cluster # 11842

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11842 cluster # 11842 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11842#0 length = 2072 sequences # 4
consensus_11842#1 length = 1714 sequences # 2

consensus_11842#2 length = 747 sequences # 1
consensus_11842#3 length = 460 sequences # 1
consensus_11842#4 length = 407 sequences # 1

consensusID : consensus_11842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2072
fasta sequence

                              [CTCTCTTCTCTCTGCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCCGCCGCGGATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTGCCTGCGGCGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTCTCCCTCTCTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGTAGCATTGGTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCCGGGGTCGCGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGACGCTCAACACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAGCCACCTCACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACAGTGGCCGATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAGACACCGCAGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGGAGCTATTGATGGTCAGGGCTCGGTATGGTGGGATTGGCTTCACTCCCATGAGCTTAACCATAGCCGACCTCATATTGTGGAGTTTCTGCATTCCGAAGAAGTTGTAATCTCAAACTTAACATTTTTAAATTCTCCAGCCTGGAGCATACATCCAGTGTATTGCAGCAATGTAAAGGTCCACAATGTCACAATCAAGACCTCATTGGATGCTCCACTCACTGATGGCATAGTTCCAGATTCATGTTCCAACGTGTGCATTGAGGATAGCAGCATTAGTGTTGGTCATGATGCCATATCACTCAAAAGCGGGTGGGACAATTACGGAATTTCTTTTGGAAGGCCAACCTCAGACATTCATATCAGTAGGGTTGATCTGCAAGCATCGTCTGGAGCTGCTCTTGCAATTGGTAGTGAAATGTCTGGTGGAATTTCAGATATTCATGTTGATCACATTCGAATCGGCAGTTCCAGTAAAGGCATCTCCTTCAGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGTAGTAATGGATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGATGACCATTTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGAGGGGACAAACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGCTATATGCCTTTCTAATCTCAATTTCTCTATAGCCGATTCGGCTCCTTCCAGTGCCTGGACTTGTTCAAATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACATCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAAATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTCAGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCACAAGAATGAAACAGTACCCCTCTTATGGTCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGGAACTTTAACAGGCTGGTTTTTTTGTATGTAGAGCCAAAGGNTGTATCCTTGAGTATAAATAAGCATCTGGTCTCAATCAAGTTGTTAAAAAAAAAAAAA]

[+] EMBL AK065526             [CTCTCTTCTCTCTGCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCCGCCGCGGATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTGCCTGCGGCGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTCTCCCTCTCTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGTAGCATTGGTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCCGGGGTCGCGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGACGCTCAACACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAGCCACCTCACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACAGTGGCCGATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAGACACCGCAGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGGAGCTATTGATGGTCAGGGCTCGGTATGGTGGGATTGGCTTCACTCCCATGAGCTTAACCATAGCCGACCTCATATTGTGGAGTTTCTGCATTCCGAAGAAGTTGTAATCTCAAACTTAACATTTTTAAATTCTCCAGCCTGGAGCATACATCCAGTGTATTGCAGCAATGTAAAGGTCCACAATGTCACAATCAAGACCTCATTGGATGCTCCACTCACTGATGGCATAGTTCCAGATTCATGTTCCAACGTGTGCATTGAGGATAGCAGCATTAGTGTTGGTCATGATGCCATATCACTCAAAAGCGGGTGGGACAATTACGGAATTTCTTTTGGAAGGCCAACCTCAGACATTCATATCAGTAGGGTTGATCTGCAAGCATCGTCTGGAGCTGCTCTTGCAATTGGTAGTGAAATGTCTGGTGGAATTTCAGATATTCATGTTGATCACATTCGAATCGGCAGTTCCAGTAAAGGCATCTCCTTCAGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGTAGTAATGGATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGATGACCATTTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGAGGGGACAAACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGCTATATGCCTTTCTAATCTCAATTTCTCTATAGCCGATTTGGCTCCTTCCAGTGCCTGGACTTGTTCAAATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACATCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAAATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTCAGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCACAAGAATGAAACAGTACCCCTCTTATGGTCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACAT                                                                                                             ]
[+] EMBL CB626855             [             GCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCCGCCGCGGATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTGCCTGCGGCGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTCTCCCTCTCTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGTAGCATTGGTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCCGGGGTCGCGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGACGCTCAACACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAGCCACCTCACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACAGTGGCCGATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAGACACCGCAGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGGAGTTATTGATGGTCAGGNCTCGGTATGGTGGGATTGGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB626856             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAATGTCTGGTGGAATTTCAGATATTCATGTGNATCACATTCGAATCGGCAGTTCCAGTAAAGGCATCTCCTTCAGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGTAGTAATGGATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGATGACCATTTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGAGGGGACAAACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGCTATATGCCTTTCTAATCTCAATTTCTCTATAGCCGATTCGGCTCCTTCCAGTGCCTGGACTTGTTCAAATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACATCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAAATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTCAGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCACAAGAATGAAACAGTACCCCTCTTATGGTCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCAT                                                                                                                                                                          ]
[-] EMBL CA763338             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCTCTATAGCCGATTCGGCTCCTTCCAGTGCCTGGACTTGTTCAAATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACATCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAAATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTCAGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCACAAGAATGAAACAGTACCCCTCTCATGGTCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCGGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGGAACTTTAACAGGCTGGTTTTTTTGTATGTAGAGCCAAAGGNTGTATCCTTGAGTATAAATAAGCATCTGGTCTCAATCAAGTTGTTAAAAAAAAAAAAA]




