These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 3039 fasta sequence [TCCTCAGTTGGCAACTCGCTCCACATCCCCCGTCGAGTCTCGCTCTCGCCGCGCCGTCGGTTCCAAACCCTAGCTCTCCCTCCCGGCCCCCCAAATCCTGCCCTCCGGAGCTCCGATTCACCGCCTCGCCGCGCGATTCCGGCCCTACCCTGGCGCCCTGCGCCCCCGATTAGCCCCCATCCTGCTAGATCCACCCGCACAATGGAGCCCAAGGAGGCGCCCCCGCCGCCGCCGCCCCAGTCTCCGTCCTCCACCGAGGAGGAAGGGATGCTCTCCGTCACGGCCGCTATGGCCAGAGACGCCGCCGTGCTGTTCCAGAGCCGCCGCTACGCCGACTGCGCCGAGGTGCTCGCGCAGCTCCTGCTCAAGAAGGAGGGCGACCCCAAGGTCCTTCACAATATGGCTATTGCAGAATCTTTCTTGGATGGTTGTCCTGACCCAAAGAAATTGCTTGAAATTCTAGGCAATGTTAAGAGAAGAAGTGAAGAGCTTGCCTGTGCATCTAGACAACAAACTGATTCTGCCAATGGGACAGGAAACAGTGTTTCTTCTGGATCAAGAGGGAGTGGCATTATACCTCTGATTTCTGCTGCAAATAATGCGACAACCTATGGGGATGAGTTTGACACAACCATAATAACATTCAACACTGCTGTTATCCTTTACCATCTTCACGATTATGAATCTGCACTATCTATTTTGGATCCACTCTACCGAAATATTGAACCAATTGATGAGACAACTGCTCTTCATGTATGCTTTCTGTTGTTGGATATTACATTAGCTTTGCAAGATGCATCGAATGCCGCGGATATAATTCAGTACTTGGAAAGGTCATTTGGAGTAGTTAGCGCAACAAACCAGAATGAAAATGCTAATACAGCT---CAGCAGCAGTCAGCTCAACCAAAGCCTTCTGCAAAGATTAGCACACCTCCAGATTCTGATTCAAATACTTGTGCTGGTGGATCTGAAAACCTTTCAGCAGGAAATTTTTCTGATGATACACTTGAGTTTGAATCTTTTTACTCTACCTTGGATGGTGGTAATCAGAACTTGGGCAGACCAATTTTAAATGATTTCTCAAGGGCTTCAGCTGATCTTGCTGCCACTGCTGCTGATTTGAAAGTTAGACTGCAAATATACAAGGTCCGGCTTCTGCTTCTTACTAGGAACCTTAAGGTTGCAAAGCGAGAACTGAAAGTTCTGATGAACATGGCACGTGGTAGGGATTCATCAACAGAGCTTCTCCTGAAATCTCAGTTGGAATATGCCAGAGGAAACTATCGCAAGGCTGTGAAGCTGCTGAGCACACCCAATAATCGGAGTGAACAAGCAATGCTGGCCATGTTCTACAATAATCTTGGTTGCATACTCCACCAACAGAGATCTATTCAAACCTCAGTATGGTGCTTCAGCAAAGCATTGAAATATAGCTTATCACTTCGTTCAGAGAAACCATGCAAGCTGACCGCAATATCGCAAGACAAATCTTGTCTTATTTCATACAACTGCGGCATCCAACATTTGATGTGCGGGAAACCTTTGTTAGCAGCTCGCTGTTTTCGTGAAGCCATGCCGCTCTTGTGCAACAGGTCCCTCTTTTGGCTCCGTTTTGCTGAGTGTAGCCTGCTAGCTCTGGAAAAGGGTATCCTGACTTCAAGTGGTGCTACTTCGTGCAATGATGAGATTGAAGTTGATGTTATGGGGTCAGGAAAATGGCGGCACTTAGTTATAAACCCAGTGAAGCCAAGTCATTCTTCAGAATCTGGGGAGGAGGTAAGTTTGGACAAATATGGAAATCTGATATCCCTTAGATTTGCTAGACAGTGTCTACTCAATGCCCAAATTTTATTGGATCCCTCTACGAAGGAAAATCTGGTGATTGCATCAGGCACAGAGGAATCGAATCAAACATCACTGCAAGGCCAGAAAGGCTCAGGTCAGAAGAACACCACTAATACAGATTCCAAACCGCCTGGTCCAGCACTAACTAATGCAAATGGAGAACAGAAGGGAATTTCAAACTTGAATGTCACCTTGCAGAGCTCTCTTGCTTTGTATGATGACATATGTAGAAAAGAGAACCTCAAAATTAAACAAGCCATCTTGGGGGACCTTGCATTTATTGAGT-TGTGTCTTCAGAATCACTTGAAAGCTTTGTCTATTGCCAAGTTGCTACAGCAGCTGCCAGAATGTTCCAGGATGTATGTTTTCCTCAGCCATGTATACGCAGCTGAAGCACTTTGTGCACTGAATAGACCAAAGGAGGCTGCTGAGCAATTAACTGTTTATTTGAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGCGAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACAAAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGTGTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTATTGTTCGGGAAAGCAACGTGCAAAATCTTTTGAACCCGATGACCAAGATGAGTATGCTGTGGATCTTTTGCCGTTGCTGATGCAT] [+] EMBL