Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11757 cluster # 11757       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11757#0 length = 1775 sequences # 8  
consensus_11757#1 length = 590 sequences # 1  

consensusID : consensus_11757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1775
fasta sequence
                              [TGCTCAGGCTCGGGTTCGGCTCTCGAAACCTCGAGCTGCTCGCTGAGCCTCGACCTTTTTTTTTGACAGCCCTACACCGATCCCTGCATACCAAAGTCGGCGGCTACACCTGACTCATCGATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCTCCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGAAGCGGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGCTCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCATCGGCGCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTCCATCCCTGAAGCTCAAGCCTG-TCTCCAAGGTAACAAAGGGA-GGTTATCTTGAGGTTGGGGTCCAAACTTA-TGGA-GGTGGC-TTGTGGTACACAT-GGTTCGACCGTGATCTTACTGTTGCTGGTAGGGTGATTGTAAGGGAGAAGAAGGATGGTGCAGTGTCGTATGCGCATAAGCTTGTAAGAGTGCAAGAGCCAGTCATGAGAATCCCCACTTTGGCTATTCACCTTGACAGGAATATCTCCTCAGAAGGTCTCAGGATTAACAACCAGAATCATCTTGTCCCTGTGCTGGCCACATCTGTTAAGAATGAAATGCAGAAATTAGTGGCAGAAAATGGTTCAGAGTCATCTGAGAGTAAGAACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTGATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATACCCAGCCAAGTACTGTAGCAGGTGCCATGAAAGAATTCATCTTTTCAGGAAGGCTTGACAATCTTTGCATGTCATTTTGTTCGTTGAAGGCCCTAATAGAATCGACTTCTTCTGAAGAATCTCTTGCGCATGAATCTGGTGTGAGAATGGTGGCTCTATTTGACCATGAGGAGGTTGGATCTGATTCGGCTCAGGGAGCTGGTTCTCCTGCCATGTT-AGATGCTTTG-TCAAGAAT-CACAGGGTCTTTTAACTCTTCAAATTCGAGGTTGCTAGAAAAGGCTATTCAAAGAAGCTTTCTAGTATCTGCAGATATGGCACATGCCTTACACCCCAATTATATGGACAAGCATGAGGAGAACCACCAGCCTAAATTGCATGGAGGACTCGTGATTAAACACAATGCTAACCAACGATATGCTACAAATGCTGTGACAGCATTTATTTTTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGTTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGGATATTGGAGCACCACAATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACGAACA-CTT-CAAGGCATATTTCGAAGAGTTCA-CTGAATTGGACAGCAAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAACAATAAATTGGGTTACATTATCTCGTCACAGGAATCTCATGGAGAATATATTTTCT-GCT-TAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK071207             [TGCTCAGGCTCGGGTTCGGCTCTCGAAACCTCGAGCTGCTCGCTGAGCCTCGACCTTTTTTTTTGACAGCCCTACACCGATCCCTGCATACCAAAGTCGGCGGCTACACCTGACTCATCGATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCTCCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGAAGCGGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGCTCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCATCGGCGCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTCCATCCCTGAAGCTCAAGCCTG TCTCCAAGGTAACAAAGGGA GGTTATCTTGAGGTTGGGGTCCAAACTTA TGGA GGTGGC TTGTGGTACACAT