These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1500 fasta sequence [CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCCTAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTTACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTATGGTCTCTTAGACAATACAA] [+] EMBL AK071569 [CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCCTAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTTACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTATGGTCTCTTAGACAATACAA] [+] EMBL AK070294 [ ATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAATGGAGGAGCCACCGTTTCGGCTGGTTGGGCGGCCACCCAACCTCGCCGGCGACGAACAGTGGATCACAGTAGCAGAAGCTGCTTACTTCGACCATCATATGGATCTACCAGAGGCTTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTGATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTCGACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCCGTCCGCCTCTTCCTCCCCAAGCTTCAGGAGCCCTCCAAGAAGCTCCCCGTCGTCGTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAACTACGTCAACTCCCTCGCCGCGGCGGCCGGTGTCCTCGTCGTGTCCGTCGACTACCGGCTCGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGCGGCCTCGGCGCAAGACGGATGGATCGCCGAGCACGGCGACACGGCTCGCCTCTTCGTCACCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCAGCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGGCGGGAGCAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTACGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGGCGGGCCGGTGCTGGAGGAGCTCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGGACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGGAGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAGCTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTG TTCACTCATCATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAAGGTGAAACTGAAATTGAT ] consensusID : consensus_11764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1244 fasta sequence [TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAAGACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCCAGGGGTTTATTAGCTGATTCAAGACGTACCTTATCATCTCTCCATTCGCCATCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTAGGGCTCGAATAATTTGGACTGATCATCCTTTCATGA] [-] EMBL AK073449 [TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAAGACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCCAGGGGTTTATTAGCTGATTCAAGACGTACCTTATCATCTCTCCATTCGCCATCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAA ] [+] EMBL AK067180 [ TCGAGCCCGCCGGAGGCCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTAGGGCTCGAATAATTTGGACTGATCATCCTTTCATGA] [+] EMBL CF569125 [ CCAAAACGCCTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGC CGGTTCTCGAGGGGGAGCCCCCGGCCG ] [+] EMBL CB683116 [ ggccccttCGACTTCTGCGGCAGCATCCACCAATTCGCCATGGCCTCCGAGACCGAGCCCGACGCCGTGGTGTTCTACGCTCCGGCGCACTTCCGCATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTCGACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCCGTGCGCCTCTACCTCCCCAAGATCCAAGAGCCATCCAAGAAGCTCCCCGTCCTCGTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACCCCTTCGCCGCCGCGGCCGGCGTCGTCGTGGTGTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGCGGCGTCAGCGCAAGATGGCTGGCTCGCGGAGCACGGCGACGTGTCCCGACTGTTCATCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCAACGGCGGGCCGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGGCGGGAGCACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTACGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGGCG ] [+] EMBL BU673413 [ TGGTGCTACGCGTG CCCGGCGCGT CGGCGGCGCGGACGA CCGAGGATGAACCCGCTTGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGCGTGCGAGAGGATGCTGGTGGCGGCAGGGCAGACCGACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCGGGACGGCGACATGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGGAGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTCCTGCCTGATTAAAAATTAGCTCCATCCGGATGCGCCCCGCGTTGAAGTCGTCGTAATGTATCGAACTTATGGCTCGAATAATTTGGACTGA ] consensusID : consensus_11764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1040 fasta sequence [AGTTGTGATAGCCATGGAACCCGACGCCGACGAGTTGGTGTTCGACAGCTCATACCTCCGCATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTCGACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTCGTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTCGTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAACTACCTCAACTCCGCCGCCGCCGCCGCCGGCGTCCTTGTGGTGTCCGTCGACTACCGCTTAGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGCGGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGACACGGCGCGCGTCTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGAACAAAGGACCGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGGCGGGAGCACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTTCGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGGACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAACTTCTCTTCTTCATCTGTGTATGCTTGCGGACTTGCAGCTGTATCTTGCTTGCCTGAGATTAATAAATCAATAAAATGTTATATATT] [+] EMBL AK108359 [AGTTGTGATAGCCATGGAACCCGACGCCGACGAGTTGGTGTTCGACAGCTCATACCTCCGCATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTCGACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTCGTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTCGTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAACTACCTCAACTCCGCCGCCGCCGCCGCCGGCGTCCTTGTGGTGTCCGTCGACTACCGCTTAGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGCGGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGACACGGCGCGCGTCTTCGTCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGAACAAAGGACCGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGGCGGGAGCACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTTCGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGGCGCGCCGGCGCTGGAGAAGCTCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGGACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCGGGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAACTTCTCTTCTTCATCTGTGTATGCTTGCGGACTTGCAGCTGTATCTTGCTTGCCTGAGATTAATAAATCAATAAAATGTTATATATT] consensusID : consensus_11764#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTTGGCGCGGGAGCCGGCGTGGCACGAGACCAGAGGGAGAGGGGCACTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGCGTTCATATCCGGCGCATGAGCTGCATGCTCTTCATCTGCATATGCTTTCCGGTTGCAACTGTCCTTCATTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAATATGAATTTCGCATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCGCGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCTCGGTCACAAGCCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTTTTTTCTCCTGGACATGGTAACTACTTTTTCAGTCCCCAAAAAAAAAA] [+] EMBL BI813664 [GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTTGGCGCGGGAGCCGGCGTGGCACGAGACCAGAGGGAGAGGGGCACTCTTCTTCCTTCGCGATCCGGGGTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGCGTTCATATCCGGCGCATGAGCTGCATGCTCTTCATCTGCATATGCTTTCCGGTTGCAACTGTCCTTCATTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAATATGAATTTCGCATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCGCGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCTCGGTCACAAGCCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTTTTTTCTCCTGGACATGGTAACTACTTTTTCAGTCCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11764#0 CTTATCTGTTGCCACATGGCCACACCAAGTCCAAACCCTCACCTCTCCATGTCCATCAAT 60 consensus_11764#1 -------------------------TAAACTTCATTTGATTTTTTTCTAAAAAAATCAAA 35 consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 GG-AGGAGCCACCGTTTCGGCTGGTTGGGCGGC---CACCCAACCTCGCCGGCGACGAAC 116 consensus_11764#1 GACAAGATCCAAGGACGAAAAAGGACGTGCGGCAGACGCTCTCCCTCCCAGGTCCCAGCC 95 consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 