AK103665 [TCCTCAGTTGGCAACTCGCTCCACATCCCCCGTCGAGTCTCGCTCTCGCCGCGCCGTCGGTTCCAAACCCTAGCTCTCCCTCCCGGCCCCCCAAATCCTGCCCTCCGGAGCTCCGATTCACCGCCTCGCCGCGCGATTCCGGCCCTACCCTGGCGCCCTGCGCCCCCGATTAGCCCCCATCCTGCTAGATCCACCCGCACAATGGAGCCCAAGGAGGCGCCCCCGCCGCCGCCGCCCCAGTCTCCGTCCTCCACCGAGGAGGAAGGGATGCTCTCCGTCACGGCCGCTATGGCCAGAGACGCCGCCGTGCTGTTCCAGAGCCGCCGCTACGCCGACTGCGCCGAGGTGCTCGCGCAGCTCCTGCTCAAGAAGGAGGGCGACCCCAAGGTCCTTCACAATATGGCTATTGCAGAATCTTTCTTGGATGGTTGTCCTGACCCAAAGAAATTGCTTGAAATTCTAGGCAATGTTAAGAGAAGAAGTGAAGAGCTTGCCTGTGCATCTAGACAACAAACTGATTCTGCCAATGGGACAGGAAACAGTGTTTCTTCTGGATCAAGAGGGAGTGGCATTATACCTCTGATTTCTGCTGCAAATAATGCGACAACCTATGGGGATGAGTTTGACACAACCATAATAACATTCAACACTGCTGTTATCCTTTACCATCTTCACGATTATGAATCTGCACTATCTATTTTGGATCCACTCTACCGAAATATTGAACCAATTGATGAGACAACTGCTCTTCATGTATGCTTTCTGTTGTTGGATATTACATTAGCTTTGCAAGATGCATCGAATGCCGCGGATATAATTCAGTACTTGGAAAGGTCATTTGGAGTAGTTAGCGCAACAAACCAGAATGAAAATGCTAATACAGCT CAGCAGCAGTCAGCTCAACCAAAGCCTTCTGCAAAGATTAGCACACCTCCAGATTCTGATTCAAATACTTGTGCTGGTGGATCTGAAAACCTTTCAGCAGGAAATTTTTCTGATGATACACTTGAGTTTGAATCTTTTTACTCTACCTTGGATGGTGGTAATCAGAACTTGGGCAGACCAATTTTAAATGATTTCTCAAGGGCTTCAGCTGATCTTGCTGCCACTGCTGCTGATTTGAAAGTTAGACTGCAAATATACAAGGTCCGGCTTCTGCTTCTTACTAGGAACCTTAAGGTTGCAAAGCGAGAACTGAAAGTTCTGATGAACATGGCACGTGGTAGGGATTCATCAACAGAGCTTCTCCTGAAATCTCAGTTGGAATATGCCAGAGGAAACTATCGCAAGGCTGTGAAGCTGCTGAGCACACCCAATAATCGGAGTGAACAAGCAATGCTGGCCATGTTCTACAATAATCTTGGTTGCATACTCCACCAACAGAGATCTATTCAAACCTCAGTATGGTGCTTCAGCAAAGCATTGAAATATAGCTTATCACTTCGTTCAGAGAAACCATGCAAGCTGACCGCAATATCGCAAGACAAATCTTGTCTTATTTCATACAACTGCGGCATCCAACATTTGATGTGCGGGAAACCTTTGTTAGCAGCTCGCTGTTTTCGTGAAGCCATGCCGCTCTTGTGCAACAGGTCCCTCTTTTGGCTCCGTTTTGCTGAGTGTAGCCTGCTAGCTCTGGAAAAGGGTATCCTGACTTCAAGTGGTGCTACTTCGTGCAATGATGAGATTGAAGTTGATGTTATGGGGTCAGGAAAATGGCGGCACTTAGTTATAAACCCAGTGAAGCCAAGTCATTCTTCAGAATCTGGGGAGGAGGTAAGTTTGGACAAATATGGAAATCTGATATCCCTTAGATTTGCTAGACAGTGTCTACTCAATGCCCAAATTTTATTGGATCCCTCTACGAAGGAAAATCTGGTGATTGCATCAGGCACAGAGGAATCGAATCAAACATCACTGCAAGGCCAGAAAGGCTCAGGTCAGAAGAACACCACTAATACAGATTCCAAACCGCCTGGTCCAGCACTAACTAATGCAAATGGAGAACAGAAGGGAATTTCAAACTTGAATGTCACCTTGCAGAGCTCTCTTGCTTTGTATGATGACATATGTAGAAAAGAGAACCTCAAAATTAAACAAGCCATCTTGGGGGACCTTGCATTTATTGAGT