GGTTCGACCGTGATCTTACTGTTGCTGGTAGGGTGATTGTAAGGGAGAAGAAGGATGGTGCAGTGTCGTATGCGCATAAGCTTGTAAGAGTGCAAGAGCCAGTCATGAGAATCCCCACTTTGGCTATTCACCTTGACAGGAATATCTCCTCAGAAGGTCTCAGGATTAACAACCAGAATCATCTTGTCCCTGTGCTGGCCACATCTGTTAAGAATGAAATGCAGAAATTAGTGGCAGAAAATGGTTCAGAGTCATCTGAGAGTAAGAACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTGATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATACCCAGCCAAGTACTGTAGCAGGTGCCATGAAAGAATTCATCTTTTCAGGAAGGCTTGACAATCTTTGCATGTCATTTTGTTCGTTGAAGGCCCTAATAGAATCGACTTCTTCTGAAGAATCTCTTGCGCATGAATCTGGTGTGAGAATGGTGGCTCTATTTGACCATGAGGAGGTTGGATCTGATTCGGCTCAGGGAGCTGGTTCTCCTGCCATGTT AGATGCTTTG TCAAGAAT CACAGGGTCTTTTAACTCTTCAAATTCGAGGTTGCTAGAAAAGGCTATTCAAAGAAGCTTTCTAGTATCTGCAGATATGGCACATGCCTTACACCCCAATTATATGGACAAGCATGAGGAGAACCACCAGCCTAAATTGCATGGAGGACTCGTGATTAAACACAATGCTAACCAACGATATGCTACAAATGCTGTGACAGCATTTATTTTTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGCTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGGATATTGGAGCACCACAATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACGAACA CTT CAAGGCATATTTCGAAGAGTTCA CTGAATTGGACAGCAAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAACAATAAATTGGGTTACATTATCTCGTCACAGGAATCTCATGGAGAATATATTT                                                                 ]
[+] EMBL AK103925             [                                                                                                TCGGCGGCTACACCTGACTCATCGATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCTCCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGAAGCGGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGCTCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCATCGGCGCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTCCATCCCTGAAGCTCAAGCCTG TCTCCAAGGTAACAAAGGGA GGTTATCTTGAGGTTGGGGTCCAAACTTA TGGA GGTGGC TTGTGGTACACAT GGTTCGACCGTGATCTTACTGTTGCTGGTAGGGTGATTGTAAGGGAGAAGAAGGATGGTGCAGTGTCGTATGCGCATAAGCTTGTAAGAGTGCAAGAGCCAGTCATGAGAATCCCCACTTTGGCTATTCACCTTGACAGGAATATCTCCTCAGAAGGTCTCAAGATTAACAACCAGAATCATCTTGTCCCTGTGCTGGCCACATCTGTTAAGAATGAAATGCAGAAATTAGTGGCAGAAAATGGTTCAGAGTCATCTGAGAGTAAGAACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTGATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATACCCAGCCAAGTACTGTAGCAGGTGCCATGAAAGAATTCATCTTTTCAGGAAGGCTTGACAATCTTTGCATGTCATTTTGTTCGTTGAAGGCCCTAATAGAATCGACTTCTTCTGAAGAATCTCTTGCGCATGAATCTGGTGTGAGAATGGTGGCTCTATTTGACCATGAGGAGGTTGGATCTGATTCGGCTCAGGGAGCTGGTTCTCCTGCCATGTT AGATGCTTTG TCAAGAAT CACAGGGTCTTTTAACTCTTCAAATTCGAGGTTGCTAGAAAAGGCTATTCAAAGAAGCTTTCTAGTATCTGCAGATATGGCACATGCCTTACACCCCAATTATATGGACAAGCATGAGGAGAACCACCAGCCTAAATTGCATGGAGGACTCGTGATTAAACACAATGCTAACCAACGATATGCTACAAATGCTGTGGCAGCATTTATTTTTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGTTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGGATATTGGAGCACCACAATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACGAACA CTT CAAGGCATATTTCGAAGAGTTCA CTGAATTGGACAGCAAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAACAATAAATTGGGTTACATTATCTCGTCACAGGAATCTCATGGAGAATAT                                                                     ]
