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Oryza sativa
cluster # 11831 cluster # 11831       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11831#0 length = 1380 sequences # 4  
consensus_11831#1 length = 548 sequences # 1  
consensus_11831#2 length = 438 sequences # 1  
consensus_11831#3 length = 400 sequences # 2  
consensus_11831#4 length = 244 sequences # 1  

consensusID : consensus_11831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1380
fasta sequence
                              [GCATCTAAAGCTGGAGAGGAAATAAAAGTTGCCTCACAGTTGCGCAAGTTTGCATTCAATGATCTAAAATGTGCCACCCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGGGTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTTCCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAACCATCTATTCAGAAGGTCTCTTCCTCTCCCTTGGTCCATCAGAATGAAGGTTGCTCTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAACATCTAATATACTGCTAGATGCTGATTACAATGCAAAACTCTCAGATTTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACC-GGGACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAG------AATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGGAGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGTTTTAACTGGATGCTGATAGACCCTTTTCTATATATTTTTCCTCCAAAGTAAGCTAGCTTTGGT]

[+] EMBL AK064216             [GCATCTAAAGCTGGAGAGGAAATAAAAGTTGCCTCACAGTTGCGCAAGTTTGCATTCAATGATCTAAAATGTGCCACCCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGGGTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTTCCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAACCATCTATTCAGAAGGTCTCTTCCTCTCCCTTGGTCCATCAGAATGAAGGTTGCTCTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAACATCTAATATACTGCTAGATGCTGATTACAATGCAAAACTCTCAGATTTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTACGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACC GGGACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTCAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAG      AATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGGAGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGTTTTAACTGGATGCTGATAGACCCTTTTCTATATATTTTTCCTCCAAAGTAAGCTAGCTTTGGT]
[+] EMBL C98382               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAACATCTAATATACTGCTAGATGCTGATTACAATGCAAAACTCTCAGATTTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACCGGGGACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE040343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCCTGTCTCAACC GGGACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCGAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGGTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGGCGCATAATCCTGGTCTGGTTGGTGGAACTTGGTT  GGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAAATGATCTTTCCTGTAGATTGACATGGGAAAATGGATATAGGTGAAAAGGAGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGGTTAAACTGGATGCTGATAGACCCTTT                                     ]
[-] EMBL CB649798             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACC GGGACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAG      AATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGGAGCTGTAGGTACCAG                                                                                            ]


>consensus_11831#0 GCATCTAAAGCTGGAGAGGAAATAAAAGTTGCCTCACAGTTGCGCAAGTTTGCATTCAAT GATCTAAAATGTGCCACCCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTT GGATGTGTTTTTAAAGGGTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACA GGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGG GTGGCAGAGGTTGATTTCCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGA TATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTA GATAACCATCTATTCAGAAGGTCTCTTCCTCTCCCTTGGTCCATCAGAATGAAGGTTGCT CTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTAC CGTGATTTTAAAACATCTAATATACTGCTAGATGCTGATTACAATGCAAAACTCTCAGAT TTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATG GGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGT GATGTCTATAGTTTTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGAC AAGAACCGCCCAAATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAA AGGCAGCGCTTCTACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGT GCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACCGGGACCCGAAAGCCCGGCCA CTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGC TCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAAT GGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATG AGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTG AAATAACTAGAGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGG CTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGAT ATAGGTGAAAAGGAGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGTTTT AACTGGATGCTGATAGACCCTTTTCTATATATTTTTCCTCCAAAGTAAGCTAGCTTTGGT



consensusID : consensus_11831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [ACCGGGTCCGGGAATTTCCCGGGTCGACCCACGCGGTCCGCTCGGACCGGGCAGCCACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCGTACTCACCCAAGCCGAACGTGAGAATAACTAGAGGCGCATAATCCTGGTCTGGTTGGTGGGAACTTGGTTGGGGCTGAGTGGCTTGGCGTGAACCTTGTTGTGCCATCTGAATTGATCTTTCCTGTGAGATTGACATGTGAAAATGGATATAGGTGGAAAAGGAGCTGTAGGTACCCGATTTCCCTTGTGGATGGTTTGCANCTGAGGTTTTAACTGGATNGCTGATAGACCCTCTTTCTATANATGNGTGTTGCCTGCCCAAGTGAAGCTAGCTTTGGTTAATTTAATTACACCCATGGATCCTCCTAATGATTGCCCCNNACATCATTTCGGAGGCATAGGTGCATCCTACCCGACTGTTTATGCGAAACTGCACATACCCTTAATGCCAAAATGGTTGGTAGATATGCCCATGTGGTTNTGTTGTGAGTGCCAAAAAAAAAA]

