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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1653 fasta sequence
[GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTACCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGCCTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTCCACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGAGCCGTCGCCGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTTCGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTTTGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTGGGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAAGCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAGCGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCTGGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGGGCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCATGGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGTGTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTTGCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGGACGGCGGCAATCGACCAACGAGGCCAATGAAGATGGGGCTGGAGATGCTTGATCGAAATCTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATATATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACTCCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATGTTTGACGCCGTTGGCTTTTTTA]
[+] EMBL AK100928 [GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTACCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGCCTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTCCACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGAGCCGTCGCCGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTTCGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTTTGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTGGGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAAGCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAGCGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCTGGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGGGCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCATGGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGTGTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTTGCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGGACGGCGGCAATCGACCAACGAGGCCAATGAAGATGGGGCTGGAGATGCTTGATCGAAATCTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATATATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACTCCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATGTTTGACGCCGTTGGCTTTTTTA]
consensusID : consensus_11797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1501 fasta sequence
[AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG]
[+] EMBL CB647162 [AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCACCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGC ]
[+] EMBL AK106547 [ TGATGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCTTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG]
[+] EMBL AK103792 [ TGGCCGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGATGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGCGGTGGAAAACCTGAGGTTCCGGTCGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCGGGACGTACATCCCCATCGTGCTGTCGCTGGCGCTGTCCCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCATCTACAACGCCATCACCGGCCTCCTCTACGTCGTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGGCATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTACCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGCCATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGGCAAGGGCAAGTCCCTCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGTCTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCAGCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTTCGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGCTGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCATCAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGCGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCACTCAATACAGCTCGTTCCG]
[-] EMBL CB647163 [ TGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAAGCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAGTCGCCGACGTCGGTGTCGGTGACGATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGCGGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCTGGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGTCCAGTTCCCCGTCGGTCTTTTCGGCGCGCTGCTGCTGTTCTCCGGAGTGGAGCTCGCGGCGGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGTGTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCTTCTTTACCTCAGGGCCGGGGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTAATTCCAATTCCATTTCACTATCATCTAAAAGAACGCCAGCCAAACATT ]
consensusID : consensus_11797#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence
[CGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGGCCCGGCGGCGGCGAACGGGAGCGGAAGCAAAACTCTTGTGTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTGAAATTGCTTGATGAGTAATGGATTTGTGCGAATTTAATTCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120646 [CGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGACGTCAACAGGGACGGCACGGCCCGGCGGCGGCGAACGGGAGCGGAAGCAAAACTCTTGTGTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTGAAATTGCTTGATGAGTAATGGATTTGTGCG ]
[+] EMBL AU094161 [ cgcnAGCGGAAGCAAAACTCTTGTNTTCATGTGTGTTCTTTTGTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTNAAATTNCTTGATGAGTAATGGATTTNTGCGAATTTAATTCCAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11797#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[GCCGCTGTGGTGGTGGTGTGGCATCGGTCGGCCATGGAACCACCATCGACCTATCTTCCTCCGTCGCCGGCCATAGGCGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGGACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAATGTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAATCCGTTTGAGATGAAAAAAAAAGCGG]
[+] EMBL AU225334 [GCCGCTGTGGTGGTGGTGTGGCATCGGTCGGCCATGGAACCACCATCGACCTATCTTCCTCCGTCGCCGGCCATAGGCGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGGACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAATGTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAATCCGTTTGAGATGAAAAAAAAAGCGG]
consensusID : consensus_11797#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[GCCGCTGATTAAAAGCCCAATCAAGCAATCATCCCTTTCAAATACAAGAACTACACCGACCAATAATCCCAGAAAAAGAAAAGGAATAAAATTCGCACAAATCCATTACTCATCAAGCAATTTCACTTTCACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGAGTTTTGCTTCCGCTCCCGTTCGCCGCCGCCGGGCCGTCGCCTTCCCTCCACCACCGCCCGCCGCCCCCCGAGCGG]
[+] EMBL AU225155 [GCCGCTGATTAAAAGCCCAATCAAGCAATCATCCCTTTCAAATACAAGAACTACACCGACCAATAATCCCAGAAAAAGAAAAGGAATAAAATTCGCACAAATCCATTACTCATCAAGCAATTTCACTTTCACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGAGTTTTGCTTCCGCTCCCGTTCGCCGCCGCCGGGCCGTCGCCTTCCCTCCACCACCGCCCGCCGCCCCCCGAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11797#0 ------------------GCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAG 42
consensus_11797#2 --------------------------------------------------------CGAG 4
consensus_11797#1 AGGATCCTATAAATCCTGCGCGGCGAGCAGAGAAGAGAAGAGACGAGCAGCGGTGATGGC 60
consensus_11797#4 ---------------------------GCCGCTGATTAAAAGCCCAATCAAGCAATCATC 33
consensus_11797#3 -------------------------------------GCCGCTGTGGTGGTGGTGTGGCA 23
consensus_11797#0 TTTCCCACCCATGGCATCC--TCCGCCGGCGACCCGCTCCTCTCCGG-CGAGGCCGGCGA 99
consensus_11797#2 TTTCCCACCCATGGCATCC--TCCGCCGGCGACCCGCTCCTCTCCGG-CGAGGCCGGCGA 61
consensus_11797#1 CGGCGTGGGCGTGGTAGTAGATCCGGAGGCGGTGGGCGGCGGTGGAGATGGAGGTGGAGA 120
consensus_11797#4 CCTTTCAAATACAAGAACT------ACACCGACCAATAATCCCAGAAAAAGAAAAGGAAT 87
consensus_11797#3 TCGGTCGGCCATGGAACCA------CCATCGACCTATCTTCCTCCGTCGCCGGCCATAGG 77
* **
consensus_11797#0 CGGCCGC-CGCAGGTTCGTCCCGTCCACCATAC----GGCTCAAGAC-----------GT 143
consensus_11797#2 CGGCCGC-CGCAGGTTCGTCCCGTCCACCATAC----GGCTCAAGAC-----------GT 105