TGTGTCTTCAGAATCACTTGAAAGCTTTGTCTATTGCCAAGTTGCTACAGCAGCTGCCAGAATGTTCCAGGATGTATGTTTTCCTCAGCCATGTATACGCAGCTGAAGCACTTTGTGCACTGAATAGACCAAAGGAGGCTGCTGAGCAATTAACTGTTTATTTGAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGCGAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACAAAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGTGTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTATTGTTCGGGAAAGCAACGTGCAAAATCTTTTGAA ] [+] EMBL CB629510 [ CGCTCTCGCCGCGCCGTCGGTTCCAAACCCTAGCTCTCCCTCCCGGCCCCCCAAATCCTGCCCTCCGGAGCTCCGATTCACCGCCTCGCCGCGCGATTCCGGCCCTACCCTGGCGCCCTGCGCCCCCGATTAGCCCCCATCCTGCTAGATCCACCCGCACAATGGAGCCCAAGGAGGCGCCCCCGCCGCCGCCGCCCCAGTCCCCGTCCTCCACCGAGGAGGAAGGGATGCTCTCCGTCACGGCCGCTATGGCCAGAGACGCCGCCGTGCTGTTCCAGAGCCGCCGCTACGCCGACTGCGCCGAGGTGCTCGCGCAGCTCCTGCTCAAGAAGGAGGGCGACCCCAAGGTCCTTCACAATATGGCTATTGCAGAATCTTTCTTGGATGGTTGTCCTGACCCAAAGAAATTGCTTGAAATTCTAGGCAATGTTAAGAGAAGAAGTGAAGAGCTTGCCTGTGCATCTAGACAACAAACTGATTCTGCCAATGGGACAGGAAACAGTGTTTCTTCTGGATCAAGAGGGAGTGGCATTATACCTCTGATTTCTGCTGCAAATAATGCGACAACCTATGGGGATGAGTTTGACACAACCATAATAACATTCAACACTGCTGTTATCCTTTACCATCTTCACGATTATGAATCTGCACTATCTATTTTGGATCCACTCTACCGAAATATTGAACCAATTGATGAGACAACTGCTCTTCATGTATGCTTTCTGTTGTTGGATATTACATTAGCTTTGCAAGATGCATCGAATGCCGCGGATATAATTCAGTACTTGGAAAGGTCATTTGGAGTAGTTAGCGCAACAAACCAGAATG AAATGCTAATACAGCT CAGCAG ] [+] EMBL CB635958 [ TGCTGCTATCCTTTACCATCTTCACGATTATGAATCTGCACTATCTATTTTGGATCCACTCTACCGAAATATTGAACCAATTGATGAGACAACTGCTCTTCATGTATGCTTTCTGTTGTTGGATATTACATTAGCTTTGCAAGATGCATCGAATGCCGCGGATATAATTCAGTACTTGGAAAGGTCATTTGGAGTAGTTAGCGCAACAAACCAGAATGAAAATGCTAATACAGCTCAGCAGCAGCAGTCAGCTCAACCAAAGCCTTCTGCAAAGATTAGCACACCTCCAGATTCTGATTCAAATACTTGTGCTGGTGGATCTGAGAACCTTTCAGCAGGAAATTTTTCTGATGATACACTTGAGTTTGAATCTTTTTACTCTACCTTGGATGGTGGTAATCAGAACTTGGGCAGACCAATTTTAAATGATTTCTCAAGGGCTTCAGCTGATCTTGCTGCCACTGCTGCTGATTTGAAAGTTAGACTGCAAATATACAAGGTCCGGCTTCTGCTTCTTACTAGGAACCTTAAGGTTGCAAAGCGAGAACTGAAAGTTCTGATGAACATGGCACGTGGTAGGGATTCATCAACAGAGCTTCTCCTGAAATCTCAGTTGGAATATGCCAGAGGAAACTATCGCAAGGCTGTGAAGCTGCTGAGCACACCCAATAATCGGAGTGAACCAGCAATGCTGGCCATGTTCTACAATAATCTTGGTTGCATACTCCACCAACAGAGATCTATTCGAACCTCAGTATGGTGCTTCAGCAAAGCATTGAAATATAGCT ] [+] EMBL CB675007 [ ATCTTGTCTTATTTCATACAACTGCGGCATCCAACATTTGATGTGCGGGAAACCTTTGTTAGCAGCTCGCTGTTTTCGTGAAGCCATGCCGCTCTTGTGCAACAGGTCCCTCTTTTGGCTCCGTTTTGCTGAGTGTAGCCTGCTAGCTCTGGAAAAGGGTATCCTGACTTCAAGTGGTGCTACTTCGTGCAATGATGAGATTGAAGTTGATGTTATGGGGTCAGGAAAATGGCGGCACTTAGTTATAAACCCAGTGAAGCCAAGTCATTCTTCAGAATCTGGGGAGGAGGTAAGTTTGGACAAATATGGAAATCTGATATCCCTTAGATTTGCTAGACAGTGTCTACTCAATGCCCAAATTTTATTGGATCCCTCTACGAAGGAAAATCTGGTGATTGCATCAGGCACAGAGGAATCGAATCAAACATCACTGCAAGGCCAGAAAGGCTCAGGTCAGAAGAACACCACTAATACAGATTCCAAACCGCCTGGTCCAGCACTAACTAATGCAAATGGAGAACAGAAGGGAATTTCAAACTTGAATGTCACCTTGCAGAGCTCTCTTGCTTTGTATGATGACATATGTAGAAAAGAGAACCTCAAAATTAAACAAGCCATCTTGGGGGACCTTGCATTTATTGAGT