[+] EMBL OSR22192A            [                                                                                                                ACTCATCGATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCTCCGACCTCGTCGACTTCCTCAACGCCTCNNCCACCGCCTTCCACGCCGTCGATGAGGNGAAG GGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGCTCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCATCGG GCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTCCATCCCTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU062473             [                                                                                                                                                                            CGTNGTCTCCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGAAG GGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGTGAGGAGTNGGCGGGGCTCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTAGCCTTNGCCATCGG GCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGNATACTGACAGTCCATCCCTGAAGCTCAAG CTGTTGTNCAAGGTAACAAAGGGAGGGTTATCTTGAGNTTTGGGTCCAAACTTATTGNAGGGTGGCTTTGTGGTA AAATGGGTTCGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AA751344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAGTCATCTGAGAGTAAGAACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTGATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATA CCAGCCAAGTACTGTAGCAGGTGCCATGAAAGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI804068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTCC CCCATGTTAAGATGCTTTGTTCAAGAATCCACA GGTCTTTTAACTCTTCAAATTCGA GTTGCTAGAAAA GCTATTCAAAGAACCTTTCTAGTATCTCCAGATATGGCACATCCCTTACACCCC ATTATATGGACAAGCATGAGGAGAACCACCAGCCTAAATTGCATGGAGGACTCGTGATTAAACACAATGCTAACCAACGATATGCTACAAATGCTGTGACAGCATTTATTTTTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGTTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGGATATTGGAGCACCAC ATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACGAACACCTT CAAGGCATATTTCGAAGAGTTCACCTGAATTGGACAGCCAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAAC ATAAATTGGGTTACATTATCTCGTCAaaaaaaaaa                                                                                 ]
[+] EMBL BI802561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTGCTAGAAA  GCTATTC AAGAAGCTTT TAGTATCTCCAGATATGCCACATGCC TACACCCCAATTATATGGACAAGCATGA GAGAACCACCAGCCTAAATTGCATGGAGGACTCGTGATTAAACACAATGCTAACC ACGATATGCTAC AATGCTGTGACAGCATTTATTTTTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGTTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGGATATTGGAGCACCAC ATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACGAACA CTTCCAAGGCATATTTCGAAGAGTTCA CTGAATTGGACA C AAGTTAAAGTAGATTGCTAAGATGAATTAGTGACCATACTGGATCA CCGACT GT GTGTTGC TTGACATATCCTGTACTG TGC  AATAAATG AC AT AATTGGG TAC  TATCTC TCAC  GAATCTC T GAG   ATAATTTCT GCT TAATTTTAAA                                               ]