>consensus_11842#0
CTCTCTTCTCTCTGCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCCGCCGCGG
ATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTGCCTGCGG
CGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTCTCCCTCT
CTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGTAGCATTG
GTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCCGGGGTCG
CGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGACGCTCAAC
ACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGGCGGCGCG
CAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAGCCACCTC
ACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACAGTGGCCG
ATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAGACACCGC
AGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGGAGCTATT
GATGGTCAGGGCTCGGTATGGTGGGATTGGCTTCACTCCCATGAGCTTAACCATAGCCGA
CCTCATATTGTGGAGTTTCTGCATTCCGAAGAAGTTGTAATCTCAAACTTAACATTTTTA
AATTCTCCAGCCTGGAGCATACATCCAGTGTATTGCAGCAATGTAAAGGTCCACAATGTC
ACAATCAAGACCTCATTGGATGCTCCACTCACTGATGGCATAGTTCCAGATTCATGTTCC
AACGTGTGCATTGAGGATAGCAGCATTAGTGTTGGTCATGATGCCATATCACTCAAAAGC
GGGTGGGACAATTACGGAATTTCTTTTGGAAGGCCAACCTCAGACATTCATATCAGTAGG
GTTGATCTGCAAGCATCGTCTGGAGCTGCTCTTGCAATTGGTAGTGAAATGTCTGGTGGA
ATTTCAGATATTCATGTTGATCACATTCGAATCGGCAGTTCCAGTAAAGGCATCTCCTTC
AGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGTAGTAATG
GATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGATGACCAT
TTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGAGGGGACA
AACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGCTATATGC
CTTTCTAATCTCAATTTCTCTATAGCCGATTCGGCTCCTTCCAGTGCCTGGACTTGTTCA
AATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACA
TCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAA
ATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTC
AGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCACAAG
AATGAAACAGTACCCCTCTTATGGTCCTAAGGCTCAGATTATAAGCTGCATAATGATCTT
GAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATT
TCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCAGGATATT
TTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTA
TATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGGAACTTTA
ACAGGCTGGTTTTTTTGTATGTAGAGCCAAAGGNTGTATCCTTGAGTATAAATAAGCATC
TGGTCTCAATCAAGTTGTTAAAAAAAAAAAAA

consensusID : consensus_11842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1714
fasta sequence

