Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11755 cluster # 11755       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11755#0 length = 2167 sequences # 7  
consensus_11755#1 length = 784 sequences # 1  
consensus_11755#2 length = 245 sequences # 1  

consensusID : consensus_11755#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2167
fasta sequence
                              [AGCTCAATCAATCATCGAGCTAGCTGAGCTAGCTA-AGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCC--TTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGGGCTTCGGATATCCTCGGAGTCCGACACCAAATCAATGGCGTACCAGGGCATCGACCTTCTC-TCGACGAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTACGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGCCGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACGCTCGCCT-TCTGCCTCGCC-AACCC-CGGCGAGGC-CTTC-CTC-GTGCCCAC-GCCATACTACCCAGCTTTCGACC-GCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGC-CCTCGTGTCGGC-GTACGAC-GGC-GCACGGAGGCAGGGCATCTC-C-GTCAAGGGGATC-CTCATCACCAACCCGTCCAACCCGCTC-GGCACCATCACC-GACC-GCGACACGC-TGGCCATGCTC-GCCACCTTCGCCACCGAGCACCGCGTCCACCTC-GTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCC-GGAGTACGTGAGCATCGCCGAGGTCATCGAGC-GCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTACAGCCTCTCCAAGGACTTCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAACGAC-GCCGTCGTGGCGGCCGCGCGCAGGATGTCCAGCTTCGGGCTCGTCTCGTCGCAGACGCAGTACTTCCTCGCCAGGATGCTCTCGGACGAGGAGTTCATCGGCCGCTTCCTCCAGGAGAGCAAGTGTCGGCTGGTGGCGCGGCACGAGCGGTTCACCTCTGGCCTCCGCGAGGTCGGGATCGGCTGCCTGCGCGGCAACGCCGGGCTGTTCTCGTGGATGGACCTGCGCCGCATGCTCCGGGAGAAGACGGCCGAGGCGGAGCTGGAGCTGTGGCGGGTGATCGTACACCAGGTAAAGCTGAACGTGTCGCCCGGCACGTCGTTCCACTGCCGCGAGCCCGGGTGGTTCCGCGTCTGCCACGCCAACATGGACGACGAGACCATGGAGGTCGCGCTCGGCCGGATCCACGACTTCGTGCGCCAGCACCAGCAGCGCAGGGTCAAGGCCGAGCGCTGGGCCGCCAATAGGCAGCTCCGCCTCAGCCTGCCGCACCACCACCACCTCAGCCCAGCCCATCTCTCCAGTCCATTGGCGCTCCTGTCGCCGCAGTCCCCGATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTGCTCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTTCATAACCATTTTTTTCTCGATCGCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTGATCGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGTAGAGACGTGCGTTAGTGCGTACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGTAGCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCGATTCTTTTGTGTATGGTTTGGTTAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTCTTGTAAACTGTAAAGTGTAAACATGTTACACTTACAATAAGGCTTAGGATTGAATCGATCCGGATATATTGAATCTGTATAGCAGGTCTTCAACGTGCATCTTGCATGTGGACTTGTTCATACGAATTT]

