cluster # 11781

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Oryza sativa
cluster # 11781 cluster # 11781 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11781#0 length = 627 sequences # 8

consensus_11781#1 length = 431 sequences # 1

consensusID : consensus_11781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 627
fasta sequence

                              [TGNGNACGCGTGGGTNGG-GTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]

[+] EMBL OS0680A              [TGNGNACGCGTGGGTNGGNGTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTAT                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSR15202B            [            aGTTGG GTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGNCGNCGNCGNCGGCGNCA NGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGNATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGNGACAACAGTTGAGATTGACGATGAGACA                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK060459             [                      AGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTG                                                              ]
[+] EMBL AK099337             [                       GCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCA                                          ]
[+] EMBL CF300945             [                         TAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGAGGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACA                                                                                                                ]
[+] EMBL CA756855             [                                                                                                   AGGAGGAGATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAANNNANAAAAAAATAANNAAAAAAANAN]
[+] EMBL AU093176             [                                                                                                                       GAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCNTCTACGTCAAGNTCAGGCCCGACCGNGAG TCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGNAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  ]
[-] EMBL CF300946             [                                                                                                                                                                                                                                                                                                                                                            TCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTTTGATGGATTAAAGTTTTAGCATATGATACAATTGTGTAACAATTTTTGATCGAGGTGCTAGTTTTTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]




>consensus_11781#0
TGNGNACGCGTGGGTNGGGTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGA
GGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGA
GCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGA
CCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGA
TGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCG
CACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTC
TCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGT
AATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGG
ATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCT
ACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAN

consensusID : consensus_11781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [ATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA]

[+] EMBL AU173165             [ATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA]




>consensus_11781#1
ATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAA
CATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGAT
GAGACATATGAAGAAATTGTGCGCACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGA
GGTGATGGTGTCATTTTGGTTTCTCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCT
CCTGCCGATTGTCAACCATGAGTAATGTGTATTTTTTAATCAATGGCATGTGTTATGTGC
TGAAGTGCTACTATTTNTGATGGATTCTAGTTTTAGCATATGATACAATTGTGTAACAAT
TTNTGATCGAGGTGCTAGTTTCTACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11781#0      TGNGNACGCGTGGGTNGGGTAAGCTAGGGTTTAGGTCTCGGCGCGCGGCGGAGGGGAGGA 60
consensus_11781#1      ------------------------------------------------------------
                                                                                   

consensus_11781#0      GGAGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGCTGAGGAGGAGATCGCGGTGAAGGA 120
consensus_11781#1      ------------------------------------------------------------
                                                                                   

consensus_11781#0      GCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGA 180
consensus_11781#1      -------------------------------------ATNTACGTCAAGCTCAGGTCCGA 23
                                                            ** ********************

consensus_11781#0      CCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTCTTGGAGA 240
consensus_11781#1      CCGCGAGCTCCGCGGCAAGCTCCATGCATACGATCAACATTTAAACATGATTNTTGGAGA 83
                       **************************************************** *******

consensus_11781#0      TGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCG 300
consensus_11781#1      TGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCG 143
                       ************************************************************

consensus_11781#0      CACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTC 360
consensus_11781#1      CACCACAAAACGCACTATCCCCTTCCTTTTTGTTCGAGGTGATGGTGTCATTTTGGTTTC 203
                       ************************************************************

consensus_11781#0      TCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGT 420
consensus_11781#1      TCCACCCCTCCGAACGGCATGAAGTATGAAGGAAGCTCCTGCCGATTGTCAACCATGAGT 263
                       ************************************************************

consensus_11781#0      AATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTCTGATGG 480
consensus_11781#1      AATGTGTATTTTTTAATCAATGGCATGTGTTATGTGCTGAAGTGCTACTATTTNTGATGG 323
                       ***************************************************** ******

consensus_11781#0      ATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTCTGATCGAGGTGCTAGTTTCT 540
consensus_11781#1      ATTCTAGTTTTAGCATATGATACAATTGTGTAACAATTTNTGATCGAGGTGCTAGTTTCT 383
                       *************************************** ********************

consensus_11781#0      ACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAATCAACTCAATCCCGAAGCACTAA 600
consensus_11781#1      ACTGTCATGTTGAATCAACCTTTTGTTACCAGATTAAAAAAAAAAAAA------------ 431
                       *************************************  **   **              

consensus_11781#0      AAAAAAAAAAAAAAAAAAAAAAAAAAN 627
consensus_11781#1      ---------------------------