                              [CAGGTGCTGGTTGTGGCAATGGCGGCGGCCTCGGCCGCGGCCGCACAGCGTGACGATCTCGGAGTTCGGGGCGGTGGGCGACGGGGTGACGGTGAACACGCTGCCGTTCCAGAACGCCATCTTCTACCTCCGGTCGTTCGCCGACAAGGGCGGCGCGCAGCTGT-ACGTGCCCCGGGGGAGGTGGCTCACCGGCAGCTTCAACCTCACCAGCCACCTCACCATCTTCCTCGAGAAGGACGCCGTCATCATCGGCGCCAAGGAGGTATCAGAATGGCCAATTGTAGAACCGTTGCCATCATATGGCCAAGGAATCGATCTTCCAGGTGCGAGGCATCGCAGCTTAATAAATGGACACAATGTGACTGATGTTGTAATTACAGGGAACAATGGAATCATAGATGGCCAGGGTTTGACATGGTGGAACTGGTTTCGCTCGAATAAGTTGAACTATAGCCGCCCTCATCTTGTGGAGTTTGTGGATTCGGAAGATATTGTGATTTCAAACTTGACATTATTGAATT-CCCCTGCATGGGGTATACATCCAGT-GTTTTGTAGCAATGTAATGGTCCACGATGTCACCATTCGAACCTCATTGGATGCTCCACTTACCGATGGAATTGTTCCAGATTCATGCTCTAATATGTGCATTGAAGATAGCAGTATTAGCGTCGCTCATGATGCTATCTCGTTAAAAAGTGGGTGGGATAACTATGGCATTACCATTGGAAGGCCGGCATCAGACATTCACATAAGCAGAGTAGATCTCCAAGCCTCACTTGGAGCTGCTCTTGCATTTGGGAGTGAGATGTCTGGTGGTATTTCGGATATTCATGTTGATCACCTTAATATCCATGGTTCCTCTAGAGGCATCCTCTTCAAGACTGCACCCGGCCGTGGAGGTTATATAAGAGATGTTGTAATATCAGATGTCCAAATGGAAGATGTTAATGTCGCCATTAAATTCACTGGCGATTGGTCGACACACCCAGATAACCATTTTGATCCTTCTGCGCTCCCGATGATCAACCGAATCACACTGAAGAACATGGTTGGAACAAACATATCAGTTGCTGGAGTTTTGTCGGGAATAAACGGTGATCCATTCACCAATATCTGCCTCTCCAACATCAGTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGTCTTGCTCCAACATCTCCGGATACTCTGAGTTGGTCTTTCCAGAGCCTTGCCCAGACCTCCACCATTCATCCTCCAATTCTTCCATCTGCTTCTCCCTTCTTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGTGTCCATCCTTCGCTGTTCCAGTCCTTGTACAATCCAGAGAAAAATCCAACTTTTGTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCAATGAGGAAGTCTAGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACAGTTAAGATTTGTTCATTCAATCTGTAAGAAAAAAACATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAGTCACCCTGTATATCCCAATCAATCTTGTGAGAGCATCCAATAAAAAAAAACAGCAT]