[+] EMBL AK064250             [AGCTCAATCAATCATCGAGCTAGCTGAGCTAGCTA AGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCCTTTTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGGGCTTCGGATATCCTCGGAGTCCGACACCAAATCAATGGCGTACCAGGGCATCGACCTTCTC TCGACGAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTACGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGCCGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACGCTCGCCT TCTGCCTCGCC AACCC CGGCGAGGC CTTC CTC GTGCCCAC GCCATACTACCCAGCTTTCGACC GCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGC CCTCGTGTCGGC GTACGAC GGC GCACGGAGGCAGGGCATCTC C GTCAAGGGGATC CTCATCACCAACCCGTCCAACCCGCTC GGCACCATCACC GACC GCGACACGC TGGCCATGCTC GCCACCTTCGCCACCGAGCACCGCGTCCACCTC GTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCC GGAGTACGTGAGCATCGCCGAGGTCATCGAGC GCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTACAGCCTCTCCAAGGACTTCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAACGAC GCCGTCGTGGCGGCCGCGCGCAGGATGTCCAGCTTCGGGCTCGTCTCGTCGCAGACGCAGTACTTCCTCGCCAGGATGCTCTCGGACGAGGAGTTCATCGGCCGCTTCCTCCAGGAGAGCAAGTGTCGGCTGGTGGCGCGGCACGAGCGGTTCACCTCTGGCCTCCGCGAGGTCGGGATCGGCTGCCTGCGCGGCAACGCCGGGCTGTTCTCGTGGATGGACCTGCGCCGCATGCTCCGGGAGAAGACGGCCGAGGCGGAGCTGGAGCTGTGGCGGGTGATCGTACACCAGGTAAAGCTGAACGTGTCGCCCGGCACGTCGTTCCACTGCCGCGAGCCCGGGTGGTTCCGCGTCTGCCACGCCAACATGGACGACGAGACCATGGAGGTCGCGCTCGGCCGGATCCACGACTTCGTGCGCCAGCACCAGCAGCGCAGGGTCAAGGCCGAGCGCTGGGCCGCCAATAGGCAGCTCCGCCTCAGCCTGCCGCACCACCACCACCTCAGCCCAGCCCATCTCTCCAGTCCATTGGCGCTCCTGTCGCCGCAGTCCCCGATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTGCTCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTTCATAACCATTTTTTTCTCGATCGCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTGATCGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGTAGAGACGTGCGTTAGTGCGTACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGTAGCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCGATTCTTTTGTGTATGGTTTGGTTAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTCTTGTAAACTGTAAAGTGTAAACATGTTACACTTACAATAAGGCTTAGGATTGAAT                                                                          ]
[+] EMBL C27145               [     AATCAATCATCGAGCNAGCTGAGCTAG TATAGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCC  TTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTNTNCGGCTGCTCGCGTTCCAGCCAGGGTCCGGGCTTCGGATATCCTCGGAGTCCGACACCANATCAATNGCGTACCAGGGCATCGACCTTCTCTTCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL D43388               [                                                               TGTCCGATCATCC  TTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCNTTCCAGNCAGGGTCCGGGCTTCGGATATCCTCGGAGTCCGACACCAAATCAATGGCGTACCAGGGCATCGACCTTCTC TCGACGAAAGCCGCANG NTTGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTACGACACGAACCCGTTNGACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSACCAS5             [                                                                                                                                                                                                                                                                                                                                                                                              GACCTGATCGA GAAT GAGCAAG ACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTTCAGGACTATCATGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACGCTCGCCT TCTGCCTCGCC AACCC CGGCGAGGC CTTC CTC GTGCCCAC GCCATACTACCCAGCTTTCGACC GCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGC CCTCGTGTCGGC GTACGAC GGC GCACGGAGGCAGGGCATCTC C GTCAAGGGGATC CTCATCACCAACCCGTCCAACCCGCTC GGCACCATCACC GACC GCGACACGC TGGCCATGCTC GCCACCTTCGCCACCGAGCACCGCGTCCACCTC GTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCC GGAGTACGTGAGCATCGCCGAGGTCATCGAGC GCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTACAGCCTCTCTAAGGACATCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAACGAC GCCGTCGTGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BM422163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aGCTCGCCTGTCTGCCTCGCCAAACCCGCGGCGAGGCACTTCACTCAGTGCCCACAGCCATACTACCCAGCTTTCGACCAGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCT CCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGCACCTCGTGTCGGCAGTACGACAGGCAGCACGGAGGCAGGGCATCTCACAGTCAAGGGGATCACTCATCACCAACCCGTCCAACCCGCTCAGGCACCATCACCAGACCAGCGACACGCATGGCCATGCTCAGCCACCTTCGCCACCGAGCACCGCGTCCACCTCNGTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCCAGGAGTACGTGAGCATCGCCGAGGTCATCGAGCNGCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTACAGCCTCTCTAAGGACTTC GCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAACGACNGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU092777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGC CCTCGTGTCGGC GTACGAC GGC GCACGGAGGCAGGGCATCTC C GTCAAGGGGATC NTCATCACCAACCCGTCCAACCCGCTC GGCACCATCACC GACC GCGACACGC TGGCCATGCTC GCCA CTTCGCCACCGAGCACCGCGTCCANAT  GTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCC GGAGTACGTGAGCATCGCCGAGGTCATCGAGC GCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTACAGCCTCTCCAAGGACTTCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB624342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAACGTGTCGCCCGGCACGTCGTTCCACTGCCGCGAGCCCGGGTGGTTCCGCGTCTGCCACGCCAACATGGACGACGAGACCATGGAGGTCGCGCTCGGCCGGATCCACGACTTCGTGCGCCAGCACCAGCAGCGCAGGGTCAAGGCCGAGCGCTGGGCCGCCAATAGGCAGCTCCGCCTCAGCCTGCCGCACCACCACCACCTCAGCCCAGCCCATCTCTCCAGCCCATTGGCGCTCCTGTCGCCGCAGTCCCCGATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTGCTCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTTCATAACCATTTTTTTCTCGATCGCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTGATCGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGTAGAGACGTGCGTTAGTGCGTACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGTAGCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCGATTCTTTTGTGTATGGTTTGGTTAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTCTTGTAAACTGTAAAGTGTAAACACGTTACACTTACAATAAGGCTTAGGATTGAATCGATCCGGATATATTGAATCTGTATAGCAGGTCTTCAACGTGCATCTTGCATGTGGACTTGTTCATACGAATTT]