consensus_11797#1 TGGGCGGATGAAGGAAGGGTTGGCGCGGCGGGC----GGTGGAAAACCTGAGGTTCCGGT 176
consensus_11797#4 AAAATTCGCACAAATCCATT--ACTCATCAAGC----AATTTCACTT------------T 129
consensus_11797#3 CGACAGATCAAGGGTTCATCACGATGATGATGATGTAGATACACGAGAGGAAAGCAAGGG 137
consensus_11797#0 CGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGG-GCACCTACATCCCCATCGTG 202
consensus_11797#2 CGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGG-GCACCTACATCCCCATCGTG 164
consensus_11797#1 CGGTGTGGGGCGAGGTGAACGGCGCCATGGGCGACCTCG-GGACGTACATCCCCATCGTG 235
consensus_11797#4 CACTTCAAGAACACAACATGAACACAAAAGATGAACAAAAGAACACACATGAACACAAGA 189
consensus_11797#3 ACCTGAGAATGTTCCTGGACAGCATACGGAACGAGCTGTATTGAGTGATTATTTATGAAT 197
* * ** * * *
consensus_11797#0 CTGGCGCTGTCGCTCGC-GTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCT 261
consensus_11797#2 CTGGCGCTGTCGCTCGC-GTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCT 223
consensus_11797#1 CTGTCGCTGGCGCTGTC-CCGGCAGCTGGACCTCGGCACCACCCTCGTCTTCACCGGCAT 294
consensus_11797#4 GTTTTGCTTCCGCTCCC-GTT-CGCCGCCGCCGGGCCGTCGCCTTC-CCTCCACCACCGC 246
consensus_11797#3 GTTTGGCTGGCGTTTTTTGAGATGATAGTGAAATGGAATTGGAATTACAAAT-CCGTTTG 256
* *** ** * * * **
consensus_11797#0 CTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTC 321
consensus_11797#2 CTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTC 283
consensus_11797#1 CTACAACGCCATCACCGGCCTCCTCTACGGCGTCCCCATGCCCGTCCAGCCCATGAAGTC 354
consensus_11797#4 CCGCCGCCCCCCGAGCGG------------------------------------------ 264
consensus_11797#3 AGATGAAAAAAAAAGCGG------------------------------------------ 274
* ***
consensus_11797#0 CATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGG 381
consensus_11797#2 CATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCGCAGATCATGTCCGCTGG 343
consensus_11797#1 CATCGCCGCCGCCGCCCTCGCCGACCCCTCCTTCGCCATCCCGGAGATCATGGCCGCCGG 414
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CCTCGCCGTCGCCGCCATCCTCCTCTTCCTCGGCGTCACCGGCCTCATGACCACCCTCTA 441
consensus_11797#2 CCTTGTCCTCGCGCTCGCC-------------GCGCTACTG--TTCATAATC-CTCGCCA 387
consensus_11797#1 CATCCTCACCGCCGCCTTCGTCCTCTTCCTCGGCCTCACCCGCCTCATGGACCTCGTCTA 474
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CCGCCTCCTCCCGCTCCCCGTCGTGCGCGGCGTCCAGCTCTCGCAGGGCCTCTCCTTCGC 501
consensus_11797#2 CCGGCTCCGGCGAC-----GACGAGGACGTCAAC-AGGGACGGCACGGCCCGGCGGCGGC 441
consensus_11797#1 CCGCTTCGTCCCGCTCTCCGTCGTGCGTGGCATCCAGCTCGCCCAGGGCCTCAACTTCGC 534
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CTTCACCGCCGTCAAGTACATCCGCTACGTGCAGGACTTCTCCCGTTCCTCCTCTGCTTC 561
consensus_11797#2 GAACGGGAGCGG-AAGCAAAACTCTTGTGTTCATGTGTGTTC----TTTTGTTCATCTTT 496
consensus_11797#1 CATGGCCGCCGTCAAGTACATACGCTACGAGCAGGACTTGGG-----CAAGGGCAAGTCC 589
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CACCTCCGTGCCGCGCCCCCTCCTCGGCCTCGACGGCCTTGTCCTCGCGCTCGCCGCGCT 621
consensus_11797#2 TGTGTTCATGTTGTG-----TTCTTGAAGT-GAAAGTGAAATT-----GCTTGATGAGTA 545
consensus_11797#1 C----TCGGGCGGCGCCCCTGGGTGGGCCTCGACGGCCTCGTGCTCGCCATCGCGGCGGT 645
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 ACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGAGGA-------CGTCAACAGGG 674
consensus_11797#2 ATGGATT----TGTGCGAATTTAATTCCAAAAAAAAAAAAAA-------AAAAA------ 588
consensus_11797#1 CTGCTTCATCGTGCTCGTCAACGGGGCCGGAGAAGAGCAGGAGCAGCGTCAGCAGCAGCA 705
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 ACGGCACGAGCCGTCGC--CGTCGCTCCTGCAGCCGCGTCCCGGCGGCGCTAATCGTGTT 732
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GCAGCAGCAACAGTGGTGGCGTCGTCGGTTGGGTTCCGTTCCTTCGGCTGTGGTGGTGTT 765
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CGCGCTCGGCTTGGTGCTCTGCTTCGTTCGTGATCCGTCCATCCTGCAGGATCTCCGCTT 792
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 CGTGGTGGGCGTTGCGTTCGCGGTGGCGCGTCACCCAGCGGCGGTGAGGGAGCTGCGCGC 825