AGTGGATCACAGTAGCAGAAGCTG--CTTACTTCGACCATCATATGGATCTACCAGAGGC 174 consensus_11764#1 AGGGGTTTAT--TAGCTGATTCAAGACGTACCTT-ATCATC-TCTCCATTCGCCA----- 146 consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 TTCGGTACGAGGAGAATTGCAGTTCGTTCTGCCTCCCAGAAGAACTCGTCTCCTCCATTG 234 consensus_11764#1 TCGAGCCCGCCGGAGGCCAAAACGCCTTCTG-----CGGCAGCATCCACCAATTC--GCC 199 consensus_11764#2 ---------------------------------------------------AGTT--GTG 7 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 ATGACCACTGAGCAAGAAGCCGAAGACGAGGTGGTGCTAGAGTCGCCGGCGCACTTCCGC 294 consensus_11764#1 ATGGCCTCCGAGACCGAGCCCGA---CGCCGTGGTGTTCGAGGCTCCGGCGCACTTCCGC 256 consensus_11764#2 ATAGCCATGGAACCCGACGCCGA---CGAGTTGGTGTTCGACAGCTC---ATACCTCCGC 61 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 ATCTACAAGAGCGGCAAGATCGACCGCCTCAACCGGCCACCCGTCCTGCCCGCTGGTCTC 354 consensus_11764#1 ATCTACAAGAGCGGCAAGATGGACCGCCTTCACCGACCACCCTGCCTGCCCGCTGGCGTC 316 consensus_11764#2 ATCTACAAGAACGGCAAGGTAGACCGCCTCCACCGGCCCCCTCTCCTCGCCGCGGGCGTC 121 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 GACGAGGCCACCGGCGTCACCTCCAAGGACGTCGTCCTCGACGCCGACACCGGCGTCTCC 414 consensus_11764#1 GACGAGGCCACCGGCGTCGCCTCCAAGGACGTCGTCATCGACGCCGGCACCGGCCTCTCC 376 consensus_11764#2 GACGATGCCACCGGCGTCGTCTCCAAGGACGTCGTCCTCGACGCCGGGACAGGACTGTTC 181 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 GTCCGCCTCTTCCTCCCCAAGCT------TCAGGAGCCCTCCAAGAAGCTCCCCGTCGTC 468 consensus_11764#1 GTGCGCCTCTACCTCCCCAAGAT------CCAAGAGCCATCCAAGAAGCTCCCCGTCCTC 430 consensus_11764#2 GTGCGCGTCTTCCTGCCCAAGGTGCAAGACCAAGAACTCGGCAAAAAGCTTCCTGTCCTC 241 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 GTCTTCTTCCACGGCGGCGCGTTCTTCATCGAGTCGGCCGGCTCCGAGACGTACCACAAC 528 consensus_11764#1 GTCTTCTTCCACGGAGGCGGCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAAC 490 consensus_11764#2 GTGTACTTCCACGGCGGCGGCTTCATCATTGAGTCCGCGGACTCAGCCACGTACCACAAC 301 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 TACGTCAACTCCCTCGCCGCGGCGGCCG-GTGTCCTCGTCGTGTCCGTCGACTACCGGCT 587 consensus_11764#1 TACGTCAACCCCTTCGCCGCCGCGGCCG-GCGTCGTCGTGGTGTCCGTCGACTACCGCCT 549 consensus_11764#2 TACCTCAACTCCGCCGCCGCCGCCGCCG-GCGTCCTTGTGGTGTCCGTCGACTACCGCTT 360 consensus_11764#3 ------------------GCGAGGGCCCCGCGTACTTCGGCTGCCGTGCCGCGAGCGCTT 42 ** *** * ** * ** * * * * ** * consensus_11764#0 CGCCCCGGAGCACCCGCTCCCCGCGGGCTACGACGACTCGTGGGCGGCGCTCCAGTGGGC 647 consensus_11764#1 CGCCCCGGAGCACCCGCTGCCGGCGGCCTACGACGATTCCTGGGCCGGGCTACTGTGGGC 609 consensus_11764#2 AGCCCCGGAGAACCCGCTCCCTGCAGGATATGATGATTCTTGGGCGGCGCTCCAGTGGGC 420 consensus_11764#3 GGCGCGGGAGCCGGCGTGGCACG-AGACCAGAGGGA---GAGGGGCACTCTTCTTCCTTC 98 ** * **** ** * * * * ** *** ** * * consensus_11764#0 GGCCTCGGCGCA---AGACGGATGGATCGCCGAGCACGGCGAC-ACGGCTCGCCTCTTCG 703 consensus_11764#1 GGCGTCAGCGCA---AGATGGCTGGCTCGCGGAGCACGGCGAC-GTGTCCCGACTGTTCA 665 consensus_11764#2 GGTGTCCGCCCATGCGGACGACTGGATCACCGAGCACGGCGAC-ACGGCGCGCGTCTTCG 479 consensus_11764#3 GCGATCCGGG-----GTGCGACAAGGCCACACAGCTCATGGACCGCGTCGTGGC-GTTCA 152 * ** * * * * * *** * *** * * * *** consensus_11764#0 TCGCCGGCGACAGCGCCGGCGCCAACATCGCGCACGAGATGCTCGTGAGGGCGGCCGCCA 763 consensus_11764#1 TCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACATGCTCCTGAGGGCGGCCTCCA 725 consensus_11764#2 TCGCCGGCGACAGCGCCGGCGGCAACATCGTGCACGACGTGCTCCTGAGGGCATCCTCGA 539 consensus_11764#3 TATCCGGCG-CATGAGCTGCATGCTCTTCATCTGC-ATATGCTTTC-----CGGTTGCAA 205 * ****** ** * ** * ** * * **** * * * consensus_11764#0 GCGGCGGGCGCCCGAGGATGGAGGGCGCGATCCTGCTGCACCCGTGGTTCGG--CGGGAG 821 consensus_11764#1 ACGGCGGGC---CGAGGATCGAGGGCGCGTTACTGCTGCACCCGTGGTTCGG--CGGGAG 780 consensus_11764#2 ACAAAGGAC---CGAGGATAGAGGGCGCGATCATGCTGCACCCGTTCTTCGG--CGGGAG 