These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1492 fasta sequence [CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCC-GGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG-CG-CA-GGTG-CG-CG-CGGCCA--TCG-CGGA-GAAGGCGGCGACGTCCATCTCCA-TTGCTCATCA-CGACCTGCACGATGCCTCCGA-TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG-CAAGGTAATTAATTAATTGTAGGAAA-CGATGAACA-CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA] [+] EMBL AK099892 [CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCCATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGA GGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCC GGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACA CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCA ] [+] EMBL OSC104291 [ CATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTCCTCCTCCTCCGTNACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCCGACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGTTCTCCTCCTCCTCAGCAAGAGCTGCCGTTNTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGG ] [+] EMBL CB655198 [ GCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCGACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGCGGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGCAGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGCGGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCACCCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCTCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGGATGGCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGC ] [+] EMBL OSS15611A [ TCCTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCC CTNCTGCCATGGCGCCACCGCATGCGCGTCGTCCACGA GTGGCCGGCGCGCTCGAGCACCTCCACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTGCNACCTGGGCTCCGCCTGCAAGGGGTTCTCCNCCGCCGTCGCGCCCAnc ] [-] EMBL CB655199 [ GGCGACGTGTCGGCGTCCAACGTGCTCCTCGACGGCCGTGGCCTGGGCGCGCGGCTCTCCGACCTGGGCTCCGCCTGCGAGGGGTTATCCGCCGCCGTCGCGCCCACCAGGGCGGCCGTCGGCTCTCCGGGCTACGTGGACCCCTTTTTCCTCCGCACCGGCATCGTGTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTTGAGGCCATCACCGGTTCGCCGGCCGCCGGGATACCCGGCCC GGATGTCGGCTCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGTTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGGGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAAGCGATGAACAGCTGCTTAGGAAGGAGCTGGAATCAATTGATTAGAGTGATGAAAT ] [+] EMBL BI808430 [ CGCC GCCGCCGGGATACCC GCCC GGAT GCGGC CC GCGGGGCCAACCTCACGGC C GTT CT CCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGC GCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGC CAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATT CAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACC CTGCTTACGAAAGAACTGGAATC ATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTCTAAAaaaaaaa ] [+] EMBL AU174083 [ CGGAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGG CG CA GGTG CG CG CGGCCA TCG CGGA GAAGGCGGCGACGTCCATCTCCA TTGCTCATCA CGACCTGCACGATGCCTCCGA TTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGG CAAGGTAATTAATTAATTGTAGGAAA CGATGAACA CTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTNTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA] [+] EMBL BM420206 [ atTGGTCGCCACGGTGTCGTCGNCGGCCACTTCGCCGGATGAAGGCGGCGACGTCCATCTCCACTTGCTCATCACCGACCTGCACGATGCCTCCGAGTTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCCCAGGTAATTAATTAATTGTAGGAAA CGATGAACACCTGCTTAGGAAAGAACTGGAATCNATTGATTAGAGTGATGAAATACTGGAATGTAAATATTGATTTNTAAAaaaaaaa ] consensusID : consensus_11800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CGACGCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCCCGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGATGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAAAAAAAAAAAAAA] [+] EMBL AU092079 [CGACGCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCCCGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCCTCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTCGAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGGGGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCCGACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCCGTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCCATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCCGATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAGTTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGATGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11800#0 