[+] EMBL AK105676             [CAGGTGCTGGTTGTGGCAATGGCGGCGGCCTCGGCCGCGGCCGCACAGCGTGACGATCTCGGAGTTCGGGGCGGTGGGCGACGGGGTGACGGTGAACACGCTGCCGTTCCAGAACGCCATCTTCTACCTCCGGTCGTTCGCCGACAAGGGCGGCGCGCAGCTGT ACGTGCCCCGGGGGAGGTGGCTCACCGGCAGCTTCAACCTCACCAGCCACCTCACCATCTTCCTCGAGAAGGACGCCGTCATCATCGGCGCCAAGGAGGTATCAGAATGGCCAATTGTAGAACCGTTGCCATCATATGGCCAAGGAATCGATCTTCCAGGTGCGAGGCATCGCAGCTTAATAAATGGACACAATGTGACTGATGTTGTAATTACAGGGAACAATGGAATCATAGATGGCCAGGGTTTGACATGGTGGAACTGGTTTCGCTCGAATAAGTTGAACTATAGCCGCCCTCATCTTGTGGAGTTTGTGGATTCGGAAGATATTGTGATTTCAAACTTGACATTATTGAATT CCCCTGCATGGGGTATACATCCAGT GTTTTGTAGCAATGTAATGGTCCACGATGTCACCATTCGAACCTCATTGGATGCTCCACTTACCGATGGAATTGTTCCAGATTCATGCTCTAATATGTGCATTGAAGATAGCAGTATTAGCGTCGCTCATGATGCTATCTCGTTAAAAAGTGGGTGGGATAACTATGGCATTACCATTGGAAGGCCGGCATCAGACATTCACATAAGCAGAGTAGATCTCCAAGCCTCACTTGGAGCTGCTCTTGCATTTGGGAGTGAGATGTCTGGTGGTATTTCGGATATTCATGTTGATCACCTTAATATCCATGGTTCCTCTAGAGGCATCCTCTTCAAGACTGCACCCGGCCGTGGAGGTTATATAAGAGATGTTGTAATATCAGATGTCCAAATGGAAGATGTTAATGTCGCCATTAAATTCACTGGCGATTGGTCGACACACCCAGATAACCATTTTGATCCTTCTGCGCTCCCGATGATCAACCGAATCACACTGAAGAACATGGTTGGAACAAACATATCAGTTGCTGGAGTTTTGTCGGGAATAAACGGTGATCCATTCACCAATATCTGCCTCTCCAACATCAGTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGTCTTGCTCCAACATCTCCGGATACTCTGAGTTGGTCTTTCCAGAGCCTTGCCCAGACCTCCACCATTCATCCTCCAATTCTTCCATCTGCTTCTCCCTTCTTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGTGTCCATCCTTCGCTGTTCCAGTCCTTGTACAATCCAGAGAAAAATCCAACTTTTGTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCAATGAGGAAGTCTAGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACAGTTAAGATTTGTTCATTCAATCTGTAAGAAAAAAACATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAGTCACCCTGTATATCCCAATCAATCTTGTGAGAGCATCCAATAAAAAAAAACAGCAT]
[+] EMBL OSS4613A             [                                                                                                                                                   aatCGG GCGCA  TGTNACGTGCCCCGGGGGAGGTGGCTCACCGGCAGCTTCAACCTCACCAGCCACCTCACCATCTTCCTCGAGAAGGACGCCGTCATCATCGGCGCCAAGGAGGTATCAGAATGGCCAATTGTAGAACCGTTGCCATCATATGGCCAAGGAATCGATCTTCCAGGTGCGAGGCATCGCAGCTTAATAAATGGACACAATGTGACTGATGTTGTAATTACAGGGAACAATGGAATCATAGATGGCCAGGGTTTGACATGGTGGAACTGGTTTCGCTCGAATAAGTTGAACTATAGCCGGCCTCATCTTGTGGAGTTTGTGGATTCGGAAGATATTGTNATTTCAAACTTGACATTATTGAATTCCCCCTGCATGGGGTATACATCCAGTGGTTTTTTAGCAATGTAATGGTCCcgn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_11842#1
CAGGTGCTGGTTGTGGCAATGGCGGCGGCCTCGGCCGCGGCCGCACAGCGTGACGATCTC
GGAGTTCGGGGCGGTGGGCGACGGGGTGACGGTGAACACGCTGCCGTTCCAGAACGCCAT
CTTCTACCTCCGGTCGTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGCCCCGGGGGAG
GTGGCTCACCGGCAGCTTCAACCTCACCAGCCACCTCACCATCTTCCTCGAGAAGGACGC
CGTCATCATCGGCGCCAAGGAGGTATCAGAATGGCCAATTGTAGAACCGTTGCCATCATA
TGGCCAAGGAATCGATCTTCCAGGTGCGAGGCATCGCAGCTTAATAAATGGACACAATGT
GACTGATGTTGTAATTACAGGGAACAATGGAATCATAGATGGCCAGGGTTTGACATGGTG
GAACTGGTTTCGCTCGAATAAGTTGAACTATAGCCGCCCTCATCTTGTGGAGTTTGTGGA
TTCGGAAGATATTGTGATTTCAAACTTGACATTATTGAATTCCCCTGCATGGGGTATACA
TCCAGTGTTTTGTAGCAATGTAATGGTCCACGATGTCACCATTCGAACCTCATTGGATGC
TCCACTTACCGATGGAATTGTTCCAGATTCATGCTCTAATATGTGCATTGAAGATAGCAG
TATTAGCGTCGCTCATGATGCTATCTCGTTAAAAAGTGGGTGGGATAACTATGGCATTAC
CATTGGAAGGCCGGCATCAGACATTCACATAAGCAGAGTAGATCTCCAAGCCTCACTTGG
AGCTGCTCTTGCATTTGGGAGTGAGATGTCTGGTGGTATTTCGGATATTCATGTTGATCA
CCTTAATATCCATGGTTCCTCTAGAGGCATCCTCTTCAAGACTGCACCCGGCCGTGGAGG
TTATATAAGAGATGTTGTAATATCAGATGTCCAAATGGAAGATGTTAATGTCGCCATTAA
ATTCACTGGCGATTGGTCGACACACCCAGATAACCATTTTGATCCTTCTGCGCTCCCGAT
GATCAACCGAATCACACTGAAGAACATGGTTGGAACAAACATATCAGTTGCTGGAGTTTT
GTCGGGAATAAACGGTGATCCATTCACCAATATCTGCCTCTCCAACATCAGTTTCTCCCT
AGCTGATTCGACACAATCCAGCTCTTGGTCTTGCTCCAACATCTCCGGATACTCTGAGTT
GGTCTTTCCAGAGCCTTGCCCAGACCTCCACCATTCATCCTCCAATTCTTCCATCTGCTT
CTCCCTTCTTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGTGTCCA
TCCTTCGCTGTTCCAGTCCTTGTACAATCCAGAGAAAAATCCAACTTTTGTCACCATCTT
CCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAG
CTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCAATGAGGAAGTCTAGAGGGG
TTCTCTGCACAATGAAGTGTTTGCTTGTACAGTTAAGATTTGTTCATTCAATCTGTAAGA
AAAAAACATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTACTGTC
AATTTTGGTCATATAAAATAAAACATATTATGATTGAGTCACCCTGTATATCCCAATCAA
TCTTGTGAGAGCATCCAATAAAAAAAAACAGCAT