>consensus_11755#0 AGCTCAATCAATCATCGAGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTG TCTGTCCGATCATCCTTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCT AGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGGGCTTCGG ATATCCTCGGAGTCCGACACCAAATCAATGGCGTACCAGGGCATCGACCTTCTCTCGACG AAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTAC GACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGCC GAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATCC ATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCAC GGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAG GCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACG CTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCGTGCCCACGCCATACTACCCA GCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCAC AGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGTCGGCGTACGACGGCGCACGG AGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACCCGTCCAACCCGCTCGGCACC ATCACCGACCGCGACACGCTGGCCATGCTCGCCACCTTCGCCACCGAGCACCGCGTCCAC CTCGTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCCGGAGTACGTGAGCATC GCCGAGGTCATCGAGCGCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTAC AGCCTCTCCAAGGACTTCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAAC GACGCCGTCGTGGCGGCCGCGCGCAGGATGTCCAGCTTCGGGCTCGTCTCGTCGCAGACG CAGTACTTCCTCGCCAGGATGCTCTCGGACGAGGAGTTCATCGGCCGCTTCCTCCAGGAG AGCAAGTGTCGGCTGGTGGCGCGGCACGAGCGGTTCACCTCTGGCCTCCGCGAGGTCGGG ATCGGCTGCCTGCGCGGCAACGCCGGGCTGTTCTCGTGGATGGACCTGCGCCGCATGCTC CGGGAGAAGACGGCCGAGGCGGAGCTGGAGCTGTGGCGGGTGATCGTACACCAGGTAAAG CTGAACGTGTCGCCCGGCACGTCGTTCCACTGCCGCGAGCCCGGGTGGTTCCGCGTCTGC CACGCCAACATGGACGACGAGACCATGGAGGTCGCGCTCGGCCGGATCCACGACTTCGTG CGCCAGCACCAGCAGCGCAGGGTCAAGGCCGAGCGCTGGGCCGCCAATAGGCAGCTCCGC CTCAGCCTGCCGCACCACCACCACCTCAGCCCAGCCCATCTCTCCAGTCCATTGGCGCTC CTGTCGCCGCAGTCCCCGATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTGC TCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTTCATAACCATTTTTTTCTCGATC GCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTGAT CGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGTA GAGACGTGCGTTAGTGCGTACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGTA GCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCGATTCTTTTGTGTATGGTTTGGT TAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTCTT GTAAACTGTAAAGTGTAAACATGTTACACTTACAATAAGGCTTAGGATTGAATCGATCCG GATATATTGAATCTGTATAGCAGGTCTTCAACGTGCATCTTGCATGTGGACTTGTTCATA CGAATTT



consensusID : consensus_11755#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence
                              [AGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCCTTTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGACACCAAATCAATGGCGTGCCAGGGCATCGACCTTCTCTCGACGAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTACGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGCCGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACGCTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCGTGCCCACGCCATACTACCCAGCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGTCGGCGTACGACGGCGCACGGAGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACCCGTC]

[+] EMBL CB624341             [AGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCCTTTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGACACCAAATCAATGGCGTGCCAGGGCATCGACCTTCTCTCGACGAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTACGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGCCGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGACGCTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCGTGCCCACGCCATACTACCCAGCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGTCGGCGTACGACGGCGCACGGAGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACCCGTC]


>consensus_11755#1 AGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTGTCTGTCCGATCATCCTT TTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGCTAGGCAGGTAGAGTAGC TACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGACACCAAATCAATGGCGTGCCAGG GCATCGACCTTCTCTCGACGAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACT TCGACGGGTGGAAGGCCTACGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTG TCATCCAGATGGGTCTCGCCGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCA AGAACCACCCCGAGGCATCCATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCG CCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGG GGCAGGTGAGGGGAGGCAAGGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCG CCACCGGCGCCCAGGAGACGCTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCG TGCCCACGCCATACTACCCAGCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGC TGCTGCCGATCGAGTGCCACAGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGT CGGCGTACGACGGCGCACGGAGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACC CGTC



consensusID : consensus_11755#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence
                              [NANCNGNTGGCTGAGNAACGGTGCTGNGNANCGGNTNGTGGCGGACGNTANGNGGNAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGCGTCTCGAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCAGTTTATGGGGCAGGTNAGGGGAGGCAAGGCAACGTTTNACCCCGACCGTGTCGTCATGAGCGGCGGCGCANCGCCA]