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 TGGGCCGGCGCCGTTGGGGCTGGTCAAGATAACCTGGGACGATTTCAAGATCGGGTTCTG 852
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 TGGGCCGTCGCGGATGCGGGTGGTGCACATCTCTCGGGAGGCGTGGAAGCAAGGGTTCAT 885
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GGAGGGCGCCGTGCCGCAGCTCCCGCTGTCCGTGCTGAACTCGGTGATCGCCGTGTGCAA 912
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 CAAGGGCGCGCTGCCGCAGATCCCGCTGTCGGTGCTCAACTCGGTGGTGGCGGTGTGCAA 945
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GCTGTCGTCGGACCTGTTCCCGGAACGGGCCGAGCTCTCGCCGGCGCGGGTGTCGGTGAG 972
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GCTGACGCGCGACCTGTTCCCGGAGCGGAAGGAG---TCGCCGACGTCGGTGTCGGTGAC 1002
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CGTGGGGCTCATGAATTTCGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGC 1032
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GATGGGAGCCATGAACCTGGTGGGGTGCTGGTTCGGCGCCATGCCGTGCTGCCACGGCGC 1062
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GGGCGGGCTGGCGGGGCAGTACCGGTTCGGCGGCCGGACCGGCGCGTCCGTGGTGTTCCT 1092
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GGGAGGGCTGGCGGGGCAGTACAAGTTCGGGGGGAGGAGCGGCGGGTGCGTGGCGGCGCT 1122
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GGCCATCGGCAAGCTGGCGCTCGGGCTGGTGTTCGGCAACTCGTTCGTGACGATCCTGGG 1152
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GGGCGTGCTGAAGCTGGCGCTGGGCCTGCTGCTGGGCGGCTCCATGCTGCGTGTCCTCGT 1182
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GCAGTTCCCGATCGGGATACTGGGCGTCATGCTGCTCTTCTCCGGGATCGAGCTCGCCAT 1212
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 CCAGTTCCCCGTCGGTCTTCTCGGCGCGCTGCTGCTGTTCGCCGGAGTGGAGCTCGCGGC 1242
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GGCGTCGCGCGACATGGGGAGCAAGCAGGAGTCGTTCGTCATGCTGGTCTGCGCCGGCGT 1272
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GGCGGCGAGGGACATGTCCACGAGGGCGGAGGCGTTCGTGATGCTGCTGTGCACGGCGGT 1302
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GTCGCTCACAGGCTCGAGCGCCGCGCTGGGCTTCATCTCCGGAATCGTGCTGTACCTGTT 1332
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 GTCGCTGGTGGGCTCCAGCGCCGCGCTCGGCTTCCTCTGCGGGATGCTCGCCCACGCCCT 1362
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 GCTACGCCTGAGGGATTTGGAGTGGGATATCAGAGGACTGCTCGGTCGCTGGGCCGCGGG 1392
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 TCTCTACCTCAGGGCCTGCGCGCTCAGGGAACGCATCGTCTCATCTCAAACGGATTTGTA 1422
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 ACGGCGGCAATCGACCAACGAGGCCAATGAAGATGG-GGCTGGAGATGCTTGATCGAAAT 1451
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 ATTCCAATTCCATTTCACTATCATCTCAAAAAACGCCAGCCAAACATTCATAAATAATCA 1482
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CTTGAGAACATCTGTTGATTTGAGATTTTGAGTGTGGTGTGAATTGTTCGAGCGAATATA 1511
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 CTCAATACAGCTCGTTCCG----------------------------------------- 1501
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 TATAGTATCAACATGCATAGCGGATAGCCACGAGTGATTGAATTTCTGAATGGAGTAACT 1571
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 ------------------------------------------------------------
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 CCACATAATCGCCCAAACTTTCAAACCAACTACTCCCTCTGTCCTTAAACATCTTAAATG 1631
consensus_11797#2 ------------------------------------------------------------
consensus_11797#1 ------------------------------------------------------------
consensus_11797#4 ------------------------------------------------------------
consensus_11797#3 ------------------------------------------------------------
consensus_11797#0 TTTGACGCCGTTGGCTTTTTTA 1653
consensus_11797#2 ----------------------
consensus_11797#1 ----------------------
consensus_11797#4 ----------------------
consensus_11797#3 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||