CTTTGCATTTCTTTCCCAAACTGAAGAAGCTAAGCTTAGCGCGGCGCCATGGACGTGGCC 60 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 ATGGCGCTCGCCGTCCTCTTCTTCTGCCTCCTCCTCCTCTCCTCCGCCGCCATCACCTTC 120 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 CTCCTCCTCCGTCACTGCCTCTCCGGGCTCCGGCGCCGCCACCGTGCTGCCGCCGCCGCC 180 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 GACGTCGACGCCGAGGCCGCAGAAGGCGGGGCGGGAGCACGACAGCTGATGCCGCCGTGT 240 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 TCTCCTCCTCCTCAGCAAGAGCTGCCGTTGTTGCGGCCGGCGGCGAAGTTGGTGCCGTCG 300 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 ACGAAGGAGGAGGGGGAGCCTTGGAAGCTGACGTGGCGGGAGGTGGAGGCGCTCACCGGC 360 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 GGCTTCGACGAGGCGGCGGTGGTGGGGCGAGGTGGCTCCAGCACGGTCTACCTGGCAAGC 420 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 AGCTGCAGGGTCGCCGTCGTCTCGCCGCCCGTGGCGGTGAAGGTGCACCGGTGGTGCGGC 480 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 GGCGAGCGGTGGCTGCGCGCGTTCCGGCAGGAGCTCGACCTGCTCCGCCGCCTCCGCCAC 540 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 CCCCACATCGTCTCCCTCCTCGCCTACTCCGACGACCACGAGGAGGGAGGTGCACTGGTC 600 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 CTGGAGTACCTCTCCGGCGGCACCCTCGCCGACCGCCTCCACGGCGGCGCATCGCCGCCT 660 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 CTGCCATGGCGCCACCGCATGCGCGTCGTCCACGACGTGGCCGGCGCGCTCGAGCACCTC 720 consensus_11800#1 ------------------------------------------------------------ consensus_11800#0 CACGACGGCGCGCCTCCGGTGGTGCACGGCGACGTGTCGGCGTCCAACGTGCTCCTCGAC 780 consensus_11800#1 --------------------------------------------------------CGAC 4 **** consensus_11800#0 GGCCGTGGCCTGGGCGCGCGGCTCT-GCGACCTGGGCTCCGCCTGCGAGGGGTTCTCCGC 839 consensus_11800#1 GCCCGTGGCCTGGGCGCCCGGCTTTTGCGACTTGGGCTCCGCTTGCAAGGGTTCTCCGCC 64 * *************** ***** * ***** ********** *** **** * * * consensus_11800#0 CGCCGT-CGCGCCCACCAGGGCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCC 898 consensus_11800#1 CGCCGTTCGGGCCCACCAGGCCGGCCGTCGGCTCGCCGGGCTACGTCGACCCCTTCTTCC 124 ****** ** ********** *************************************** consensus_11800#0 TCCGCACCGG-CATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTC 957 consensus_11800#1 TCCGCACCGGGCATCGTCTCCAAGAAGTCCGACGTCTACAGCTTCGGCGTGCTTCTGCTC 184 ********** ************************************************* consensus_11800#0 GAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGGCGGCGCCGGCGGG 1017 consensus_11800#1 GAGGCCATCACCGGCTCGCCGGCCGCCGGGATACCCGGCCCGGATGNCGGCGCCGGCGGG 244 ********************************************** ************* consensus_11800#0 GGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGGAGGGGGTGGACGGGCTCGCC 1077 consensus_11800#1 GGCAACCTCACGGCGCGGTTGCTGCCGCGTGTCAGGACGNAGGGGGTGGACGGGCTCGCC 304 *************************************** ******************** consensus_11800#0 GACCGCCGGCTGGGCGACGACTACGACGCGGCGGAGGCCGGCGACGTGGCGAGGATCGCC 1137 consensus_11800#1 GACCGCCGGCTGGGCGACGACTACGACGCGGCGNAGGCCGGCGACGTGGCGAGGATCGCC 364 ********************************* ************************** consensus_11800#0 GTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCC 1197 consensus_11800#1 GTCGAGTGCCTGGCGGCGCAGCCGGGCCTCCGGCCGACGATGGCGCAGGTGCGCGCGGCC 424 ************************************************************ consensus_11800#0 ATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCC 1257 consensus_11800#1 ATCGCGGAGAAGGCGGCGACGTCCATCTCCATTGCTCATCACGACCTGCACGATGCCTCC 484 ************************************************************ consensus_11800#0 GATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAG 1317 consensus_11800#1 GATTCCACATGATGGATATCGGATTGCAGTTTATTTTTATTTTGTAGATGATTTACTTAG 544 ************************************************************ consensus_11800#0 TTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGA 1377 consensus_11800#1 TTATTTTTGTGTCTGTGTGTTTTATTATTGGCAAGGTAATTAATTAATTGTAGGAAACGA 604 ************************************************************ consensus_11800#0 TGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGT 1437 consensus_11800#1 TGAACACTGCTTAGGAAAGAACTGGAATCAATTGATTAGAGTGATGAAATACTGGAATGT 664 ************************************************************ consensus_11800#0 AAATATTGATTTCTAAATTAAGAGTGCAGCTTGTGCATTTGGATGCTATAAAAAA 1492 consensus_11800#1 AAAAAAAAAAAAAAA---------------------------------------- 679 *** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||