[+] EMBL AU063197             [NANCNGNTGGCTGAGNAACGGTGCTGNGNANCGGNTNGTGGCGGACGNTANGNGGNAGCAAGAACCACCCCGAGGCATCCATTTGCACACCGGAGGCGTCTCGAGTTCAAGAGGATCGCCAATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCAGTTTATGGGGCAGGTNAGGGGAGGCAAGGCAACGTTTNACCCCGACCGTGTCGTCATGAGCGGCGGCGCANCGCCA]


>consensus_11755#2 NANCNGNTGGCTGAGNAACGGTGCTGNGNANCGGNTNGTGGCGGACGNTANGNGGNAGCA AGAACCACCCCGAGGCATCCATTTGCACACCGGAGGCGTCTCGAGTTCAAGAGGATCGCC AATTTCCAGGATTACCACGGCCTCCCGGAGTTCAGAAAGGCGATGGCCAGTTTATGGGGC AGGTNAGGGGAGGCAAGGCAACGTTTNACCCCGACCGTGTCGTCATGAGCGGCGGCGCAN CGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11755#0      AGCTCAATCAATCATCGAGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTG 60
consensus_11755#1      -----------------AGCTAGCTGAGCTAGCTAAGTGCCATATTGCACGTACTCGTTG 43
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      TCTGTCCGATCATCCTTTTTTTTTT-CTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGC 119
consensus_11755#1      TCTGTCCGATCATCCTTTTTTTTTTTCTTGTGGGGGTCTGTCCGATCATCCTTGCGTGGC 103
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      TAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCGGGCTTCG 179
consensus_11755#1      TAGGCAGGTAGAGTAGCTACCTGCTCGGCTGCTCGCGTTCCAGCCAGGGTCCG------- 156
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GATATCCTCGGAGTCCGACACCAAATCAATGGCGTACCAGGGCATCGACCTTCTCTCGAC 239
consensus_11755#1      -----------------ACACCAAATCAATGGCGTGCCAGGGCATCGACCTTCTCTCGAC 199
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTA 299
consensus_11755#1      GAAAGCCGCAGGCGATGACCACGGCGAGAATTCATCGTACTTCGACGGGTGGAAGGCCTA 259
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGC 359
consensus_11755#1      CGACACGAACCCGTTCGACCTGCGGCACAATCGCGGGGGTGTCATCCAGATGGGTCTCGC 319
consensus_11755#2      ---------------------------------------NANCNGNTGGCTGAGNAACGG 21
                                                                 *     * ** *   ** 

consensus_11755#0      CGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATC 419
consensus_11755#1      CGAGAACCAGCTTTCTCTGGACCTGATCGAGGAATGGAGCAAGAACCACCCCGAGGCATC 379
consensus_11755#2      TGCTGNGNANCGGNTNGTGG--CGGACGNTANGNGGNAGCAAGAACCACCCCGAGGCATC 79
                        *      * *      ***  * **         * ***********************

consensus_11755#0      CATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCA 479
consensus_11755#1      CATTTGCACACCGGAGGGCGTCTCGCAGTTCAAGAGGATCGCCAATTTCCAGGATTACCA 439
consensus_11755#2      CATTTGCACACCGGAGG-CGTCTCG-AGTTCAAGAGGATCGCCAATTTCCAGGATTACCA 137
                       ***************** ******* **********************************

consensus_11755#0      CGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAA 539
consensus_11755#1      CGGCCTCCCGGAGTTCAGAAAGGCGATGGCCCAGTTTATGGGGCAGGTGAGGGGAGGCAA 499
consensus_11755#2      CGGCCTCCCGGAGTTCAGAAAGGCGATGGCC-AGTTTATGGGGCAGGTNAGGGGAGGCAA 196
                       ******************************* **************** ***********

consensus_11755#0      GGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGAC 599
consensus_11755#1      GGCAACGTTTGACCCCGACCGTGTCGTCATGAGCGGCGGCGCCACCGGCGCCCAGGAGAC 559
consensus_11755#2      GGCAACGTTTNACCCCGACCGTGTCGTCATGAGCGGCGGCGC-ANCGCCA---------- 245
                       ********** ******************************* * ** *           