consensusID : consensus_11842#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [GCGATTGGCCGACACACCCAGATANCCGTTTTGATCCTTNTGCGCTCCCGNTGATCNATCGNATCACACTGAAGAACATGGGTGGAACANNCATATCAGNTGCTGGAGNTTTGTCGGGAATAAACGGTGANCCATTCACCTATATCTGCCTCTCCAACATCAGTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGGCTTGCTCCAACATCTNCGGATACTCTGNGNTGGNCTTTCCAGAGCCTTGCCCAGACCTGCACCATTCATNCTCCAATTCTTCCATCTGCTTCTCCCTTCTTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGNGTCCATCCTTCGCTGATCCAGTCCTTGTACAATCCAGANAAAAATNCAACTTTTGNCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGNTTTGAGGCTCATGGATGGAACAATCTATGCTGGNTTGTCAATGAGGAAGTCTAGAGGGGNTCTCTGCACAATGAAGNGGNTNGCTTGTACAGTTAAGATTTGTNCATTCANTCTGTAANAAAAAAACATTNTTTTTTGGTAGANGNNNTAAGTCTTANAGAGTGTCTCCATACTACTGNCANTTTTNGTGATTTNAANAAAGAACNTATTATGATTGAGTTACCCTGNATATNCCCCAATNCAANCNTGGGAGAGCTTCCAATAAAAAANAACA]

[+] EMBL CA764884             [GCGATTGGCCGACACACCCAGATANCCGTTTTGATCCTTNTGCGCTCCCGNTGATCNATCGNATCACACTGAAGAACATGGGTGGAACANNCATATCAGNTGCTGGAGNTTTGTCGGGAATAAACGGTGANCCATTCACCTATATCTGCCTCTCCAACATCAGTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGGCTTGCTCCAACATCTNCGGATACTCTGNGNTGGNCTTTCCAGAGCCTTGCCCAGACCTGCACCATTCATNCTCCAATTCTTCCATCTGCTTCTCCCTTCTTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGNGTCCATCCTTCGCTGATCCAGTCCTTGTACAATCCAGANAAAAATNCAACTTTTGNCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGNTTTGAGGCTCATGGATGGAACAATCTATGCTGGNTTGTCAATGAGGAAGTCTAGAGGGGNTCTCTGCACAATGAAGNGGNTNGCTTGTACAGTTAAGATTTGTNCATTCANTCTGTAANAAAAAAACATTNTTTTTTGGTAGANGNNNTAAGTCTTANAGAGTGTCTCCATACTACTGNCANTTTTNGTGATTTNAANAAAGAACNTATTATGATTGAGTTACCCTGNATATNCCCCAATNCAANCNTGGGAGAGCTTCCAATAAAAAANAACA]




>consensus_11842#2
GCGATTGGCCGACACACCCAGATANCCGTTTTGATCCTTNTGCGCTCCCGNTGATCNATC
GNATCACACTGAAGAACATGGGTGGAACANNCATATCAGNTGCTGGAGNTTTGTCGGGAA
TAAACGGTGANCCATTCACCTATATCTGCCTCTCCAACATCAGTTTCTCCCTAGCTGATT
CGACACAATCCAGCTCTTGGGCTTGCTCCAACATCTNCGGATACTCTGNGNTGGNCTTTC
CAGAGCCTTGCCCAGACCTGCACCATTCATNCTCCAATTCTTCCATCTGCTTCTCCCTTC
TTACCTACCATGCCCTTGCTGCAGCATAAGTGCATAAAGTACCAAGNGTCCATCCTTCGC
TGATCCAGTCCTTGTACAATCCAGANAAAAATNCAACTTTTGNCACCATCTTCCTTCCAA
ATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGNTTTGAGG
CTCATGGATGGAACAATCTATGCTGGNTTGTCAATGAGGAAGTCTAGAGGGGNTCTCTGC
ACAATGAAGNGGNTNGCTTGTACAGTTAAGATTTGTNCATTCANTCTGTAANAAAAAAAC
ATTNTTTTTTGGTAGANGNNNTAAGTCTTANAGAGTGTCTCCATACTACTGNCANTTTTN
GTGATTTNAANAAAGAACNTATTATGATTGAGTTACCCTGNATATNCCCCAATNCAANCN
TGGGAGAGCTTCCAATAAAAAANAACA

