cluster # 1184

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Oryza sativa
cluster # 1184 cluster # 1184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1184#0 length = 453 sequences # 1

consensus_1184#1 length = 103 sequences # 1

consensusID : consensus_1184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGCCTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGT]

[+] EMBL CF338011             [TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGCCTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGT]




>consensus_1184#0
TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCG
GAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACA
TAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAG
CCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATC
TTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATC
AACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGC
CTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGG
GCAGCTTCCACATGGTCCAATACCTGCCATCGT

consensusID : consensus_1184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 103
fasta sequence

                              [GGAATAGCTTGGGGTATCTAGCATCAGAATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC]

[+] EMBL BU673738             [GGAATAGCTTGGGGTATCTAGCATCAGAATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC]




>consensus_1184#1
GGAATAGCTTGGGGTATCTAGCATCAGAATTGGACCATGTGGAAGCTGCCCATGTTCGGC
TGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1184#0      TTTTTTTTTTTTTTTTTTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCG 60
consensus_1184#1      ------------------------------------------------------------
                                                                                  

consensus_1184#0      GAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACA 120
consensus_1184#1      ------------------------------------------------------------
                                                                                  

consensus_1184#0      TAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAG 180
consensus_1184#1      ------------------------------------------------------------
                                                                                  

consensus_1184#0      CCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATC 240
consensus_1184#1      ------------------------------------------------------------
                                                                                  

consensus_1184#0      TTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAATGAAGCTAATC 300
consensus_1184#1      -------------------------------------------------------GGAAT 5
                                                                               *  

consensus_1184#0      AACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATTCGGGGTAGGC 360
consensus_1184#1      AGCTTGGGGTATCTAGCATCA--GAATTGGACCATGTGG---AAGCTGCCCATGTTCGGC 60
                      * **     *  **  * *     **   **  **  **   ***     *  * * ***

consensus_1184#0      CTTTCTTGGCCTCCTCAAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGG 420
consensus_1184#1      TGCACCGATGCCACCCAGTGTGCTCAAGGAGCTCGAGGAGGCC----------------- 103
                          *     *  * **   * **  ** * ** *  *    *                 

consensus_1184#0      GCAGCTTCCACATGGTCCAATACCTGCCATCGT 453
consensus_1184#1      ---------------------------------