consensus_11755#0      GCTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCGTGCCCACGCCATACTACCC 659
consensus_11755#1      GCTCGCCTTCTGCCTCGCCAACCCCGGCGAGGCCTTCCTCGTGCCCACGCCATACTACCC 619
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      AGCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCA 719
consensus_11755#1      AGCTTTCGACCGCGACTGTTGCTGGAGGTCAGGAATAAAGCTGCTGCCGATCGAGTGCCA 679
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CAGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGTCGGCGTACGACGGCGCACG 779
consensus_11755#1      CAGCTTCAACGACTTCAGGCTCACCAAGGAGGCCCTCGTGTCGGCGTACGACGGCGCACG 739
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GAGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACCCGTCCAACCCGCTCGGCAC 839
consensus_11755#1      GAGGCAGGGCATCTCCGTCAAGGGGATCCTCATCACCAACCCGTC--------------- 784
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CATCACCGACCGCGACACGCTGGCCATGCTCGCCACCTTCGCCACCGAGCACCGCGTCCA 899
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CCTCGTCTGCGACGAGATCTACGCGGGGTCGGTGTTCGCCACGCCGGAGTACGTGAGCAT 959
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CGCCGAGGTCATCGAGCGCGACGTGCCGTGGTGCAACAGGGACCTGATCCACGTCGTGTA 1019
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CAGCCTCTCCAAGGACTTCGGCCTCCCCGGCTTCCGCGTCGGCATCATCTACTCGTACAA 1079
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CGACGCCGTCGTGGCGGCCGCGCGCAGGATGTCCAGCTTCGGGCTCGTCTCGTCGCAGAC 1139
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GCAGTACTTCCTCGCCAGGATGCTCTCGGACGAGGAGTTCATCGGCCGCTTCCTCCAGGA 1199
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GAGCAAGTGTCGGCTGGTGGCGCGGCACGAGCGGTTCACCTCTGGCCTCCGCGAGGTCGG 1259
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GATCGGCTGCCTGCGCGGCAACGCCGGGCTGTTCTCGTGGATGGACCTGCGCCGCATGCT 1319
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CCGGGAGAAGACGGCCGAGGCGGAGCTGGAGCTGTGGCGGGTGATCGTACACCAGGTAAA 1379
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GCTGAACGTGTCGCCCGGCACGTCGTTCCACTGCCGCGAGCCCGGGTGGTTCCGCGTCTG 1439
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CCACGCCAACATGGACGACGAGACCATGGAGGTCGCGCTCGGCCGGATCCACGACTTCGT 1499
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GCGCCAGCACCAGCAGCGCAGGGTCAAGGCCGAGCGCTGGGCCGCCAATAGGCAGCTCCG 1559
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CCTCAGCCTGCCGCACCACCACCACCTCAGCCCAGCCCATCTCTCCAGTCCATTGGCGCT 1619
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CCTGTCGCCGCAGTCCCCGATGGTTCGCGCCACCAGCTGATTAAGCCAGCAGTGCACTTG 1679
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CTCTGCTAATGCTGCGCCTTACTACGTCGACTACATTTTCATAACCATTTTTTTCTCGAT 1739
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      CGCATCGTCGCACGGCGGCACGGGGCCGTATGGTGTTCTTTCCGATGCAGGTACGTGTGA 1799
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      TCGTTTGTGGAAACTAGGCTACACGTGCACGGCACCGTACATGTAGCTTGGCTTTTTTGT 1859
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      AGAGACGTGCGTTAGTGCGTACAGGCGTCGCCGCGTCGGGTGTACATAGGTAATTTTAGT 1919
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      AGCGTGTGTAACAGGGGTATCGGAGATTCGGAGTCCTCGATTCTTTTGTGTATGGTTTGG 1979
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      TTAATTCAGATGGCAAGGAATAATGATCGGATTAAGGCGTTAAGCCCCCCGATCGGCTCT 2039
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      TGTAAACTGTAAAGTGTAAACATGTTACACTTACAATAAGGCTTAGGATTGAATCGATCC 2099
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      GGATATATTGAATCTGTATAGCAGGTCTTCAACGTGCATCTTGCATGTGGACTTGTTCAT 2159
consensus_11755#1      ------------------------------------------------------------
consensus_11755#2      ------------------------------------------------------------
                                                                                   

consensus_11755#0      ACGAATTT 2167
consensus_11755#1      --------
consensus_11755#2      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)