consensusID : consensus_11842#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [CGTNCTGCTCCCTTTTTACCTANCCATGCCCTTGTGCAGCATAAGTGCATAAAGTACCAAGTGTCCATCCTTCGCTGTCCAGTCCTTGTACAATCCAGNGAAAAATCCAACTTTTGTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCCAATGAGGAAGTCTAGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACCAGTTAAGATTTGTTCCATTCAATCTCGTCAAGAAAAAAACCATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU086065             [CGTNCTGCTCCCTTTTTACCTANCCATGCCCTTGTGCAGCATAAGTGCATAAAGTACCAAGTGTCCATCCTTCGCTGTCCAGTCCTTGTACAATCCAGNGAAAAATCCAACTTTTGTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCCAATGAGGAAGTCTAGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACCAGTTAAGATTTGTTCCATTCAATCTCGTCAAGAAAAAAACCATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11842#3
CGTNCTGCTCCCTTTTTACCTANCCATGCCCTTGTGCAGCATAAGTGCATAAAGTACCAA
GTGTCCATCCTTCGCTGTCCAGTCCTTGTACAATCCAGNGAAAAATCCAACTTTTGTCAC
CATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCTTGTGC
TACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCCAATGAGGAAGTCT
AGAGGGGTTCTCTGCACAATGAAGTGTTTGCTTGTACCAGTTAAGATTTGTTCCATTCAA
TCTCGTCAAGAAAAAAACCATTTTTTTTTGGTAGAGGGGATAAGTCTTAGAGAGTCTCTC
CATACTACTGTCAATTTTGGTCATATAAAATAAAACATATTATGATTGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11842#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [CGCGTGGGAGGACCATAAGAGGGGTACCTGTTTCATTCTTGTGATCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGGAACTTTAACAGGCTGGTTTTTTTGTATGTAGAGCCAGAGGTGTATCCTTGAGTATAAATAAGCATCTGGTCTCAATCAAGTTTGTTAAAAAAA]

[+] EMBL BQ908050             [CGCGTGGGAGGACCATAAGAGGGGTACCTGTTTCATTCTTGTGATCCTAAGGCTCAGATTATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGTAGGGTTGAGTGCCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTTATCCTGGAACTTTAACAGGCTGGTTTTTTTGTATGTAGAGCCAGAGGTGTATCCTTGAGTATAAATAAGCATCTGGTCTCAATCAAGTTTGTTAAAAAAA]




