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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCCATGGTCTTTATACATACTGATGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCAATGGAAACATATAGCGGTAAGACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTTGGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTTTTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAAATTTTAGCTACCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTGGTTTGTCCTCTTAGCTAGAGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGCATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATATACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTAACATGCTACATACATAGTCATAT]
[+] EMBL CA761645 [TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCCATGGTCTTTATACATACTGATGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCAATGGAAACATATAGCGGTAAGACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTTGGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTTTTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAAATTTTAGCTACCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTGGTTTGTCCTCTTAGCTAGAGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGCATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATATACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTAACATGCTACATACATAGTCATAT]
consensusID : consensus_11824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 524 fasta sequence
[TTTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA-TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA-TGGAGTATATATTATACATGATTTATTAATATATCAGAACT-GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT-GCCGATCAACCTCACCATTTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG-A-CCTCTTGTGCTGGGGCAGGTAGTCCATGGCGTCTATGTA]
[-] EMBL CA765179 [TTTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCAGTGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTA ]
[-] EMBL BI804141 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCATTTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCG CTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG A CCTCTTGTGCTGGGGCAGGTAGT CATGGCGTCTATGTA]
[-] EMBL BI803785 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTGTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTACTGTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGAGTGGAGTATATATTATACATGATTTATTAATATATCAGAACTGGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTG GCCGATCAACCTCACCATTTGGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCG GTCGGCTATGCGGCTGTGGCCGTGCTG GTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGACG CG CTCCTCCTCGTCGAA CCTCTTGTGCTGGGGCAGGTAGTCCATGG GTCTATGTA]
[-] EMBL BI803838 [ TTTTTAAGAGAAATATATAGAGTGATCTATACGTTTCTTACCACACTG CACTTATTCAAAACACGTACGCC TGGCTAGGAGGGAGCACTGAACACATATGGCGTATGCA TGCAGTAGCTACTAC GTCCCAAAATATAGCAACTTTTAGCTAAATGCTTATA TTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAAC GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCA TTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGG TGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCG CG CG CG CTCCTCCTCGTCG A CCTCTTGTGCTGGGGCAGGTAGTCCATGGC TCTATG ]
[-] EMBL BI800947 [ tttttttttTAGCAACTTTTAGCTAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTTGGCCGATCAACCTCACCA TTTGTCCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCCGCCTCCTCCTCGTCG ACCCTCTTGTGCTGGGGCAG ]
[-] EMBL CA765720 [ ttaaAGCTTAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTA ]
[+] EMBL OSA298284 [ TAAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGATCCTTAAAGGTATCCTCCTT GCCGATCAACCTCACCATTTTGACCACCGCCTTCTCCCCAGTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCGACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCGTGCTCCTT ]
[-] EMBL CB096223 [ AAATGCTTATATTTTGTTACGGA TGGAGTATATATTATACATGATTTATTAATATATCAGAACT GGTATACGACGCCCTTATTTTTATCCCCCTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11824#0 TTTTTTTTTTTTTTTTTTTTAGCTAAATGCTTATATTTTGTTACGGATGGAGTATATATT 60
consensus_11824#1 ---------------------------------TTTTTTAAGAGAAATATATAGAGTGAT 27
* **** * ** * * *
consensus_11824#0 ATACATGATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGG 120
consensus_11824#1 CTATACG-TTTCTTACCACACTGCCACTTATTCAAAACACGTACGCCTTGG-----CTAG 81
** * * *** *** * * *** * * ** * ** ** *
consensus_11824#0 TCACGATCCTTAAAGGTATCCTCCTTGCCGAT-CAACCTCACCCATGGTCTTTATACATA 179
consensus_11824#1 GAGGGAGCACTGAACACATATGGCGTATGCATGCAGTAGCTACTACTGTCCCAAAATATA 141
** * * ** ** * * ** ** * * * *** * * ***
consensus_11824#0 CTGA-TGGTAGCTTTTAGGGGACTTTGTTCACTTGAAAGTGTGAATAAAACTAATCTGCA 238
consensus_11824#1 GCAACTTTTAGCT---AAATGCTTATATTTTGTTACGGATG-GAGTATATATTATACATG 197
* * ***** * * * * ** ** ** ** ** * * **
consensus_11824#0 ATGGAAACATATAGCGGTAA-GACATCTCATTCCTCCTTTTCTTTTTCTTTTGTCTTCTT 297
consensus_11824#1 ATTTATTAATATATCAGAACTGGTATACGACGCCCTTATTTTTATCCTCCTGGTCACGAT 257
** * ***** * * * * ** * ** *** * * * *** *
consensus_11824#0 GGGCAGAAGTGGAACATATCTTTGTAAGTTCTGTTTTTCTTCCATACGAATCAGTTACTT 357
consensus_11824#1 CCTTAAAGGTATCCTCCTTGCCGATCAACCTCACCATTTTGTC-CACCGCCTTCTCCCCA 316
* * ** * * * ** * * ** * *
consensus_11824#0 TTCTTAAAACATCACATGAAGTCATCCTAAACTATTTAGAACTGAA----ATTTTAGCTA 413
consensus_11824#1 GTCGCCGCCTCGTACTTCTTTTCGAGATAAGCCGTTCCAACTTGAACAGCGCCGAAGTCG 376
** ** * ** *** * ** * **** **
consensus_11824#0 CCATTGACCTATGCTGTGGCCATTGGACCTTTGGCATGCTATTTTTTGTCCCTTAATTTG 473
consensus_11824#1 ACGTACTCCACCGCGTCGGCTATGCGGCTGTGGCCGTGCTGCGTCTCCTCCTCTTTCCCG 436
* * ** ** *** ** * * * * * **** * * *** * *
consensus_11824#0 -GTTTGTCCTCTTAGCTAG-AGGCACTATAGCCAGGTTCTCTCTTTAGGAGCACTAATGC 531
consensus_11824#1 TGCTCCTTCGCCTTGCCGGTATCCGCCGCCGCC-GCCTCCTCCTCGTCGACCTCTTGTGC 495
* * * * * * ** * * * * *** * ** ** ** * ** ***
consensus_11824#0 ATTTTGGGGAAGTAGGGTATCTCTCCTTAGGTGTGCGAATTCAGGCACTAAAAACCATAT 591
consensus_11824#1 ---TGGGGCAGGTAGTCCATGGCGTCT-ATGTA--------------------------- 524
* *** * **** ** * ** * **
consensus_11824#0 ACTTCTGTTATAGNTTTTTTTCTACAATTGAAATAGTTATTGATAACAGAAATATGCTTA 651
consensus_11824#1 ------------------------------------------------------------
consensus_11824#0 ACATGCTACATACATAGTCATAT 674
consensus_11824#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||