|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 908 fasta sequence
[CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC-GACCCGAACGGGATCAT-GTACGGCAACT-GCCTCGCGTTCGCCGCCACCGGCGA-CGACGGGACCACCGGCATCATCGGGAAC-GTGCAGCAGCGGACGTTCGAGGTCCTG-TACGACGTCGGCAGCAGCACG-CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA-GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG-GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA-TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA]
[+] EMBL AK101967 [CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCgatcg ]
[+] EMBL AK105989 [CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATAC ]
[-] EMBL CB644348 [ ATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAAAAAAAAAAAA ]
[-] EMBL CB646755 [ CCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACT ]
[-] EMBL CB647128 [ CGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTAGGAATAATA ]
[+] EMBL BI811839 [ gcCCGCCATCGACCTCTGACCCG ACGGGATCATGGTGCGGCAACTGGCCTCGCGTTCGCCGCCACC GCGATCGACGGGACCACCGGCATCATCGGGAACGGTGCAACATCGGACTTTCGA GTCCTGTTACGACGTCGGCAGCAGCACGTCTCGGCTTCC GTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTA CACGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTTTGTGTTGCGAGGTAAGATTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCT AAAAAATATTATATTAGGAGTGAACTTTTCATGATTTTTTTATGAATAATAAAGACTTTATACTGATTAA AAAAAAAA]
[+] EMBL AU183948 [ ATCAT GTACGGCAACT GCCTCGCGTTCCCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA]
consensusID : consensus_11832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTCGACCCGAACGGGATCATGTACCGGCACTGCCTCGCGTTCGCCGCCACCCGGCGACGACGGGACCACCCGGCATCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGACGTCGGCCAGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGCCGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGGGTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAAAAA]
[+] EMBL BQ907407 [CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTCGACCCGAACGGGATCATGTACCGGCACTGCCTCGCGTTCGCCGCCACCCGGCGACGACGGGACCACCCGGCATCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGACGTCGGCCAGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGCCGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGGGTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAAAAA]
consensusID : consensus_11832#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[CCGGATTCCCGGGGACCCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGCGGATCATGTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACCGGCGATCGACGGGACCACCGGCATCATCGGGTACGTCATCAGTCGGACGTTTCGAGGTCCTGTACGTACTGTCGGCACAGCACGCTCGGCTTCCGGTCCGCGCGTTTGACCGGGCGGCGGCGCGACGCCGGCGCCTGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT]
[+] EMBL BI807790 [CCGGATTCCCGGGGACCCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGCGGATCATGTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACCGGCGATCGACGGGACCACCGGCATCATCGGGTACGTCATCAGTCGGACGTTTCGAGGTCCTGTACGTACTGTCGGCACAGCACGCTCGGCTTCCGGTCCGCGCGTTTGACCGGGCGGCGGCGCGACGCCGGCGCCTGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11832#0 CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTT 60
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 CTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGG 120
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 CGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTA 180
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 CGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGT 240
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 GTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGC 300
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 GTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGC 360
consensus_11832#1 ------------------------------------------------------------
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGAC 420
consensus_11832#1 CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGAC 60
consensus_11832#2 ------------------------------------------CCGGATTCCCGGG--GAC 16
** *** ** ***
consensus_11832#0 CGTCGCGCTGGTGTTCTCCGG---CGGCGCCGCCATCGACCTCGACCCGAACGGGATCAT 477
consensus_11832#1 CGTCGCGCTGGTGTTCTCCGG---CGGCGCCGCCATCGACCTCGACCCGAACGGGATCAT 117
consensus_11832#2 CCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGC--GGATCAT 74
* **** * * * * * ***************** ****** *******
consensus_11832#0 GTACGGCAACTG---CCTCGCGTTCG-CCGCCACC-GGCGA-CGACGGGACCACC-GGCA 530
consensus_11832#1 GTACCGGCACTG---CCTCGCGTTCG-CCGCCACCCGGCGA-CGACGGGACCACCCGGCA 172
consensus_11832#2 GTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACC-GGCGATCGACGGGACCACC-GGCA 132
** * * * * * ********* ******** ***** ************* ****
consensus_11832#0 TCATCGGGAACGTGCAGCAGC------GGACGTTCGAGGTCC-TGTAC-GAC-GTCGGCA 581
consensus_11832#1 TCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGAC-GTCGGCC 231
consensus_11832#2 TCATCGGGTACGTCATCAGTC-----GGACGTTTCGAGGTCC-TGTACGTACTGTCGGCA 186
******** **** * * ********** ***** ** ******
consensus_11832#0 G--CAGCACG--CTCGGCTTCCGGTCC-GGCGC-GTGTTGACC-GGGGCGGG--CGGCGC 632
consensus_11832#1 AGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGC 291
consensus_11832#2 ---CAGCACG--CTCGGCTTCCGGTCCGCGCGT----TTGACC--GGGCGG---CGGCGC 232
****** *************** *** ****** **** * ******
consensus_11832#0 -GACG--CCGGCGCC-TGGCGGG--CCGGGCAAC-ACGACACACGTAGAGGCCA-AGAGG 684
consensus_11832#1 CGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGG 351
consensus_11832#2 -GACG--CCGGCGCC--TGCGGG--CCGGGCAAC-ACGACACACGTAGAGGCCA-AGAGG 283
*** ******** ** ** ********* ******************* *****
consensus_11832#0 GTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 744
consensus_11832#1 GTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 411
consensus_11832#2 GTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 343
*** * ******************************************************
consensus_11832#0 TGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAA 804
consensus_11832#1 TGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAA 471
consensus_11832#2 TGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT------------ 391
***************** ********************* ********
consensus_11832#0 ATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGATT 864
consensus_11832#1 -TATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAA 530
consensus_11832#2 ------------------------------------------------------------
consensus_11832#0 TTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA 908
consensus_11832#1 AAA----------------------------------------- 533
consensus_11832#2 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||