[+] EMBL BM038113             [ACCGGGTCCGGGAATTTCCCGGGTCGACCCACGCGGTCCGCTCGGACCGGGCAGCCACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCGTACTCACCCAAGCCGAACGTGAGAATAACTAGAGGCGCATAATCCTGGTCTGGTTGGTGGGAACTTGGTTGGGGCTGAGTGGCTTGGCGTGAACCTTGTTGTGCCATCTGAATTGATCTTTCCTGTGAGATTGACATGTGAAAATGGATATAGGTGGAAAAGGAGCTGTAGGTACCCGATTTCCCTTGTGGATGGTTTGCANCTGAGGTTTTAACTGGATNGCTGATAGACCCTCTTTCTATANATGNGTGTTGCCTGCCCAAGTGAAGCTAGCTTTGGTTAATTTAATTACACCCATGGATCCTCCTAATGATTGCCCCNNACATCATTTCGGAGGCATAGGTGCATCCTACCCGACTGTTTATGCGAAACTGCACATACCCTTAATGCCAAAATGGTTGGTAGATATGCCCATGTGGTTNTGTTGTGAGTGCCAAAAAAAAAA]


>consensus_11831#1 ACCGGGTCCGGGAATTTCCCGGGTCGACCCACGCGGTCCGCTCGGACCGGGCAGCCACCG ATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCGTACTCACCCAAGCCGAA CGTGAGAATAACTAGAGGCGCATAATCCTGGTCTGGTTGGTGGGAACTTGGTTGGGGCTG AGTGGCTTGGCGTGAACCTTGTTGTGCCATCTGAATTGATCTTTCCTGTGAGATTGACAT GTGAAAATGGATATAGGTGGAAAAGGAGCTGTAGGTACCCGATTTCCCTTGTGGATGGTT TGCANCTGAGGTTTTAACTGGATNGCTGATAGACCCTCTTTCTATANATGNGTGTTGCCT GCCCAAGTGAAGCTAGCTTTGGTTAATTTAATTACACCCATGGATCCTCCTAATGATTGC CCCNNACATCATTTCGGAGGCATAGGTGCATCCTACCCGACTGTTTATGCGAAACTGCAC ATACCCTTAATGCCAAAATGGTTGGTAGATATGCCCATGTGGTTNTGTTGTGAGTGCCAA AAAAAAAA



consensusID : consensus_11831#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence
                              [GGGTAACTTCCTCGGTCAAAGGTNCCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACCCGGGACCCGAAAGCCCCGGGCCCANTGATGANCCAAGTGGTAGAGGTTCTCAANCCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCCCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAAAAAAAAAAA]

[+] EMBL C98383               [GGGTAACTTCCTCGGTCAAAGGTNCCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAACCCGGGACCCGAAAGCCCCGGGCCCANTGATGANCCAAGTGGTAGAGGTTCTCAANCCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTTCATTTGCCCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAAAAAAAAAAA]


>consensus_11831#2 GGGTAACTTCCTCGGTCAAAGGTNCCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTC AACCCGGGACCCGAAAGCCCCGGGCCCANTGATGANCCAAGTGGTAGAGGTTCTCAANCC CACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTG AGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAGGTGCAGGGTT CATTTGCCCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCC CGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGAATCCTGGTCTAGTTGGTG GAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCT TTCCTGTAAAAAAAAAAA



consensusID : consensus_11831#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 400
fasta sequence
                              [GGTTGGGTGAGGATGGGGGGTGGTGGTGGTGGTGGTGGGGTTGAGGGAGATTTGGTGGTGTAGGTGGGGGTGATTTGATTTGGTTTGGTTTGATTTGTGGGCGTGTTCGTCGGCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGGGTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTTCCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAA]