[+] EMBL AU095462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTCA CTGAATTGGCCAGCAAAGTTAAAGTAGATTGCTAAGNTGAAGTAGTGACCATACTGGATCANCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGNACAATAAATTGGGTTACATTATCTCGTCACAGGAATNTCNTGGAGAATATATTTTCTGGCTGTGATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11757#0 TGCTCAGGCTCGGGTTCGGCTCTCGAAACCTCGAGCTGCTCGCTGAGCCTCGACCTTTTT TTTTGACAGCCCTACACCGATCCCTGCATACCAAAGTCGGCGGCTACACCTGACTCATCG ATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCT CCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGA AGCGGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGC TCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCA TCGGCGCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTC CATCCCTGAAGCTCAAGCCTGTCTCCAAGGTAACAAAGGGAGGTTATCTTGAGGTTGGGG TCCAAACTTATGGAGGTGGCTTGTGGTACACATGGTTCGACCGTGATCTTACTGTTGCTG GTAGGGTGATTGTAAGGGAGAAGAAGGATGGTGCAGTGTCGTATGCGCATAAGCTTGTAA GAGTGCAAGAGCCAGTCATGAGAATCCCCACTTTGGCTATTCACCTTGACAGGAATATCT CCTCAGAAGGTCTCAGGATTAACAACCAGAATCATCTTGTCCCTGTGCTGGCCACATCTG TTAAGAATGAAATGCAGAAATTAGTGGCAGAAAATGGTTCAGAGTCATCTGAGAGTAAGA ACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTG ATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATACCCAGCCAAGTACTGTAGCAGGTG CCATGAAAGAATTCATCTTTTCAGGAAGGCTTGACAATCTTTGCATGTCATTTTGTTCGT TGAAGGCCCTAATAGAATCGACTTCTTCTGAAGAATCTCTTGCGCATGAATCTGGTGTGA GAATGGTGGCTCTATTTGACCATGAGGAGGTTGGATCTGATTCGGCTCAGGGAGCTGGTT CTCCTGCCATGTTAGATGCTTTGTCAAGAATCACAGGGTCTTTTAACTCTTCAAATTCGA GGTTGCTAGAAAAGGCTATTCAAAGAAGCTTTCTAGTATCTGCAGATATGGCACATGCCT TACACCCCAATTATATGGACAAGCATGAGGAGAACCACCAGCCTAAATTGCATGGAGGAC TCGTGATTAAACACAATGCTAACCAACGATATGCTACAAATGCTGTGACAGCATTTATTT TTCGGGAAATTGCTGAGAGGCACCATCTACCTATACAGGATTTTGTTGTTCGGAACGACA TGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTACTGTGG ATATTGGAGCACCACAATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACA TCAAGCACTCGTACGAACACTTCAAGGCATATTTCGAAGAGTTCACTGAATTGGACAGCA AAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTG TTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAACAATAAATTGGGTTACATTAT CTCGTCACAGGAATCTCATGGAGAATATATTTTCTGCTTAATTTTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [GTTGCTAGAAAAGGCTATTCAAAGAACCTTTGCTAGTATCTGCAGATATGGGCACATGCCCTTACACCCCCATTATGATGGACAAGCATGGAGGAGACCCCCCACGGCCTGAAATTGGCATGGGAGGGACTGTGATTAAACCACAATGGCTAAACCATACGATGATGCTACAAAATGGCTGTGGACAGCATGTTGATTTGTTGCGGGAAATTGCTGGAGAGGCACCATGCTACCTGATACAGGATTTTGGTTGGTTGCGGAACAAACATGGGGTTGTGGGTTCAACCATGCGGCCCAATGACTGAGCTGAGTGGTGTTGGGTATTCGTACTGTGGATATTGGGAGCCCCCCATTGTCGATGGCACAGCATCAGGGAAATGGTGTGCCTGTCGATGGACATCAAGCACTGCGTACGAACACCTTGCAAGCCATATTTGCGAAGAGTTCCACCTGGAATTGGGACACCAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCACCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTCCAAAATAAATGAACAATAAATTTGGGTTAAAAAAAAAA]