594 consensus_11764#3 CTGTCCTTCA--TTGAAACCAAATAAATGGTTCTATTAGTTTTTTTTTTGGGGACGGGAA 263 * * * * * * * * ** ** ***** consensus_11764#0 CAAGGAGATCGAGGGGGAGCCGGAGGGCGGCGCCGCGATCACCGCGGCGATGTGGAACTA 881 consensus_11764#1 CACGGTTCTCGAGGGGGAGCCCCCGGCCGCGGCCGCGCTCACCGGTATGATATGGTGCTA 840 consensus_11764#2 CACGGCCATCGACGGCGAGTCCGACGAGGCGGTCTACATAGCCTCGAAGGTGTGGCCGTT 654 consensus_11764#3 TATGAATTTCGC-----ATTTGCAGTTCGCTGCTACGTTCTTGGAAGAAATATTTTATCG 318 * * *** * * * * * * consensus_11764#0 CGCGTGCCCGGGCGCCGCCGCCGGCGCGGACGACCCGCGGCTGAACCCGCTGGCGGCCGG 941 consensus_11764#1 CGCGTGCCCCGGCGCGTCCGGCGGCGCGGACGACCCGAGGATGAACCCGCTTGCGCCTGG 900 consensus_11764#2 CGCGTGCCCGGGCGCAGTGAACGGCGTGGACGACCCGAGGATGAACCCGACGGCGCCTGG 714 consensus_11764#3 CGTGTATGTTCTTCCACTTGGACTGGTGGTTTCCGTTGCTCTGAGCCT--CGGTCACAAG 376 ** ** * * ** * *** ** * * * consensus_11764#0 CGGGCCGGTGCTGGAGGAGC-TCGCGTGCGAGAGGATGCTCGTGTGCGCGGGGGGGAAGG 1000 consensus_11764#1 CGCGCCGGCGCTGGAGAAGC-TCGCGTGCGAGAGGATGCTGGTGGCGGCGGGGCAGACCG 959 consensus_11764#2 CGCGCCGGCGCTGGAGAAGC-TCGGGTGCGAGCGGCTGCTCGTGTGCACGGCGCAGGAGG 773 consensus_11764#3 CCGACCAGCGATGTAATGTTGTCATGTTGCACTCGGTGGTAGCAACGTTCCGTTTGGTTT 436 * ** * * ** * ** ** * * ** * * * consensus_11764#0 ACGTGCTCGCGGCGAGGAACCGCGCGTACTACGACGCCGTGGCGGCGAGCGCGTGGCGCG 1060 consensus_11764#1 ACGGGCTGGCGGCGAGGGACCGCGCGTACTACGACGCCGTGGCGGCGAGCCCCTGGCGCG 1019 consensus_11764#2 ACTGGCTGGTGGCGAGGGGCCGCGCGTACTACGGCGCCGTGGCCGCGAGCGCGTGGCGCG 833 consensus_11764#3 TTTTCTCCTGGACATGGTAAC-TACTTTTTCAGTCCCCAAAAAAAAAA------------ 483 * * ** * * * * * * ** * consensus_11764#0 GGAGCGCGGCGTGGCTCGAGTCGGAGGGGGAGGGGCACGTGTTCTTCCTGGGGAATTCGG 1120 consensus_11764#1 GGACGGCGACGTGGGTGGAGTCGGAGGGGGAGGGGCACGTCTTCTTCCTGGAGAAGCCGG 1079 consensus_11764#2 GGAGCGCGGCGTGGCACGAGACGGAGGGAGAGGGGCACGTCTTCTTCCTTCGCGATCCGG 893 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 AGTGCGAGAATGCCAAGCAGCTCATGGATCGCATCGTGGCGTTCATAGCCGGTGGATGAG 1180 consensus_11764#1 AGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGAGTTCATATCCGCCGGGTCTC 1139 consensus_11764#2 GGTGCGACAAGGCCAAGCAGCTCATGGACCGCGTCGTGGCGTTCATAGCCAGCGCATGAA 953 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 CTGCTTGGATCGTATATAAGTCAACATTGAAGTTGAATCGAGTTATTTGTTTCACTCATC 1240 consensus_11764#1 CTGCCTGAT-----TAAAAATTAGCTCC--ATCCGGAT-GCGCCCCGCGTTGAAGTCGTC 1191 consensus_11764#2 CTTCTCTTCTT---CATCTGTGTATGCT---TGCGGACTTGCAGCTGTATCTTGCTTGCC 1007 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 ATTCACTGGGTTGAAATCGAATCGAAGTAAATAGTGTACAAACACTACTAAGCTTTCGAA 1300 consensus_11764#1 GT--AATGTATCGAACTTAG---GGCTCGAATAATTTG----GACTGATCATCCTTTCAT 1242 consensus_11764#2 TG--AGATTAATAAATCAATAAAATGTTATATATT------------------------- 1040 consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 GGTGAAACTGAAATTGATTGCGTGCCACAAAATTGTGATGTATTTGTAATAGTACATCCC 1360 consensus_11764#1 GA---------------------------------------------------------- 1244 consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 TAGAAGGGTCATCGATAGATTTTTTTTTCTTGCATAATCAAAAGTGGCAACTATTACCTT 1420 consensus_11764#1 ------------------------------------------------------------ consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 ACAATGAACCATCGCATGGACTAGGGAACATAAGGGTATGTTAAATGATAGAGACGAGTA 1480 consensus_11764#1 ------------------------------------------------------------ consensus_11764#2 ------------------------------------------------------------ consensus_11764#3 ------------------------------------------------------------ consensus_11764#0 TGGTCTCTTAGACAATACAA 1500 consensus_11764#1 -------------------- consensus_11764#2 -------------------- consensus_11764#3 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||