TGTGTCTTCAGAATCACTTGAAAGCTTTGTCTATTGCCAAGTTGCTACAGCAGCTGCCAGAATGTTCCAGGATGTATGTTTTCCTCAGCCATGTATACGCAGCTGAAGCACT ] [-] EMBL CB629511 [ AGTGTGT TCTTCAGAATCACTTGAAAGCTTTGTCTATTGCCAAGTTGCTACAGCAGCTGCCAGAATGTTCCAGGATGTATGTTTTCCTCAGCCATGTATACGCAGCTGAAGCTCTTTGTGCACTGAATAGACCAAAGGAGGCTGCTGAGCAATTAACTGTTTATTTGAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGCGAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACAAAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGTGTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCT CCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAATTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTA ] [-] EMBL CB635959 [ TTTTCCTCAGCCATGTATACGCAGCTGAAGCTCTTTGTGCACTGAATAGACCAAAGGAGGCTGCTGAGCAATTAACTGTTTATTTGAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGCGAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACAAAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGTGTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCT CCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTTTTGGGGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATATGTTTTTA TGTTCGGGAAAGCAACGTG ] [-] EMBL CB675008 [ AAGGAGGCTGCTGAGCAATTAACTGTTTATTGNAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGCGAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACAAAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGTGTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAACTATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCAGTGCTAGCATCAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGATGTAGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTAGATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTATTGTTCGGGAAAGCAACGTGCAAAATCTTTTGAACCCGATGACCAAGATGAGTATGCTGTGGATCTTTTGCCGTTGCTGATGCAT] consensusID : consensus_11775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [AGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTATATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAGCTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGACGGATGAACTACTCTACGATATATGTGCTTATTGTTTGGCAAAAGTACCGGGCCACAACCTTTGTAACAAATAAAAAAATTAACACCCTCGCAGCGGGGGCCTGGCCCACCCTTTCCCCCTTTTATGGACCCCTATTACGTTTGTTTCCTGCCCCGTCCTTTTCCTATCTCCGTTGCCGGCGACACACCCGGGGCTTCTCCATCTTTAATCGGCCCGCCGGGCAATCCCCTTTTCCCCCCATTTTTCCTCCCTCTTCAACGCCCTCTTTTTGTTCCCCTTCTCCCTCTCCGTGCCCTCCCCTGTATGGTGTATCTCCCCTTTCCTTCCCGCTGCGCT] [+] EMBL CA753858 [AGAACTGTGAGATTTAGGAGGCATAGTGTAGCAGTCAGCAGTTAAGATAGGACCGGTCGCCCTTTTGATGATTTCTGTAGTTGATAATTGCCATTTCATCTTTTGGACCCTGACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTATATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGATTCAGGGGTGTAATGTGTCGGAGCTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGACGGATGAACTACTCTACGATATATGTGCTTATTGTTTGGCAAAAGTACCGGGCCACAACCTTTGTAACAAATAAAAAAATTAACACCCTCGCAGCGGGGGCCTGGCCCACCCTTTCCCCCTTTTATGGACCCCTATTACGTTTGTTTCCTGCCCCGTCCTTTTCCTATCTCCGTTGCCGGCGACACACCCGGGGCTTCTCCATCTTTAATCGGCCCGCCGGGCAATCCCCTTTTCCCCCCATTTTTCCTCCCTCTTCAACGCCCTCTTTTTGTTCCCCTTCTCCCTCTCCGTGCCCTCCCCTGTATGGTGTATCTCCCCTTTCCTTCCCGCTGCGCT] consensusID : consensus_11775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GGTAACCCCGTGCGTGCCCTTGGTGCCCGACAACCCCAGGCCAAGTGCTACGCATCATTTATGTGGACCTTCTTCAAGGGAAGCCACAAGAACCNNTCGCCAAGTTGAGACGATGTAGAACCTGTGAGATTTAGGAGCCCATAGTGTACCAGTCACCCAGTTAAGATAGGACCCGTCGCCCCTTTTGATGATTTCTGTAGTTGATAATTCGCCATTTACATCTTTTGGACCCCTGACCCCCACGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTGAGATCTCCCCCCTGTTCCCCACTTTAAAAGCTTTCCCTGGATTCCAGGGGTGTAATGTGTCGGAATTAATATCGTTTTAGTTTTCCGCTCTTTGGNCAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTATTGTTCGGGAAACACGTCAAATCTTTTGAACCCGATGAAAAA] [+] EMBL BM037995 [GGTAACCCCGTGCGTGCCCTTGGTGCCCGACAACCCCAGGCCAAGTGCTACGCATCATTTATGTGGACCTTCTTCAAGGGAAGCCACAAGAACCNNTCGCCAAGTTGAGACGATGTAGAACCTGTGAGATTTAGGAGCCCATAGTGTACCAGTCACCCAGTTAAGATAGGACCCGTCGCCCCTTTTGATGATTTCTGTAGTTGATAATTCGCCATTTACATCTTTTGGACCCCTGACCCCCACGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAAGAAAAACTGTGAGATCTCCCCCCTGTTCCCCACTTTAAAAGCTTTCCCTGGATTCCAGGGGTGTAATGTGTCGGAATTAATATCGTTTTAGTTTTCCGCTCTTTGGNCAGAAGAGGGATGAAATAGTTTACGATATATGTGCTTATTGTTCGGGAAACACGTCAAATCTTTTGAACCCGATGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11775#0 TCCTCAGTTGGCAACTCGCTCCACATCCCCCGTCGAGTCTCGCTCTCGCCGCGCCGTCGG 60 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTCCAAACCCTAGCTCTCCCTCCCGGCCCCCCAAATCCTGCCCTCCGGAGCTCCGATTCA 120 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CCGCCTCGCCGCGCGATTCCGGCCCTACCCTGGCGCCCTGCGCCCCCGATTAGCCCCCAT 180 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CCTGCTAGATCCACCCGCACAATGGAGCCCAAGGAGGCGCCCCCGCCGCCGCCGCCCCAG 240 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TCTCCGTCCTCCACCGAGGAGGAAGGGATGCTCTCCGTCACGGCCGCTATGGCCAGAGAC 300 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GCCGCCGTGCTGTTCCAGAGCCGCCGCTACGCCGACTGCGCCGAGGTGCTCGCGCAGCTC 360 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CTGCTCAAGAAGGAGGGCGACCCCAAGGTCCTTCACAATATGGCTATTGCAGAATCTTTC 420 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTGGATGGTTGTCCTGACCCAAAGAAATTGCTTGAAATTCTAGGCAATGTTAAGAGAAGA 