAATAAT
AACTGGGCGGAAAGAAATTCTT

consensusID : consensus_11749#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1557
fasta sequence

                              [CTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACGTATCCTTTTCGGCTTATGTGAAACTGTTTTGTTCTTCGCTGTTTTTCTAATTTTACAATCTCTGCTACAAATCACTAGTTTCCCTACGCTACATTTTTTCTTTCCAGAAGTGGTGTGGATGCTTTTAACACCAATAATTTCGGGTAGCACATGTATAGCAGCAGAGTAACCCAATTTGCATCCAGATTCCAGAGTTCTCCTCAACATTTTGGTCAGATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGC]

[+] EMBL AK106080             [CTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACGTATCCTTTTCGGCTTATGTGAAACTGTTTTGTTCTTCGCTGTTTTTCTAATTTTACAATCTCTGCTACAAATCACTAGTTTCCCTACGCTACATTTTTTCTTTCCAGAAGTGGTGTGGATGCTTTTAACACCAATAATTTCGGGTAGCACATGTATAGCAGCAGAGTAACCCAATTTGCATCCAGATTCCAGAGTTCTCCTCAACATTTTGGTCAGATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGC]
[+] EMBL OSS12779A            [  AACCCGCATNGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATNGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTNGTCCCCNGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS13545A            [   ACCCGCATGGGCGCGCGCCAAGNAGGCGGGAGGAGTAGCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCNAGCACGCTCCATAGCCCTCTGCCATGGCGGCANTTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTGGTCCCCGGCGCACCG GCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTGGACTNGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGT GGCGGCGGTG CTTCNGAGCACGG TTTTTCCAG CCCAG CACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB673119             [                                            ACCGCCACCCTCACCAGCAGCATCATGGTGCAGGTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGACCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGGATTGCCACCACTACGACGACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCAGCGGCGGGGCCTCCCGAGCACGGCTTGTCCCAGCCCCATCCACAAGCGCGGGCGGAGGGCTCGGACTATGCCGCCCTCGGCGACGCCAAGGACTCGCTCTACGCCGCTCTGGAAGGCATGAACAAAGGGATATTCGGGATGACCTCCGAGAAAAGGACAGAGATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCATGACAAGGAGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCTATACTGGGGAAGAAGAGGACAAAGTTGGGACTGACAGATTTCATCATCTTATGAGATTTCTTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_11749#1
CTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTAGCACACCGCCACCATCACCA
GCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGAGCACGCTCCATAGCCCTCTG
CCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCCCTTCCTCCGTCCGTCGTCCC
CGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGACGACGAGCACGAGCGGGAGGA
GGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCCACGGCGACGCGCGGCGTCGG
CGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCCACAGGCGCGGGCGGTGGGCT
CGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTACGCCGCTCTGGAAGGCATGA
ACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGAGATTCACGCACTGGTGGAGC
TCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAAGCTGCAGGACAAGGTGGATG
GATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGGGAAGAAGAGGACAAAGTTGG
GACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGATGATTGATGTCAAAGAGATTT
AGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAG
GGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAA
AACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATAT
TTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGAT
AACGTATCCTTTTCGGCTTATGTGAAACTGTTTTGTTCTTCGCTGTTTTTCTAATTTTAC
AATCTCTGCTACAAATCACTAGTTTCCCTACGCTACATTTTTTCTTTCCAGAAGTGGTGT
GGATGCTTTTAACACCAATAATTTCGGGTAGCACATGTATAGCAGCAGAGTAACCCAATT
TGCATCCAGATTCCAGAGTTCTCCTCAACATTTTGGTCAGATACGTTGATGAATCTCTAC
GGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAG
TTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATG
CCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGC
TCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAA
GGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACA
CTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATT
TTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGC

consensusID : consensus_11749#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [TTTTATACTGGCAAACCAAGTCAGTTTTGATTTTTGATATATCTTGAAATAAATGGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATAC]

[-] EMBL CB673120             [TTTTATACTGGCAAACCAAGTCAGTTTTGATTTTTGATATATCTTGAAATAAATGGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAGATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATAC]




