These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 963 fasta sequence [GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA-CCATGTAACATTGTAGCAAAAAA] [-] EMBL CB649033 [GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTgg ] [+] EMBL AK105845 [ CGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCAGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTA ] [-] EMBL CB651099 [ TGTTCCCGTCGGTGGTCTTTCCCGGCGCGACGGTGCAGCTCCAGGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAGGTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGGGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATGTT ] [-] EMBL CB656327 [ GGGGTGGCGGCCGGCGAGGTGGGGTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTGCGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGCGAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGGCGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCTGTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAA ] [+] EMBL BI813758 [ ACAT GTGC CCCCCTC TTGACCGA TGGAGGACCAGCTCAAGAACGT GCGGCGCTGTCGGACAAGCTCGGGTGGAGCC GCC CCGCT CCGTTCCGC CGACTTGCTCCCCGTCGTCGCTGTCGTTCGCCGTGGCGAGGGA GTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACACCCATGTAACATTGTAGCCAAAAA] [+] EMBL BI812562 [ TCGTTC CCGTGGCGAGGGA GTCGTGGAGGACCGGGAGGAGCAGCAGGCGCTGCTCCGGCTGGACGACGC GCGGCGC GCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAGGAGCAGGTACCT GCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCAGAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTTTTTTTTGTGGTGAAAACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAAA] [-] EMBL CF301430 [ TACAGAAGGATTGATGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAAA] [+] EMBL CF301431 [ TGTACCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACA CCATGTAACATTGTAGCAAAAA ] consensusID : consensus_11796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [GACACAGCCTGCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAAGAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCAGAGTTCANAATTCTAATGTTAATATTTTTGTTAG] [+] EMBL BE228425 [GACACAGCCTGCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAAGAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTGCNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGTGAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCAGAGTTCANAATTCTAATGTTAATATTTTTGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11796#0 GAGATTCCCCATCGTTCTGTTCCCGTCGGTGGTCTTCCCCGGCGCGACGGTGCAGCTCCA 60 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GGCGTTCGAGTTCCGGTACCGGATCATGGTGCACACGCTGCTCCAGGAGGGGGTCACCAG 120 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GTTCGGCGTCGTGTACTCCGGCGGCGGGGTGGGGGGCGGGGTGGCGGCCGGCGAGGTGGG 180 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GTGCGTGGCGCACGTGGTGGAGTGCGAGCGGCTCGTCGACGGCCGGTTCTTCCTCACCTG 240 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 CGTCGGCGGCGACCGGTTCCGCGTCGTCGGCGCCGTCAGGACGAAGCCGTACGTGGTCGC 300 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GAGGGTCCAGCCCCTGGCCGACGCGCCGCCCAGCCAAGAACGCGGCGGCGACGGCGGCGG 360 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 CGACATGGTGCGCCACCTCGTGGAGCGAGTGGAGGAGCAGCTCAAGAACGTGGCGGCGCT 420 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GTCGGACAAGCTCGGGTGGAGCCGGCCGCCGCTGCCGTTCCGCGCGACTTGCTCCCCGTC 480 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 GTCGCTGTCGTTCGCCGTGGCGAGGGAGGTCGTGGAGGACCGGGAGGAGCAGCAGGCGCT 540 consensus_11796#1 --------------------------------------------------GACACAGCCT 10 ** ** consensus_11796#0 GCTCCGGCTGGACGACGCGGCGGCGCGGCTGGCGCGAGAGGGGAGGTACCTGGAGCGGAG 600 consensus_11796#1 GCTCCGGCTGGACNACNCCGCGGCGCGGCTGGCGCGGGANGGGAAGTACCTGNAACGGAA 70 ************* ** * ***************** ** **** ******* * **** consensus_11796#0 GAGCAGGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTG 660 consensus_11796#1 GAACANGTACCTGGCCGCCATTGCGGCGATCAAGGACGCCCTCGGTGGCCACCTCTACTG 130 ** ** ****************************************************** consensus_11796#0 CAACGACAAGTAGAGACGACGACGATCGAGTGAGTACTCCGTTAATAACCGGCCACTGGT 720 consensus_11796#1 CNACGACAAGTNNAGACNACGACGATCGAATGAGTACTCCGTTAATAACCGGCCACTGGT 190 * ********* **** *********** ****************************** consensus_11796#0 GAGGACTCCCATGGCCATAGGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCAGAATTCA 780 consensus_11796#1 GAGGACTCCCATGGCCATANGTTTCTTTGGTTTTGTTTGGCTTCTCTGCTTCACAATTCA 250 ******************* ********************************* ****** consensus_11796#0 GAGTTCAGAGTTCTAATGTAAATATTTTTGTAAGTTCCTCGAGCTGTTTTTTGTGGTGAA 840 consensus_11796#1 GAGTTCANAATTCTAATGTTAATATTTTTGTTAG-------------------------- 284 ******* * ********* *********** ** consensus_11796#0 AACTTTGCATTGAGTAGATGTATTTAGGAGTACTTCATAATGTACAGAAGGATTGATGTA 900 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 CCATCTGCAGGTTACTCATCAGGTGATAAATAAGAGTACACCATGTAACATTGTAGCAAA 960 consensus_11796#1 ------------------------------------------------------------ consensus_11796#0 AAA 963 consensus_11796#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||