480 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 AGTGAAGAGCTTGCCTGTGCATCTAGACAACAAACTGATTCTGCCAATGGGACAGGAAAC 540 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 AGTGTTTCTTCTGGATCAAGAGGGAGTGGCATTATACCTCTGATTTCTGCTGCAAATAAT 600 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GCGACAACCTATGGGGATGAGTTTGACACAACCATAATAACATTCAACACTGCTGTTATC 660 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CTTTACCATCTTCACGATTATGAATCTGCACTATCTATTTTGGATCCACTCTACCGAAAT 720 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 ATTGAACCAATTGATGAGACAACTGCTCTTCATGTATGCTTTCTGTTGTTGGATATTACA 780 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTAGCTTTGCAAGATGCATCGAATGCCGCGGATATAATTCAGTACTTGGAAAGGTCATTT 840 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GGAGTAGTTAGCGCAACAAACCAGAATGAAAATGCTAATACAGCTCAGCAGCAGTCAGCT 900 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CAACCAAAGCCTTCTGCAAAGATTAGCACACCTCCAGATTCTGATTCAAATACTTGTGCT 960 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GGTGGATCTGAAAACCTTTCAGCAGGAAATTTTTCTGATGATACACTTGAGTTTGAATCT 1020 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTTTACTCTACCTTGGATGGTGGTAATCAGAACTTGGGCAGACCAATTTTAAATGATTTC 1080 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TCAAGGGCTTCAGCTGATCTTGCTGCCACTGCTGCTGATTTGAAAGTTAGACTGCAAATA 1140 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TACAAGGTCCGGCTTCTGCTTCTTACTAGGAACCTTAAGGTTGCAAAGCGAGAACTGAAA 1200 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GTTCTGATGAACATGGCACGTGGTAGGGATTCATCAACAGAGCTTCTCCTGAAATCTCAG 1260 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTGGAATATGCCAGAGGAAACTATCGCAAGGCTGTGAAGCTGCTGAGCACACCCAATAAT 1320 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CGGAGTGAACAAGCAATGCTGGCCATGTTCTACAATAATCTTGGTTGCATACTCCACCAA 1380 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CAGAGATCTATTCAAACCTCAGTATGGTGCTTCAGCAAAGCATTGAAATATAGCTTATCA 1440 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CTTCGTTCAGAGAAACCATGCAAGCTGACCGCAATATCGCAAGACAAATCTTGTCTTATT 1500 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TCATACAACTGCGGCATCCAACATTTGATGTGCGGGAAACCTTTGTTAGCAGCTCGCTGT 1560 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTTCGTGAAGCCATGCCGCTCTTGTGCAACAGGTCCCTCTTTTGGCTCCGTTTTGCTGAG 1620 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TGTAGCCTGCTAGCTCTGGAAAAGGGTATCCTGACTTCAAGTGGTGCTACTTCGTGCAAT 1680 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GATGAGATTGAAGTTGATGTTATGGGGTCAGGAAAATGGCGGCACTTAGTTATAAACCCA 1740 