>consensus_11842#4
CGCGTGGGAGGACCATAAGAGGGGTACCTGTTTCATTCTTGTGATCCTAAGGCTCAGATT
ATAAGCTGCATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTG
CATGCCTGTACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGT
AGGGTTGAGTGCCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACAT
CATGATTAAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATC
ACATGTTATCCTGGAACTTTAACAGGCTGGTTTTTTTGTATGTAGAGCCAGAGGTGTATC
CTTGAGTATAAATAAGCATCTGGTCTCAATCAAGTTTGTTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      CTCTCTTCTCTCTGCTGCTGCTGCGGCGCTGCAGCTTCTCCTCCTCTTCTTCCGCCGCGG 60
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      ATTTTGGCCGGAATTTCGCCGGAAAAATCTGGTTTTTTCAAGTCTCTTCTTTGCCTGCGG 120
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      CGGAGGCGCGTGGATTTTTTTCTTCTCTGCTGCTTCGTCTTCTCCCATCCCTCTCCCTCT 180
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      CTTGCCGCGAGGAGGGGAGAGGGGGACTTGATGAAGAGAAGACTGGTGGTCGTAGCATTG 240
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      GTGTTGCTGGCCGTTGTTGAGTTGGTTCATGGCGATGGGTGGCGATGGGCGCCGGGGTCG 300
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ------------------------------------------------------------
consensus_11842#0      CGGCCTCACAGCGTGACCATCACCGAGTTCGGCGCCGTCGGCGATGGCAAGACGCTCAAC 360
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ----------CAGGTGCTGGTTGTGGCAATGGCGGCGGCCTCGGCCGCGGCCGCACAGCG 50
consensus_11842#0      ACCCTGCCCTTCCAGAACGCCGTCTTCTACGCTCGGTCCTTCGCCGACAAGGGCGGCGCG 420
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      TGACGATCTCGGAGTTCGGGGCGGTGGGCGACGGGGTGACGGTGAACACGCTGCCGTTCC 110
consensus_11842#0      CAGCTGTACGTGCCCAAGGGACGGTGGCTCACTGGCAGCTTCAACCTCACCAGCCACCTC 480
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      AGAACGCCATCTTCTACCTCCGGTCGTTCGCCGACAAGGGCGGCGCGCAGCTGTACGTGC 170
consensus_11842#0      ACCCTCTTCCTCGAGGAAGAGGCCGTCATCATCGGCACAAAGGATCCATCACAGTGGCCG 540
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      CCCGGGGGAGGTGGCTCACCGGCAGCTTCAACCTCACCAGCCACCTCACCATCTTCCTCG 230
consensus_11842#0      ATTGTGGAACCTTTGCCATCTTATGGGCAAGGATTAGATCTTCCAGGTCCTAGACACCGC 600
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      AGAAGGACGCCGTCATCATCGGCGCCAAGGAGGTATCAGAATGGCCAATTGTAGAACCGT 290
consensus_11842#0      AGTTTAATAAATGGATATAATTTAAGTGATGTTGTCATTACTGGGAATAATGGAGCTATT 660
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      TGCCATCATATGGCCAAGGAATCGATCTTCCAGGTGCGAGGCATCGCAGCTTAATAAATG 350
consensus_11842#0      GATGGTCAGGGCTCGGTATGGTGGGATTGGCTTCACTCCCATGAGCTTAACCATAGCCGA 720
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      GACACAATGTGACTGATGTTGTAATTACAGGGAACAATGGAATCATAGATGGCCAGGGTT 410
consensus_11842#0      CCTCATATTGTGGAGTTTCTGCATTCCGAAGAAGTTGTAATCTCAAACTTAACATTTTTA 780
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      TGACATGGTGGAACTGGTTTCGCTCGAATAAGTTGAACTATAGCCGCCCTCATCTTGTGG 470
consensus_11842#0      AATTCTCCAGCCTGGAGCATACATCCAGTGTATTGCAGCAATGTAAAGGTCCACAATGTC 840
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      AGTTTGTGGATTCGGAAGATATTGTGATTTCAAACTTGACATTATTGAATTCCCCTGCAT 530
consensus_11842#0      ACAATCAAGACCTCATTGGATGCTCCACTCACTGATGGCATAGTTCCAGATTCATGTTCC 900
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      GGGGTATACATCCAGTGTTTTGTAGCAATGTAATGGTCCACGATGTCACCATTCGAACCT 590
consensus_11842#0      AACGTGTGCATTGAGGATAGCAGCATTAGTGTTGGTCATGATGCCATATCACTCAAAAGC 960
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      CATTGGATGCTCCACTTACCGATGGAATTGTTCCAGATTCATGCTCTAATATGTGCATTG 650
consensus_11842#0      GGGTGGGACAATTACGGAATTTCTTTTGGAAGGCCAACCTCAGACATTCATATCAGTAGG 1020
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      AAGATAGCAGTATTAGCGTCGCTCATGATGCTATCTCGTTAAAAAGTGGGTGGGATAACT 710
consensus_11842#0      GTTGATCTGCAAGCATCGTCTGGAGCTGCTCTTGCAATTGGTAGTGAAATGTCTGGTGGA 1080
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ATGGCATTACCATTGGAAGGCCGGCATCAGACATTCACATAAGCAGAGTAGATCTCCAAG 770
consensus_11842#0      ATTTCAGATATTCATGTTGATCACATTCGAATCGGCAGTTCCAGTAAAGGCATCTCCTTC 1140
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      CCTCACTTGGAGCTGCTCTTGCATTTGGGAGTGAGATGTCTGGTGGTATTTCGGATATTC 830
consensus_11842#0      AGGACTACTCCGGGACGTGGAGGTTACATAGCGGAAGTTGTCGTCGCAGATGTAGTAATG 1200
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ATGTTGATCACCTTAATATCCATGGTTCCTCTAGAGGCATCCTCTTCAAGACTGCACCCG 890
consensus_11842#0      GATAGTGTCCATCTCGCCATTGAGTTTACCGGTAACTGGTCAAGCCACCCAGATGACCAT 1260
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------------------------------------------------
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      GCCGTGGAGGTTATATAAGAGATGTTGTAATATCAGATGTCCAAATGGAAGATGTTAATG 950
consensus_11842#0      TTTGATCCATCTTTTCTTCCGGTGATAGATCAAATCACCCTTAAGAATATGGAGGGGACA 1320
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ------------------GCGATTGGCCGACACACCCAGATANCCGTTTTGATCCTTNTG 42
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      TCGCCATTAAATTCACTGGCGATTGGTCGACACACCCAGATAACCATTTTGATCCTTCTG 1010
consensus_11842#0      AACATCTCTGTTGCTGGAGTTCTATCAGGAATCGAGGGTGATCCATTTAGTGCTATATGC 1380
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      CGCTCCCGNTGATCNATCGNATCACACTGAAGAACATGGGTGGAACANNCATATCAGNTG 102
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      CGCTCCCGATGATCAACCGAATCACACTGAAGAACATGGTTGGAACAAACATATCAGTTG 1070
consensus_11842#0      CTTTCTAATCTCAATTTCTCTATAGCCGATTCGGCTCCTTCCAGTGCCTGGACTTGTTCA 1440
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      CTGGAGNTTTGTCGGGAATAAACGGTGANCCATTCACCTATATCTGCCTCTCCAACATCA 162
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      CTGGAGTTTTGTCGGGAATAAACGGTGATCCATTCACCAATATCTGCCTCTCCAACATCA 1130
consensus_11842#0      AATGTGCATGGATATTCTGAATTAGTATTCCCCAAGCCTTGCTCAGAACTCCATGACACA 1500
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      GTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGGCTTGCTCCAACATCTNCGGAT 222
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      GTTTCTCCCTAGCTGATTCGACACAATCCAGCTCTTGGTCTTGCTCCAACATCTCCGGAT 1190
consensus_11842#0      TCTACAAACTCCTCCATCTGTTTCTCCCTCTCTAGTTACAGTGCCCTCGCAGTACTATAA 1560
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      ACTCTGNGNTGGNCTTTCCAGAGCCTTGCCCAGACCTGCACCATTCATNCTCCAATTCTT 282
consensus_11842#3      ------------------------------------------------------------
consensus_11842#1      ACTCTGAGTTGGTCTTTCCAGAGCCTTGCCCAGACCTCCACCATTCATCCTCCAATTCTT 1250
consensus_11842#0      ATATACAGAGTAATCTTGTGTCCATCCTTCCCCTGTCTTGTTCCAGTCCTTGTACAATTC 1620
consensus_11842#4      ------------------------------------------------------------
                                                                                   

