|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1175 fasta sequence
[AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC-TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC-TGCTGGATGC-TGAGGATAAAACTAAGGACATCAAA-TTGTTTA-TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGC]
[+] EMBL AK102473 [AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC TGCTGGATGC TGAGGATAAAACTAAGGACATCAAA TTGTTTA TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGC]
[+] EMBL OSS11651A [ GGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAGCTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTNGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTCTTTCCTCGGCTTCCCGGTGGATGATATGAGTTCTGATCTTATCATCAGCCAACTCTTNCTTGCTGGATGCTTGAGGATAAAACTAAGGACATCAAATTTGTTTATTTAACTTACCTGGAGGCTTCA ]
[+] EMBL CB653406 [ TCATCCTCCTCGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAACGCGGCGCCAAGAGCTACGGTCCGCGCATCCGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTCCCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCACCAACATGCTCCTTCGCCAGCGCATCGTC TTCCTCGGCTCCCCGGTGGATGATATGAGTGCTGATCTTATCATCAGCCAACTCTTGC TGCTGGATGC TGAGGATAAAACTAAGGACATCAAA TTGTTTA TTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCATGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTGCATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACACAATACTGTCAAGAATCAC ]
[+] EMBL AF450251 [ cactaaaTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGGTCTTGCCAATTGCCATAC ]
consensusID : consensus_11756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 867 fasta sequence
[GAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCAAGTTATATTAAAAAAAAGCCTAGATTGTTCTCTTATGTTATGTATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN]
[-] EMBL CB653407 [GAAGAGATTTTGCATGCCTAATGCGAGAATTATGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATACGAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTT ]
[-] EMBL CA762916 [ gacaaggggGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAGTGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCCAGTAGCTGTAGCGCTCCTTAATTCTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTAaaaaaaaa ]
[+] EMBL CB000409 [ TTTGGCAGGAGCTGTCCCTTCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCCCCAGAGGAGAAGCTTATTCATTATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTGCCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTTTTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCAAGTTATATTAAAAAAAA ]
[+] EMBL AU095919 [ TAGCTTGGCATGATATGTTAGCTTACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGNATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAAAGAGAGAAAACCCAGCTAGTTATATTACAACACTGCCTAGATTGTTCTCTTATGTTATGTATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN]
[-] EMBL D42267 [ TTCCAATGCAATAACTCATGGCAATTTCCAGTGTACATTGCTTTCATTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11756#0 AAGAAATGGAGGCAGCGGCAGCCATGGCGGCCCTCCCCGCTTCTCCCTGCTCATCCTCCT 60
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CGTCCCCGTCGTCCCTTTTCCTCGCTCCCAACCCGTGCTGCTGGAAGGCGGCGCCAAGAG 120
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CTACGGTCCGCGCATCGGCGTCGGCGGCACGGCGGACGCTCTCCTCCGCGTGGGAACTTC 180
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CCGGGCCGTCGGCGGCTCGGCCTGCGGCAAGGAAGCCGCGCCTCGAGGAGCTGGACACCA 240
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CCAACATGCTCCTTCGCCAGCGCATCGTCTTCCTCGGCTCCCCGGTGGATGATATGAGTG 300
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CTGATCTTATCATCAGCCAACTCTTGCTGCTGGATGCTGAGGATAAAACTAAGGACATCA 360
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 AATTGTTTATTAACTCACCTGGAGGCTCCATAACAGCAGGAATGGGAGTTTATGATGCCA 420
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 TGAAATTTTGCAAGGCTGATATATCAACTGTCTGCTTTGGACTGGCGGCTTCCATGGGTG 480
consensus_11756#1 ------------------------------------------------------------
consensus_11756#0 CATTTTTGCTAGCTGCTGGGACAAAGGGGAAGAGATTTTGCATGCCTAATGCGAGAATTA 540
consensus_11756#1 ----------------------------GAAGAGATTTTGCATGCCTAATGCGAGAATTA 32
********************************
consensus_11756#0 TGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATAC 600
consensus_11756#1 TGATCCATCAACCATCAGGGGGTGCTGGTGGGAAGGTCACAGAGATGGGATTACAGATAC 92
************************************************************
consensus_11756#0 GAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGC 660
consensus_11756#1 GAGAGATGATGTATGAGAAGATAAAGATCAACAAAATACTGTCAAGAATCACCGGGAAGC 152
************************************************************
consensus_11756#0 CTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCA 720
consensus_11756#1 CTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCA 212
************************************************************
consensus_11756#0 AGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTT 780
consensus_11756#1 AGGATTATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTT 272
************************************************************
consensus_11756#0 TGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGAC 840
consensus_11756#1 TGGCAGGAGCTGTGCCACCTCCAAAATCGCGTGTGTGGTACTTATGGAATGCTTCAGGAC 332
************************************************************
consensus_11756#0 CAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATG 900
consensus_11756#1 CAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTATTCAAAATGGTAATG 392
************************************************************
consensus_11756#0 GCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGT------- 953
consensus_11756#1 GCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTACGTCTG 452
*****************************************************
consensus_11756#0 ------------------------------------------------------------
consensus_11756#1 CCAGGTCACACAGTTACCATTGTTCTACGGTCGAACATAGCTTGGCATGATATGTTAGCT 512
consensus_11756#0 ----------------------------------TATTACACATTGTGAAGCTTAATGTA 979
consensus_11756#1 TACAATGCACAACTTTGGGTTCCCTTCATCAGGTTATTACACATTGTGAAGCTTAATGTA 572
**************************
consensus_11756#0 GTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACT 1039
consensus_11756#1 GTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACT 632
************************************************************
consensus_11756#0 GCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCA 1099
consensus_11756#1 GCAAGAACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCA 692
************************************************************
consensus_11756#0 TTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAA 1159
consensus_11756#1 TTCTGCCATTATGTTGGCTGAATTATTATTGTTCTTGCCAATTGCCATACTTAAAAAGAA 752
************************************************************
consensus_11756#0 AGAGAGAAAACCCAGC-------------------------------------------- 1175
consensus_11756#1 AGAGAGAAAACCCAGCAAGTTATATTAAAAAAAAGCCTAGATTGTTCTCTTATGTTATGT 812
****************
consensus_11756#0 -------------------------------------------------------
consensus_11756#1 ATATGCACTCTATAAACAAATCGATATGGTGGTTGTTTCAGCTTTCAAANTTNNN 867
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||