These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1031 fasta sequence [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG-CCCCGGGG-CCGC-GCCCAC-AAGCGGATGCAGTAC-AACCGCCGCTTCGTCACC-GCC-GTCGTC-GGCTTCGGCAAGAAGCGCGGGC-C-AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT] [+] EMBL CF299209 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAG CGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGTTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAA ] [+] EMBL BE039801 [ tGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTC ] [+] EMBL BE040739 [ TCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT] [+] EMBL BI794991 [ ACAAGAAGAAGAAGCCCCCGGGGCCCGCAGCCCACAAAGCGGATGCAGTACAAACCGCCGCTTCGTCACCAGCCAGTCGTCAGGCTTCGGCAAGAAGCGCGGGCACAAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAA ] [-] EMBL CF299210 [ TTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAAA ] consensusID : consensus_11786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 475 fasta sequence [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA] [-] EMBL CF331966 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA] [+] EMBL CF331965 [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAA ] [+] EMBL C27939 [ GCCGAA GTGGCGAA NAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTNTCATTAATTAATACTCATGGTTCCCTTTTTTTNTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATNTTTGGTATTGAACTGATGTCACTGTAATACCNATGATATCTCTATGGNTGGTGTTAAGATC ] [+] EMBL AU161110 [ GAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11786#0 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60 consensus_11786#1 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60 ************************************************************ consensus_11786#0 TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120 consensus_11786#1 TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120 ************************************************************ consensus_11786#0 TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180 consensus_11786#1 TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180 ************************************************************ consensus_11786#0 ACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240 consensus_11786#1 ACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240 ******* **************************************************** consensus_11786#0 AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCC 300 consensus_11786#1 AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCC 300 ********************************** ************************* consensus_11786#0 CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360 consensus_11786#1 CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360 ************************************************************ consensus_11786#0 GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAA 420 consensus_11786#1 GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTT---------AT 411 ***************************************** ****** * consensus_11786#0 AATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA 480 consensus_11786#1 CGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCG 471 * *** *********************** **** * * * * consensus_11786#0 AAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCC 540 consensus_11786#1 TTGA-------------------------------------------------------- 475 * consensus_11786#0 CCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTA 600 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 AATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAG 660 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 ATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAA 720 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 CCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCT 780 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 TTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGC 840 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 TCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTT 900 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 GGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAG 960 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 AAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATT 1020 consensus_11786#1 ------------------------------------------------------------ consensus_11786#0 ACCATTAAAAT 1031 consensus_11786#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||