>consensus_11749#2
TTTTATACTGGCAAACCAAGTCAGTTTTGATTTTTGATATATCTTGAAATAAATGGAGAT
TTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAATGTGATAAAATTCAGTGCA
AGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGCTTCGTACAAGATAACTACT
AAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCACTCCTGATCAGCTGATGAAT
ATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAACCCAGAAGGCTGGCTAGAG
ATAACATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTG
CTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCAT
ATACATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTT
TTAACAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCT
ATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGG
GAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTA
CTTTTGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATG
AGTGTACAGCTTGGCAAATGGCAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11749#1      ------------------------------------------------------------
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      CTGCTCCCTCCCTCCATCCCTTGCTCGCTCGCGCCACAACGTTATCCTCTCCTCGTAGAT 60
                                                                                   

consensus_11749#1      ------------------------------------------------------------
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GTGGCCACAGTTTTTGCAGCCGGAACGAGCTGTCCAGGCTACTACTCCTACTAGCCATCT 120
                                                                                   

consensus_11749#1      --------------------CTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTA 40
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      CCCACCCACTTATCACGAGGCTAACCCGCATGGGCGCGCGCCAAGGAGGCGGGAGGAGTA 180
                                                                                   

consensus_11749#1      GCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGA 100
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GCACACCGCCACCATCACCAGCAGCAGCATGGTGCAGCTGAGCCGCCGCCGGCACCGCGA 240
                                                                                   

consensus_11749#1      GCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCC 160
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GCACGCTCCATAGCCCTCTGCCATGGCGGCAGCTTCCGTCCTCCTCCTCCTCCCTTCCCC 300
                                                                                   

consensus_11749#1      CTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGAC 220
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      CTTCCTCCGTCCGTCGTCCCCGGCGCACCGCGCGCGCTGCGGCATTGCCACCACGACGAC 360
                                                                                   

consensus_11749#1      GACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCC 280
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GACGAGCACGAGCGGGAGGAGGGGGCTCTTCCTCTTCGCCTCGCGCTGCCGCCCCGGCCC 420
                                                                                   

consensus_11749#1      ACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCC 340
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      ACGGCGACGCGCGGCGTCGGCGGCGGTGCCTCCCGAGCACGGCTTGTCCCAGCCCCAGCC 480
                                                                                   

consensus_11749#1      ACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTA 400
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      ACAGGCGCGGGCGGTGGGCTCGTACGAGGCCGCCCTCGGCGACGCCAAGGACGCGCTCTA 540
                                                                                   

consensus_11749#1      CGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGA 460
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      CGCCGCTCTGGAAGGCATGAACAGAGGGATATTCGGGATGACCTCCGAGAAAAGGTCGGA 600
                                                                                   

consensus_11749#1      GATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAA 520
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GATTCACGCACTGGTGGAGCTCCTCGAGTCCAAGAACCCAACGCCGGAGCCAACCGACAA 660
                                                                                   

consensus_11749#1      GCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGG 580
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      GCTGCAGGACAAGGTGGATGGATGCTGGAGGCTCGTCTATAGCACGATTTCGATACTGGG 720
                                                                                   

consensus_11749#1      GAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGAT 640
consensus_11749#2      ---------------TTTTATACTGGCAAACCAAGTCAGTTTTG---ATTTTTGATATAT 42
consensus_11749#0      GAAGAAGAGGACAAAGTTGGGACTGAGAGATTTCATCAGCTTAGGAGATTTCTTCCAGAT 780
                                       **   ****  * *     **** ** *   **** *   * **

consensus_11749#1      GATTGATGTCAA-AGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAA 699
consensus_11749#2      C-TTGAAATAAATGGAGATTTAGCATCACCTTCTCTACACCCAAAGGAAAAGGCGGTAAA 101
consensus_11749#0      GATTGATGTCAA------------------------------AGAGGAAAAGGCGGTAAA 810
                         ****  * **                              * ****************