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GTGAAGCCAAGTCATTCTTCAGAATCTGGGGAGGAGGTAAGTTTGGACAAATATGGAAAT 1800 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CTGATATCCCTTAGATTTGCTAGACAGTGTCTACTCAATGCCCAAATTTTATTGGATCCC 1860 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TCTACGAAGGAAAATCTGGTGATTGCATCAGGCACAGAGGAATCGAATCAAACATCACTG 1920 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CAAGGCCAGAAAGGCTCAGGTCAGAAGAACACCACTAATACAGATTCCAAACCGCCTGGT 1980 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CCAGCACTAACTAATGCAAATGGAGAACAGAAGGGAATTTCAAACTTGAATGTCACCTTG 2040 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CAGAGCTCTCTTGCTTTGTATGATGACATATGTAGAAAAGAGAACCTCAAAATTAAACAA 2100 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GCCATCTTGGGGGACCTTGCATTTATTGAGTTGTGTCTTCAGAATCACTTGAAAGCTTTG 2160 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TCTATTGCCAAGTTGCTACAGCAGCTGCCAGAATGTTCCAGGATGTATGTTTTCCTCAGC 2220 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CATGTATACGCAGCTGAAGCACTTTGTGCACTGAATAGACCAAAGGAGGCTGCTGAGCAA 2280 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TTAACTGTTTATTTGAGAGATGGCGATGATATTGAGTTGCCTTACAGCATTGAGAACTGC 2340 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GAGAAAGCCCTTGTTGAGAAAGACAGCGATGGTGAAGATTCAGTTGCTCCGGTAGTCACA 2400 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 AAATTGTCCTCAGGAGAATCTCAGTATTCAGAAAGCCTCAAGCCTGAGGAAGCTCAGGGT 2460 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GTTCTTTATATTGACCTAGGCATGACAGCTGCAGTGCAGGGAGAGCTTGAGCAGGCTAAC 2520 consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 TATATGGTAAGCCGTGGCGTTGCCTTGTTGCCCAACAACCCCAGGGCA-GTGCTA-GCAT 2578 consensus_11775#2 -----GGTAACCCCGTGCGTGCCCTTGGTGCCCGACAACCCCAGGCCAAGTGCTACGCAT 55 consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 CAGTTTATGTGGACCTTCTTCAAGGGAAGGCACAAGAAGCAATCGCCAAGTTGAGACGAT 2638 consensus_11775#2 CA-TTTATGTGGACCTTCTTCAAGGGAAGCCACAAGAACCNNTCGCCAAGTTGAGACGAT 114 consensus_11775#1 ------------------------------------------------------------ consensus_11775#0 GTAGAAC-TGTGAGATTTAGGAGGC-ATAGTGTAGCAGTCAGC-AGTTAAGATAGGACCG 2695 consensus_11775#2 GTAGAACCTGTGAGATTTAGGAGCCCATAGTGTACCAGTCACCCAGTTAAGATAGGACCC 174 consensus_11775#1 --AGAAC-TGTGAGATTTAGGAGGC-ATAGTGTAGCAGTCAGC-AGTTAAGATAGGACCG 55 ***** *************** * ******** ****** * *************** consensus_11775#0 GTCGCCC-TTTTGATGATTTCTGTAGTTGATAATT-GCCATTT-CATCTTTTGGACCC-T 2751 consensus_11775#2 GTCGCCCCTTTTGATGATTTCTGTAGTTGATAATTCGCCATTTACATCTTTTGGACCCCT 234 consensus_11775#1 