[+] EMBL BI801742             [GTTGCTAGAAAAGGCTATTCAAAGAACCTTTGCTAGTATCTGCAGATATGGGCACATGCCCTTACACCCCCATTATGATGGACAAGCATGGAGGAGACCCCCCACGGCCTGAAATTGGCATGGGAGGGACTGTGATTAAACCACAATGGCTAAACCATACGATGATGCTACAAAATGGCTGTGGACAGCATGTTGATTTGTTGCGGGAAATTGCTGGAGAGGCACCATGCTACCTGATACAGGATTTTGGTTGGTTGCGGAACAAACATGGGGTTGTGGGTTCAACCATGCGGCCCAATGACTGAGCTGAGTGGTGTTGGGTATTCGTACTGTGGATATTGGGAGCCCCCCATTGTCGATGGCACAGCATCAGGGAAATGGTGTGCCTGTCGATGGACATCAAGCACTGCGTACGAACACCTTGCAAGCCATATTTGCGAAGAGTTCCACCTGGAATTGGGACACCAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGACCATACTGGATCACCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTCCAAAATAAATGAACAATAAATTTGGGTTAAAAAAAAAA]


>consensus_11757#1 GTTGCTAGAAAAGGCTATTCAAAGAACCTTTGCTAGTATCTGCAGATATGGGCACATGCC CTTACACCCCCATTATGATGGACAAGCATGGAGGAGACCCCCCACGGCCTGAAATTGGCA TGGGAGGGACTGTGATTAAACCACAATGGCTAAACCATACGATGATGCTACAAAATGGCT GTGGACAGCATGTTGATTTGTTGCGGGAAATTGCTGGAGAGGCACCATGCTACCTGATAC AGGATTTTGGTTGGTTGCGGAACAAACATGGGGTTGTGGGTTCAACCATGCGGCCCAATG ACTGAGCTGAGTGGTGTTGGGTATTCGTACTGTGGATATTGGGAGCCCCCCATTGTCGAT GGCACAGCATCAGGGAAATGGTGTGCCTGTCGATGGACATCAAGCACTGCGTACGAACAC CTTGCAAGCCATATTTGCGAAGAGTTCCACCTGGAATTGGGACACCAAGTTAAAGTAGAT TGCTAAGATGAAGTAGTGACCATACTGGATCACCCGACTGGTGGTGTTGCTTTGACATAT CCTGTACTGTTCCAAAATAAATGAACAATAAATTTGGGTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11757#0      TGCTCAGGCTCGGGTTCGGCTCTCGAAACCTCGAGCTGCTCGCTGAGCCTCGACCTTTTT 60
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TTTTGACAGCCCTACACCGATCCCTGCATACCAAAGTCGGCGGCTACACCTGACTCATCG 120
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      ATCCACTACTGCCGCCGCCGCCCATGGCCTCCGCCGCCGTCGCCGTCGCCCCCGTCGTCT 180
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      CCGACCTCGTCGACTTCCTCAACGCCTCCCCCACCGCCTTCCACGCCGTCGATGAGGCGA 240
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      AGCGGCGGCTGAAGGCGGCGGGGTTCTCGCAGCTGTCGGAGCGGGAGGAGTGGGCGGGGC 300
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TCCAGCCCGGCCGCAAGTACTTCTTCACGCGCAACCACTCCACCATCGTCGCCTTCGCCA 360
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TCGGCGCCAAGTATGCTGCCGGCAATGGGTTTCACATAATCGGTGCGCATACTGACAGTC 420
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      CATCCCTGAAGCTCAAGCCTGTCTCCAAGGTAACAAAGGGAGGTTATCTTGAGGTTGGGG 480
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TCCAAACTTATGGAGGTGGCTTGTGGTACACATGGTTCGACCGTGATCTTACTGTTGCTG 540
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      GTAGGGTGATTGTAAGGGAGAAGAAGGATGGTGCAGTGTCGTATGCGCATAAGCTTGTAA 600
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      GAGTGCAAGAGCCAGTCATGAGAATCCCCACTTTGGCTATTCACCTTGACAGGAATATCT 660
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      CCTCAGAAGGTCTCAGGATTAACAACCAGAATCATCTTGTCCCTGTGCTGGCCACATCTG 720
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TTAAGAATGAAATGCAGAAATTAGTGGCAGAAAATGGTTCAGAGTCATCTGAGAGTAAGA 780
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      ACACCAAGCATCATCCACTATTATTGCAGTTGATTGCTAAAGAAGCGAACTGCAAGCCTG 840
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      ATGAGATATGTGACTTTGAGCTGCAGTTGTGCGATACCCAGCCAAGTACTGTAGCAGGTG 900
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      CCATGAAAGAATTCATCTTTTCAGGAAGGCTTGACAATCTTTGCATGTCATTTTGTTCGT 960
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      TGAAGGCCCTAATAGAATCGACTTCTTCTGAAGAATCTCTTGCGCATGAATCTGGTGTGA 1020
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      GAATGGTGGCTCTATTTGACCATGAGGAGGTTGGATCTGATTCGGCTCAGGGAGCTGGTT 1080
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      CTCCTGCCATGTTAGATGCTTTGTCAAGAATCACAGGGTCTTTTAACTCTTCAAATTCGA 1140
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      GGTTGCTAGAAAAGGCTATTCAAAGAAGCTTT-CTAGTATCTGCAGATATGG-CACATGC 1198
consensus_11757#1      -GTTGCTAGAAAAGGCTATTCAAAGAACCTTTGCTAGTATCTGCAGATATGGGCACATGC 59
                        ************************** **** ******************* *******