consensus_11749#1      TGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGC 759
consensus_11749#2      TGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGC 161
consensus_11749#0      TGTGATAAAATTCAGTGCAAGGGCGTTGAAGATATTATCTGGCCAACTTACTATTGAAGC 870
                       ************************************************************

consensus_11749#1      TTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCAC 819
consensus_11749#2      TTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCAC 221
consensus_11749#0      TTCGTACAAGATAACTACTAAAACAAAGGTTGATATCACGCTTGATAGTTCGACCATCAC 930
                       ************************************************************

consensus_11749#1      TCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAA 879
consensus_11749#2      TCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAA 281
consensus_11749#0      TCCTGATCAGCTGATGAATATTTTCCAGAAGAACTATGATATGCTCCTTGCTATATTCAA 990
                       ************************************************************

consensus_11749#1      CCCAGAAGGCTGGCTAGAGATAACGTATCCTTTTCGGCTTATGTGAAACTGTTTTGTTCT 939
consensus_11749#2      CCCAGAAGGCTGGCTAGAGATAAC------------------------------------ 305
consensus_11749#0      CCCAGAAGGCTGGCTAGAGATAAC------------------------------------ 1014
                       ************************                                    

consensus_11749#1      TCGCTGTTTTTCTAATTTTACAATCTCTGCTACAAATCACTAGTTTCCCTACGCTACATT 999
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      ------------------------------------------------------------
                                                                                   

consensus_11749#1      TTTTCTTTCCAGAAGTGGTGTGGATGCTTTTAACACCAATAATTTCGGGTAGCACATGTA 1059
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      ------------------------------------------------------------
                                                                                   

consensus_11749#1      TAGCAGCAGAGTAACCCAATTTGCATCCAGATTCCAGAGTTCTCCTCAACATTTTGGTCA 1119
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      ------------------------------------------------------------
                                                                                   

consensus_11749#1      GATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGG 1179
consensus_11749#2      -ATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGG 364
consensus_11749#0      -ATACGTTGATGAATCTCTACGGATAGGAAGAGATGACAAGGCAAACATCTTTGTGCTGG 1073
                        ***********************************************************

consensus_11749#1      AGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATAC 1239
consensus_11749#2      AGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATAC 424
consensus_11749#0      AGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATAC 1133
                       ************************************************************

consensus_11749#1      ATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAA 1299
consensus_11749#2      ATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAA 484
consensus_11749#0      ATGGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAA 1193
                       ************************************************************

consensus_11749#1      CAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTT 1359
consensus_11749#2      CAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTT 544
consensus_11749#0      CAGCCAGTGCAGATCGTGTGCTCAACTTTCCATTTGCGTTAGATTATACTACTGCTATTT 1253
                       ************************************************************

consensus_11749#1      TTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAA 1419
consensus_11749#2      TTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAA 604
consensus_11749#0      TTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAAATCATGCAAGCTGGGAAA 1313
                       ************************************************************

consensus_11749#1      GCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTT 1479
consensus_11749#2      GCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTT 664
consensus_11749#0      GCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTT 1373
                       ************************************************************

consensus_11749#1      TGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTG 1539
consensus_11749#2      TGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTG 724
consensus_11749#0      TGAATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTG 1433
                       ************************************************************

consensus_11749#1      TACAGCTTGGCAAATGGC------------------------------------------ 1557
consensus_11749#2      TACAGCTTGGCAAATGGCAATAC------------------------------------- 747
consensus_11749#0      TACAGCTTGGCAAATGGCAATACCCTTTAGACAAAGTTGTTGTTGTTGTTTTTTTTTTTT 1493
                       ******************                                          

consensus_11749#1      ------------------------------------------------------------
consensus_11749#2      ------------------------------------------------------------
consensus_11749#0      AAATGATCGCTGGGTGATCCCTTATATCAGCTCTTTGTTCCTGCCACGCCATGCGTCATG 1553
                                                                                   

consensus_11749#1      -----------------------------
consensus_11749#2      -----------------------------
consensus_11749#0      TAATAATAACTGGGCGGAAAGAAATTCTT 1582