GTCGCCC-TTTTGATGATTTCTGTAGTTGATAATT-GCCATTT-CATCTTTTGGACCC-T 111 ******* *************************** ******* ************** * consensus_11775#0 GACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAA 2811 consensus_11775#2 GACCCCCACGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAA 294 consensus_11775#1 GACCCCCAGGTGGATGATCGAAGATCGTAATGTTCTTGTGTGTACCATACATAAGAAGAA 171 ******** *************************************************** consensus_11775#0 GAAAAACTGT-AGATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGA--TTCAGGG 2868 consensus_11775#2 GAAAAACTGTGAGATCTCCCCCCTGTTCCCCACTTTAAAAGCTTTCCCTGGATTCCAGGG 354 consensus_11775#1 GAAAAACTGT-ATATCTCCCCCCCTTTCCCCACTTTAAAAGCTTTCCCTGA--TTCAGGG 228 ********** * ********** ************************* * ***** consensus_11775#0 GTGTAATGTGTCGGAGTTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGAGGGAT 2928 consensus_11775#2 GTGTAATGTGTCGGAATTAATATCGTTTTAGTTTT-CCGCTCTTTGGNCAGAAGAGGGAT 413 consensus_11775#1 GTGTAATGTGTCGGAGCTAATATCGTTTTAGTTTTGCCGCTCTTTGGACAGAAGACGGAT 288 *************** ****************** *********** ******* **** consensus_11775#0 GAAATAGTTTACGATATATGTGCTTATTGTTCGG-GAAAGCAACGTGCAAAATCTTTTGA 2987 consensus_11775#2 GAAATAGTTTACGATATATGTGCTTATTGTTCGG-GAAA----CACGTCAAATCTTTTGA 468 consensus_11775#1 GAACTACTCTACGATATATGTGCTTATTGTTTGGCAAAAGTACCGGGCCACAACCTTTGT 348 *** ** * ********************** ** *** * * * * * **** consensus_11775#0 ACCCGATGACCAAGATGAG---TATGCTGTGGATCTTTTGCCGTTGCTGATGCAT----- 3039 consensus_11775#2 ACCCGATGAAAAA----------------------------------------------- 481 consensus_11775#1 AACAAATAAAAAAATTAACACCCTCGCAGCGGGGGCCTGGCCCACCCTTTCCCCCTTTTA 408 * * ** * ** consensus_11775#0 ------------------------------------------------------------ consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 TGGACCCCTATTACGTTTGTTTCCTGCCCCGTCCTTTTCCTATCTCCGTTGCCGGCGACA 468 consensus_11775#0 ------------------------------------------------------------ consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 CACCCGGGGCTTCTCCATCTTTAATCGGCCCGCCGGGCAATCCCCTTTTCCCCCCATTTT 528 consensus_11775#0 ------------------------------------------------------------ consensus_11775#2 ------------------------------------------------------------ consensus_11775#1 TCCTCCCTCTTCAACGCCCTCTTTTTGTTCCCCTTCTCCCTCTCCGTGCCCTCCCCTGTA 588 consensus_11775#0 -------------------------------- consensus_11775#2 -------------------------------- consensus_11775#1 TGGTGTATCTCCCCTTTCCTTCCCGCTGCGCT 620 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||