These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 846 fasta sequence [TTTTTGAAGATGGAAAAAAAAGGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA-GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAAGACTCTC] [-] EMBL BI799622 [TTTTTGAAGATGGAAAAAAAAGGGAACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAAGGGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACA TTTGTGACTTGCTGGCTAACTGATTCTCCACCG TTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTGTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTG CGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCA ] [-] EMBL CB643648 [ GGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGA ] [-] EMBL CB643687 [ GGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACAGGAAAGA ] [+] EMBL AU225376 [ gccgctGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAATCATTGCAA GGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAAT ] [+] EMBL CB664239 [ AATTTGACTGCTATAGATGAGAAGAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAAGACTCTC] [+] EMBL CB618325 [ agaccccttAAAGGGCTCAGCAGNTCACTTTGACATTTTGTGACTTGCTGGCTAACTGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG TTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCAC ] [-] EMBL CA998479 [ TAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAACAAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACGCTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGCTTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCCTGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATCTTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTGAGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTGCTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGCTTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGATGCATTA ] consensusID : consensus_11835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 393 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAATCATTGCAAGGACAAACAATGTA-GGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAAGAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAACAAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACGGNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA] [-] EMBL AU058093 [TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAATCATTGCAAGGACAAACAATGTA GGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAAGAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGATTCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCGTTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAACAAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACGGNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA] [-] EMBL AU097044 [TTTTTTTTTTTTTTTTTTTTTTTTATGTTTTCTGTGATCCAATCATTGCAAGGACAAACAATGTAGGGTATCGATGACAAAATTTGACTGCTATAGATGAGAAGNGGACACAAAATCGCTCAGCAGTTCANTTTGACATTTTGNGACTTGCTGGCTAACTGATTCTCCNCCGTTTGATATATTCCCACGGAAACTCAAAATTGCCNTTTTGn ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11835#0 TTTTTGAAGATGGAAAAAAAAGGGGACCATGCTTCATGGGTTATGTTTTCTGTGATCCAA 60 consensus_11835#1 ------------------TTTTTTTTTTTTTTTTTTTTTTTTATGNNNTCTGTGATCCAA 42 * ** * ***** ************ consensus_11835#0 TCATTGCAAGGACAAACAATGTAGGTATCGATGACAAAATTTGACTGCTATAGATGAGAA 120 consensus_11835#1 TCATTGCAAGGACAAACAATGTAGGTNTCGNTGACAAAATTTGACTGCTATAGATGAGAA 102 ************************** *** ***************************** consensus_11835#0 GAGGACACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACTGAT 180 consensus_11835#1 GAGGNCACAAAATCGCTCAGCAGTTCACTTTGACATTTTGTGACTTGCTGGCTAACNGAT 162 **** *************************************************** *** consensus_11835#0 TCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG 240 consensus_11835#1 TCTCCACCGTTTGATATATTCCCACGAAAACTCAAAATTGCCATTTTGATAAAACTGGCG 222 ************************************************************ consensus_11835#0 TTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGAGCAAAC 300 consensus_11835#1 TTTTTTTGGTCTAAAGAAGCCCAAGGGCAAGTAAAGGAAACTCATGGATGAGGTGCAAAC 282 ***************************************************** ****** consensus_11835#0 AAAATTCCCATGAAATGGTTCATATGGCCATGACTTTTGCACATAAGGCATGGGCTTACG 360 consensus_11835#1 AAAATTCCCATGAAATGGTTCATATGGNCATGACTTTTGCACATAAGGCATGGGCTTACG 342 *************************** ******************************** consensus_11835#0 -CTTCCATCTTGTCGAAAGAATCCAGCAGATGCTCGATGTCCGGGGTTACAATCGCGCGC 419 consensus_11835#1 GNTTCCATCTTGTCGGAAGGATCCAGCAGATGCTCGAAGTCCGGGGGTACA--------- 393 ************* *** ***************** ******** **** consensus_11835#0 TTGCTGATCTCTCCCAAGGTGCAGCAGTGCTTTTCTCTGGCGTTAATTGCCGCAACCTCC 479 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 TGGACAAACATGCAATTTGAACCCGGAGAGACATCAAAGAGTGAATCTCCGATCTTCATC 539 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 TTCACTTTACCGCTCCTATATACAAGTATCTTCCCCATGAAACCTTCTGGAAGGTCTTTG 599 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 AGCTTAGAGCCAAGGACTTTTGGTGGCCTTGTTCCTGCATGCATCTCCTTAGAGCTTGTG 659 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 CTTGTAGGTTCAGCATCCACCCCATCGCCTTTATCTGTCTCTGCGACTGAGTCTGGCTGC 719 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 TTTGGTAATGGAAGAGATGCAGGCATCTGGAAGAAAAGCAACTGTGCTTTGTCTGACCGA 779 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 TGCATTAGTCCAAGTTCTTCTGCTGTGGTTAATTCACCATCTTGGGCTCCGGTGGCAGAA 839 consensus_11835#1 ------------------------------------------------------------ consensus_11835#0 GACTCTC 846 consensus_11835#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||