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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1492 fasta sequence
[CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCC-GGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG-CG-CA-GGTG-CG-CG-CGGCCA--TCG-CGGA-GAAGGCGGCGACGTCCATCTCCA-TTGCTCATCA-CGACCTGCACGATGCCTCCGA-TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG-CAAGGTAATTAATTAATTGTAGGAAA-CGATGAACA-CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA]
[+] EMBL AK099892 [CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGA GGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCC GGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACA CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCA ]
[+] EMBL OSC104291 [ CATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTNACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTNTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGG ]
[+] EMBL CB655198 [ GCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGC ]
[+] EMBL OSS15611A [ TCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCC CTNCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGA GTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCNACCTGGGCTCCGCCTGCAAGGGGTTCTCCNCCGCCGTCGCGCCCAnc ]
[-] EMBL CB655199 [ GGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTCCGACCTGGGCTCCGCCTGCGAGGGGTTATCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCTCCGGGCTACGTGGACCCCTTTTTCCTCCGCACCGGCATCGTGTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTTGAGGCCATCACCGGTTCGCCGGCCGCCGGGATACCCGGCCC GGATGTCGGCTCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGTTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGGGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAAGCGATGAACAGCTGCTTAGGAAGGAGCTGGAATCAATTGATTAGAGTGATGAAAT ]
[+] EMBL BI808430 [ CGCC GCCGCCGGGATACCC GCCC GGAT GCGGC CC GCGGGGCCAACCTCACGGC C GTT CT CCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGC GCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGC CAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATT CAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACC CTGCTTACGAAAGAACTGGAATC ATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAAaaaaaaa ]
[+] EMBL AU174083 [ CGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACA CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTNTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA]
[+] EMBL BM420206 [ atTGGTCGCCACGGTGTCGTCGNCGGCCACTTCGCCGGATGAAGGCGGCGACGTCCATCTCCACTTGCTCATCACCGACCTGCACGATGCCTCCGAGTTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCCCAGGTAATTAATTAATTGTAGGAAA CGATGAACACCTGCTTAGGAAAGAACTGGAATCNATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTNTAAAaaaaaaa ]
consensusID : consensus_11800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CGACGCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCCCGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGATGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAAAAAAAAAAAAAA]
[+] EMBL AU092079 [CGACGCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCCCGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGATGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11800#0 CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCC 60
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 ATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTC 120
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 CTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCC 180
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 GACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGT 240
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 TCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCG 300
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 ACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGC 360
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 GGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGC 420
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 AGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGC 480
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 GGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCAC 540
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 CCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTC 600
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 CTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCT 660
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 CTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTC 720
consensus_11800#1 ------------------------------------------------------------
consensus_11800#0 CACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGAC 780
consensus_11800#1 --------------------------------------------------------CGAC 4
****
consensus_11800#0 GGCCGTGGCCTGGGCGCGCGGCTCT-GCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGC 839
consensus_11800#1 GCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCC 64
* *************** ***** * ***** ********** *** **** * * *
consensus_11800#0 CGCCGT-CGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCC 898
consensus_11800#1 CGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCC 124
****** ** ********** ***************************************
consensus_11800#0 TCCGCACCGG-CATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTC 957
consensus_11800#1 TCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTC 184
********** *************************************************
consensus_11800#0 GAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGGCGGCGCCGGCGGG 1017
consensus_11800#1 GAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGG 244
********************************************** *************
consensus_11800#0 GGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCC 1077
consensus_11800#1 GGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCC 304
*************************************** ********************
consensus_11800#0 GACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCC 1137
consensus_11800#1 GACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCC 364
********************************* **************************
consensus_11800#0 GTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCC 1197
consensus_11800#1 GTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCC 424
************************************************************
consensus_11800#0 ATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCC 1257
consensus_11800#1 ATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCC 484
************************************************************
consensus_11800#0 GATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAG 1317
consensus_11800#1 GATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAG 544
************************************************************
consensus_11800#0 TTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGA 1377
consensus_11800#1 TTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGA 604
************************************************************
consensus_11800#0 TGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGT 1437
consensus_11800#1 TGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGT 664
************************************************************
consensus_11800#0 AAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA 1492
consensus_11800#1 AAAAAAAAAAAAAAA---------------------------------------- 679
*** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||