[+] EMBL AU093524             [GGTTGGGTGAGGATGGGGGGTGGTGGTGGTGGTGGTGGGGTTGAGGGAGATTTGGTGGTGTAGGTGGGGGTGATTTGATTTGGTTTGGTTTGATTTGTGGGCGTGTTCGTCGGCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGGGTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTTCCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGATTGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAA]
[+] EMBL CF326177             [                                                                                                                                                                                            GGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGC                                                                                                                                                 ]


>consensus_11831#3 GGTTGGGTGAGGATGGGGGGTGGTGGTGGTGGTGGTGGGGTTGAGGGAGATTTGGTGGTG TAGGTGGGGGTGATTTGATTTGGTTTGGTTTGATTTGTGGGCGTGTTCGTCGGCGGAACT TCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGGGTGGATTG AAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACAC TCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTTCCTAGGTA ACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGACCAAAGAT TGCTGGTTTATGAATTCATGCCTCGTGGAAGTTTAGATAA



consensusID : consensus_11831#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence
                              [CCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGNGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGGAGCTGTNGGTNCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093525             [CCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGNGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGGAGCTGTNGGTNCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11831#4 CCGATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAG NGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTG TTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAA AGGAGCTGTNGGTNCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11831#0      ------------------------------------------------------------
consensus_11831#3      ------------------------------------------------------GGTTGG 6
consensus_11831#1      ACCGGGTCCGGGAATTTCCCGGGTCGACCCACGCGGTCCGCTCGGACCGGGCAGCCACCG 60
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ----------------------------------------------------------GG 2
                                                                                   

consensus_11831#0      ------------------GCATCTA------AAGCTGGAGAGGAAATAAAAGTTGC---C 33
consensus_11831#3      GTGAGGATGGGGGGTGGTGGTGGTG------GTGGTGGGGTTGAGGGAGATTTGGT---G 57
consensus_11831#1      ATGAGGAGCCTGTCCGATGGCCCCC----GTGCTTCCCCGTTC-CGCGTACTCACCCAAG 115
consensus_11831#4      -------------CCGATGGCCCCC----GTGCTTCCCCGTTC-CGC-TACTCACCCAAG 41
consensus_11831#2      GTAACTTCCTCGGTCAAAGGTNCCCCAGAAGGCAGCACAGTTAGCACGTGCTTGTCTCAA 62
                                         *                    *                    

consensus_11831#0      TCACAGTTGCGCAAGTTTGCAT-----TCAAT--GATCTAAAATGTG-------CCACC- 78
consensus_11831#3      GTGTAGGTGGGGGTGATTTGAT-----TTGGTTTGGTTTGATTTGTGGGCGTGTTCGTCG 112
consensus_11831#1      CCGAACGTGAGAATAACTAGAGGCGCATAATCCTGGTCTGGTTGGTGGG-AACTTGGTTG 174
consensus_11831#4      CCGAACGTGA-AATAACTAGNG------AATCCTGGTCTAGTTGGTGG--AACTTGGTTG 92
consensus_11831#2      CCCGGGACCCGAAAGCCCCGGG---CCCANTGATGANCCAAGTGGTAG--AGGTTCTCAA 117
                                                         *         **              

consensus_11831#0      -CGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGG 137
consensus_11831#3      GCGGAACTTCAGGCCTGAGAGTATCCTTGGAGAGGGGGGTTTTGGATGTGTTTTTAAAGG 172
consensus_11831#1      GGG--CTGAGTGGCTTGGCGTGAACCTTGTTGTGCCATCTGAATTGATCTTTCCTGTGAG 232
consensus_11831#4      GGGGGCTGAGTGGCTTGGC-TGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGT-AG 150
consensus_11831#2      NCCCACTGCTCAACCT--CAAGGACATGGCTA-GCTCCTCGTACT--TCTATCAGACAAT 172
                                    * *        * * *    *                 *        