consensus_11757#0      C-TTACACCCCAATTAT-ATGGACAAGCATG-AGGAGAACCACCA--GCCTAAATT--GC 1251
consensus_11757#1      CCTTACACCCCCATTATGATGGACAAGCATGGAGGAGACCCCCCACGGCCTGAAATTGGC 119
                       * ********* ***** ************* ****** ** ***  **** ** *  **

consensus_11757#0      ATGG-AGGACTCGTGATTAAAC-ACAATGCT--AACCA-ACGAT-ATGCTACAAAT--GC 1303
consensus_11757#1      ATGGGAGGGACTGTGATTAAACCACAATGGCTAAACCATACGATGATGCTACAAAATGGC 179
                       **** ***    ********** ******    ***** ***** **********   **

consensus_11757#0      TGTG-ACAGCATTT--ATTTTT--CGGGAAATTGCTG-AGAGGCACCAT-CTACCT-ATA 1355
consensus_11757#1      TGTGGACAGCATGTTGATTTGTTGCGGGAAATTGCTGGAGAGGCACCATGCTACCTGATA 239
                       **** ******* *  **** *  ************* *********** ****** ***

consensus_11757#0      CAGGATTTTG-TTGTT--CGGAACGA-CATGGG-TTGTGG-TTCAACCAT-CGGCCCAAT 1408
consensus_11757#1      CAGGATTTTGGTTGGTTGCGGAACAAACATGGGGTTGTGGGTTCAACCATGCGGCCCAAT 299
                       ********** *** *  ****** * ****** ****** ********* *********

consensus_11757#0      -ACT-AGCT-AGTGGTGTTGG-TATTCGTACTGTGGATATTGGAGCACCACAATTGTCGA 1464
consensus_11757#1      GACTGAGCTGAGTGGTGTTGGGTATTCGTACTGTGGATATTGGGAGCCCCCCATTGTCGA 359
                        *** **** *********** *********************    ** * ********

consensus_11757#0      TG-CACAGCATCAGGGAAATG-TGTGC-TGTCGATG-ACATCAAGCACT-CGTACGAACA 1519
consensus_11757#1      TGGCACAGCATCAGGGAAATGGTGTGCCTGTCGATGGACATCAAGCACTGCGTACGAACA 419
                       ** ****************** ***** ******** ************ **********

consensus_11757#0      CTT--CAAGGCATATTT-CGAAGAGTTC-ACT--GAATTGGACAGCAAAGTTAAAGTAGA 1573
consensus_11757#1      CCTTGCAAGCCATATTTGCGAAGAGTTCCACCTGGAATTGGGACACCAAGTTAAAGTAGA 479
                       * *  **** ******* ********** **   *******    * *************

consensus_11757#0      TTGCTAAGATGAAGTAGTGACCATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATA 1633
consensus_11757#1      TTGCTAAGATGAAGTAGTGACCATACTGGATCACCCGACTGGTGGTGTTGCTTTGACATA 539
                       ********************************* **************************

consensus_11757#0      TCCTGTACTGTTGCAAAATAAATGAACAATAAATT-GGGTTACATTATCTCGTCACAGGA 1692
consensus_11757#1      TCCTGTACTGTTCCAAAATAAATGAACAATAAATTTGGGTTAAAAAAAAAA--------- 590
                       ************ ********************** ****** *  *             

consensus_11757#0      ATCTCATGGAGAATATATTTTCTGCTTAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA 1752
consensus_11757#1      ------------------------------------------------------------
                                                                                   

consensus_11757#0      AAAAAAAAAAAAAAAAAAAAAAA 1775
consensus_11757#1      -----------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)