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Oryza sativa
cluster # 11786 cluster # 11786       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11786#0 length = 1031 sequences # 5  
consensus_11786#1 length = 475 sequences # 4  

consensusID : consensus_11786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1031
fasta sequence
                              [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG-CCCCGGGG-CCGC-GCCCAC-AAGCGGATGCAGTAC-AACCGCCGCTTCGTCACC-GCC-GTCGTC-GGCTTCGGCAAGAAGCGCGGGC-C-AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT]

[+] EMBL CF299209             [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAG   CGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGTTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BE039801             [                   tGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAAAATAAAGAATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BE040739             [                               TCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAG CCCCGGGG CCGC GCCCAC AAGCGGATGCAGTAC AACCGCCGCTTCGTCACC GCC GTCGTC GGCTTCGGCAAGAAGCGCGGGC C AAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCCCCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTAAATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAGATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAACCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCTTTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGCTCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTTGGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAGAAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATTACCATTAAAAT]
[+] EMBL BI794991             [                                                                                                                                    ACAAGAAGAAGAAGCCCCCGGGGCCCGCAGCCCACAAAGCGGATGCAGTACAAACCGCCGCTTCGTCACCAGCCAGTCGTCAGGCTTCGGCAAGAAGCGCGGGCACAAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CF299210             [                                                                                                                                                                                                                                                                                   TTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_11786#0 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA ACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCC CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAA AATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA AAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCC CCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTA AATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAG ATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAA CCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCT TTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGC TCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTT GGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAG AAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATT ACCATTAAAAT



consensusID : consensus_11786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 475
fasta sequence
                              [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA]

[-] EMBL CF331966             [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA]
[+] EMBL CF331965             [GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCATGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTGTTCAAAAAAA                                             ]
[+] EMBL C27939               [                                                                                                                GCCGAA GTGGCGAA NAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTNTCATTAATTAATACTCATGGTTCCCTTTTTTTNTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATNTTTGGTATTGAACTGATGTCACTGTAATACCNATGATATCTCTATGGNTGGTGTTAAGATC                                                                    ]
[+] EMBL AU161110             [                                                                                                                   GAAGGTGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACAACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCGAGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCCCTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACTGATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAaaa                                                       ]


>consensus_11786#1 GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA ACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCC CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTTATCGTCAAGTG TTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCGTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11786#0      GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60
consensus_11786#1      GCCGCCGCTGCCGCCTCGTCGTCCCAAATCGTCCGAGCGCCGCCGCCGCCGCCGCCGCCA 60
                       ************************************************************

consensus_11786#0      TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120
consensus_11786#1      TGGGTAAGGTTCACGGCTCGCTGGCTCGCGCCGGGAAGGTGAGGGGGCAGACGCCGAAGG 120
                       ************************************************************

consensus_11786#0      TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180
consensus_11786#1      TGGCGAAGCAGGACAAGAAGAAGAAGCCCCGGGGCCGCGCCCACAAGCGGATGCAGTACA 180
                       ************************************************************

consensus_11786#0      ACCGCCGCTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240
consensus_11786#1      ACCGCCGTTTCGTCACCGCCGTCGTCGGCTTCGGCAAGAAGCGCGGGCCAAACTCCTCCG 240
                       ******* ****************************************************

consensus_11786#0      AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGTCTCATTAATTAATACTCATGGATCC 300
consensus_11786#1      AGAAGTAGATCTAGAGATCGCTCCTTTGCCCCCGCCTCATTAATTAATACTCATGGATCC 300
                       ********************************** *************************

consensus_11786#0      CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360
consensus_11786#1      CTTTTTTTGTTTGTTCCCTAGTAGTTTTTTGTTCAAGTATGCAATTTTTGGTATTGAACT 360
                       ************************************************************

consensus_11786#0      GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTTAGATCTAAAAAAAAAAAA 420
consensus_11786#1      GATGTCACTGTAATACCTATGATATCTCTATGGATGGTGTTAAGATCTT---------AT 411
                       ***************************************** ******          * 

consensus_11786#0      AATAAAGAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAA 480
consensus_11786#1      CGTCAAGTGTTCAAAAAAAAAAAAAAAAAAAACAAAATCATGCCGTTACGTAGCGTATCG 471
                         * ***  *********************** ****  *       *   *    *   

consensus_11786#0      AAAAAANCCTTTGGGGGGGGGCCCGGCCCCAAATTCCCCTTTTAGGGAGTCTTTTTCCCC 540
consensus_11786#1      TTGA-------------------------------------------------------- 475
                          *                                                        

consensus_11786#0      CCCCTCACTGCCCGTCTTTTTAAACGTGGTAATGGGGAAACCCCTGGGGGTCCCAACTTA 600
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      AATGGCTTTGAAAAAATTCCCCTTTTGCCCAGTTGGCGAATAAGCAAAAAGCCCCCCCAG 660
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      ATGGCCTTCCAAAATTTGCCCCCCTAATTGGATATGGGCACCCCCTTTCCGGCCCTTAAA 720
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      CCCGGGGGGTGGGTGGTTCCCCGCAAGTACCGTTACATTGCAAGGCCTTAACGCCGTTCT 780
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      TTTGGTTTTTTCCTTTTTTTTCGACCGTTCCGCGTTTTCCCGGAAGGTTTATATGGGGGC 840
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      TCTTTTGGGTCCCATTAAGGCTTCCGGCCCTGCCCAAAAATTTTTTGGGGAGGTTCCGTT 900
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      GGGCCCCCCCTCTAAACGTTTCCCTCTTACGGAACCCCTCTTTAAAGGGGTTTTCCAAAG 960
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      AAAAACACCATTTGGGTTTTTATAAAGGGTTCGCCTGGCTTTGTAAAAGCGTTTACAATT 1020
consensus_11786#1      ------------------------------------------------------------
                                                                                   

consensus_11786#0      ACCATTAAAAT 1031
consensus_11786#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)