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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1463 fasta sequence
[CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAATCAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTCCGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTAAAAAAAATGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAACTGGTATTACCATTTAAAAAAAAA]
[+] EMBL AK065812 [CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAATCAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTCCGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCTCGACGTCCTCGAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGG ]
[+] EMBL OSYK29 [ GAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTNGNNGGCGACACGGTCCTCGGCNGNGCCCCGGAGACGCTGGAGAACGNCGTNTNGCCGGTNTCCCGGAACGAGCCGTCCTTCGCNTTCCTAAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGTCTGCAACGCGCTCGTNTTCT ]
[-] EMBL AW070001 [ ggCAGGTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCTGGGTGAGCTGGGGTTCAGGTACAtcggccgcg ]
[+] EMBL BI813107 [ GTACCCTCACCTCGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGC GCGGACAAGCTGGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGAC GCAGCGTCGGCTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTAAAAAAAA ]
[+] EMBL AU071102 [ CTCGACGGCAGCGTCGG TGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAATCTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTTTTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTTATCAAGCGTGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAACTGGTATTACCATTTAAAAAAAAA]
[+] EMBL CF336572 [ TTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCAa ]
[-] EMBL CF336573 [ TGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCATTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCAaa ]
consensusID : consensus_11787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence
[CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCG-GCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC]
[+] EMBL CB667654 [CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCGTCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCCTCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCGGGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATCTCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCG GCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCGGGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCGCGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGCGTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC]
[+] EMBL CF322425 [ TTCGTCTTCCTCATCGCCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAGTGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCATCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGNGCGCCGGCGTCGGCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACTACCCACTCCGGAGCGCCCACTTCGACAAGTACGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11787#0 CTCGGGCGGCGGCGGCAATGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCG 60
consensus_11787#1 ------------CGGCACTGGCGGAAGAGGGGAGGAGCGGCGGCGTCGCCGGAGACGGCG 48
***** ******************************************
consensus_11787#0 TCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCC 120
consensus_11787#1 TCCGGGTGTGCGTCACCGGAGGCGCCGGCTTCATCGCCTCGTGGCTCGTGAAGAAGCTCC 108
************************************************************
consensus_11787#0 TCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCG 180
consensus_11787#1 TCGAGAGAGGCTGCATCGTCCATGCCACGCTGCGAAGCATGGGAGATGAGGAGAAGGCCG 168
************************************************************
consensus_11787#0 GGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATC 240
consensus_11787#1 GGCTGCTCCGGCGGCTCGTCCCCGGCGCGGCGGAGCGGCTGCGGCTGTTCGAGGCCGATC 228
************************************************************
consensus_11787#0 TCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCG 300
consensus_11787#1 TCTTCGACGCCGCCACCTTCGCGCCGGCGATCGCCGGCTGCCAGTTCGTCTTCCTCATCG 288
************************************************************
consensus_11787#0 CCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAG 360
consensus_11787#1 CCACGCCGTACGGGCTGGAGGCCTCCAACTCCAAGTACAAGAACACGGCGGATGCGGCAG 348
************************************************************
consensus_11787#0 TGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCA 420
consensus_11787#1 TGGACGCGGTGCGCGAGATCCTCCGGCAATGCGCGGAATCCAAGACGGTGAAGCGCGTCA 408
************************************************************
consensus_11787#0 TCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCG 480
consensus_11787#1 TCCACACCGCCTCGATATCCACCGCCTCGCCGTTGATCGACGTCCCCGGCGCCGGCGTCG 468
************************************************************
consensus_11787#0 GCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACT 540
consensus_11787#1 GCGCCGCCGGGTACAGGGACTTCATCGACGAGTCCTGCTGGACTCCGCTCGACGTCGACT 528
************************************************************
consensus_11787#0 ACCCACTCCGGAGCGCCCACTTCGACGTGATCTCTCCTCCTCTGTTCTTCCTCCTCCAAT 600
consensus_11787#1 ACCCACTCCGGAGCGCCCACTTCGAC---------------------------------- 554
**************************
consensus_11787#0 CAAGAACACGATGAAGCAAAAAACAGAAGAAACCAAATTAAACATTGTTTTGCAGAAGTA 660
consensus_11787#1 -------------------------------------------------------AAGTA 559
*****
consensus_11787#0 CGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCG 720
consensus_11787#1 CGTGCTGTCGAAGATGATGTCGGAGAAGGAGCTCCTGGGCTACAACGACGGCGAGGGCCG 619
************************************************************
consensus_11787#0 GGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCG 780
consensus_11787#1 GGCGTTCGAGGTGGTCACCCTGCCGTGCGGCCTCGTCGCCGGCGACACGGTCCTCGGCCG 679
************************************************************
consensus_11787#0 CGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGC 840
consensus_11787#1 CGCCCCGGAGACGCTGGAGAACGCCGTGTCGCCGGTGTCCCGGAACGAGCCGTCCTTCGC 739
************************************************************
consensus_11787#0 GTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCACGCCGACGACGT 900
consensus_11787#1 GTTCCTGAGGCTGCTGCAGAGGCTGGTCGGGTCGGTGCCGCTGGTGCAC----------- 788
*************************************************
consensus_11787#0 CTGCGACGCGCTCGTCTTCTGCATGGATCAGCCGTCGCTCGCCGGCCGCTTCCTCTGCTC 960
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 CGCCGCCTACCCGACCATCCACGACATCGTCGAACACTTCGCCGCCAAGTACCCTCACCT 1020
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 CGACGTCCTCAAAGAGCCGGAGAGGGAGGTGGCGAGGGTGCAGCCGGCGGCAGACAAGCT 1080
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 GGGTGAGCTGGGGTTCAGGTACAAGTACGGCATGGAGGAGATACTCGACGGCAGCGTCGG 1140
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 CTGCGCGGCGAGGCTGGGTTACATCGACGCAGCCAAGCTCAGGCCGCAGGAAGGATGAAT 1200
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 CTGCTACAGATTTGCAGGATGAAGAAGATGGATGATATTTGTTCGGTTTTGAACAAGTTT 1260
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 TTGGTGTTTGTTTGTAATCTCATGTGTTCTGAATACCTCTCTCATGTATCACATGACGCA 1320
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 TTTCTGCGTCAGAGAACGATATTAATAAGTACTCCGTGGAGCTCGCTAGGCACTTGAGTT 1380
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 AAAAAAAATGTTTCATTCGGTAATTCGGGCTAATTTGCTATTGTTAGCACAAGCCTGAAC 1440
consensus_11787#1 ------------------------------------------------------------
consensus_11787#0 TGGTATTACCATTTAAAAAAAAA 1463
consensus_11787#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||