consensus_11831#0      GTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGT 197
consensus_11831#3      GTGGATTGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGT 232
consensus_11831#1      ATTGACATGTGAAAATGG-A-TATAGGTGGAAAAGGAGCTGTAGGTACCCGATTTCCCTT 290
consensus_11831#4      ATTGACATGTGAAAATGG-A-TATAGGTG-AAAAGGAGCTGTNGGTNCCAAAAA------ 201
consensus_11831#2      GCAAGC-TGAGAGAATGGCG-CACTCAAGCAGCATGAATGGTAGGAGCCATGCCCTTAAG 230
                                 ** *****               *         **               

consensus_11831#0      CAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTT 257
consensus_11831#3      CAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGGCAGAGGTTGATTT 292
consensus_11831#1      GTGGATGGTTTG-CANCTGAGGTTTTAACTGGATNGCTGATAGACCCTCT-TTCTATANA 348
consensus_11831#4      AAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 244
consensus_11831#2      GTGCAGGGTTCA-TTTGCCCGGAACGGGCAG--CAACCGATGAGGAGCCT-GTCCGATGG 286
                           *                                  *                    

consensus_11831#0      CCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGA 317
consensus_11831#3      CCTAGGTAACCTTCACCATCCCAATTTGGTGAGGCTGATTGGATATTGTGTTGAAGATGA 352
consensus_11831#1      TGNGTGTTGCCTGCCCAAGTGAAGCTAGCTTTGGTTAATTTAATTACACCCATGGATCCT 408
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      CCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGAATCC 346
                                                                                   

consensus_11831#0      CCAAA-GATTGCT-GGTTTATGAATTC--ATGCCTCGTGGAAGTTTAGATAACCATCTAT 373
consensus_11831#3      CCAAA-GATTGCT-GGTTTATGAATTC--ATGCCTCGTGGAAGTTTAGATAA-------- 400
consensus_11831#1      CCTAATGATTGCCCCNNACATCATTTCGGAGGCATAGGTGCATCCTACCCGACTGTTTAT 468
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      TGGTCTAGTTGG--TGGAACTTGGTTGGGGGGCTGAGTGGC---TTGGCTGAACATTGTT 401
                                                                                   

consensus_11831#0      TCAGAAGGTCTCTTCCTCTCCCTTGGTCCATCAGAATGAAGGTTGCTCTTGGAGCAGCAA 433
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      GCGAAA-CTGCACATACCCTTAATGCCAAAATGGTTGGTAGATATGCCCATGTGGTTNTG 527
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      GTGCAATCTGAATTGATCTTTCCTGTAAAAAAAAAAA----------------------- 438
                                                                                   

consensus_11831#0      AGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAA 493
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      TTGTGAGTGCCAAAAAAAAAA--------------------------------------- 548
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      CATCTAATATACTGCTAGATGCTGATTACAATGCAAAACTCTCAGATTTTGGGCTTGCCA 553
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      AAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTT 613
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ATGCAGCTCCGGAGTATGTTATGACAGGCCATTTGACATCAAAGAGTGATGTCTATAGTT 673
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      TTGGTGTGGTGCTACTTGAGATGATGTCAGGGCGCAGGTCAATGGACAAGAACCGCCCAA 733
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ATGGTGAGCACAACCTTGTTGAGTGGGCACGCCCCCTCCTAGGAGAAAGGCAGCGCTTCT 793
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAG 853
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      CACAGTTAGCACGTGCTTGTCTCAACCGGGACCCGAAAGCCCGGCCACTGATGAGCCAAG 913
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      TGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACATGGCTAGCTCCTCGTACTTCT 973
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCATG 1033
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      CCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCG 1093
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ATGGCCCCCGTGCTTCCCCGTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGA 1153
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      ATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAGTGGCTTGGCTGAACATTGTTG 1213
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      TGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAGG 1273
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      AGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGTTTTAACTGGATGCTGA 1333
consensus_11831#3      ------------------------------------------------------------
consensus_11831#1      ------------------------------------------------------------
consensus_11831#4      ------------------------------------------------------------
consensus_11831#2      ------------------------------------------------------------
                                                                                   

consensus_11831#0      TAGACCCTTTTCTATATATTTTTCCTCCAAAGTAAGCTAGCTTTGGT 1380
consensus_11831#3      -----------------------------------------------
consensus_11831#1      -----------------------------------------------
consensus_11831#4      -----------------------------------------------
consensus_11831#2      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)