consensus_11842#2      CCATCTGCTTCTCCCTTCTTACCTACC-ATGCCCTTGCTGCAGCATAAGTGCATAAAGTA 341
consensus_11842#3      ---CGTNCTGCTCCCTTTTTACCTANCCATGCCCTTG-TGCAGCATAAGTGCATAAAGTA 56
consensus_11842#1      CCATCTGCTTCTCCCTTCTTACCTACC-ATGCCCTTGCTGCAGCATAAGTGCATAAAGTA 1309
consensus_11842#0      AGAAATTGAGCATCCATCACCATCTTTCCAATTCTTTACCACCAATAAATTCATCA--CA 1678
consensus_11842#4      -----------------------------------------CGCGTGGGAGGACCA--TA 17
                                                                    *      *  *   *

consensus_11842#2      CCAAGNGTCCATCCTTCGCTGATCCAGTCCTTGTACAATCCAGANAAAAATNCAACTTTT 401
consensus_11842#3      CCAAGTGTCCATCCTTCGCTG-TCCAGTCCTTGTACAATCCAGNGAAAAATCCAACTTTT 115
consensus_11842#1      CCAAGTGTCCATCCTTCGCTGTTCCAGTCCTTGTACAATCCAGAGAAAAATCCAACTTTT 1369
consensus_11842#0      AGAATGAAACA-GTACCCCTCTTATGGTCCT---AAGGCTCAGAT-----TATAAGCTGC 1729
consensus_11842#4      AGAGGGGTACCTGTTTCATTCTTGTGATCCT---AAGGCTCAGAT-----TATAAGCTGC 69
                         *      *      *  *  *    ****   *     ***       *  **  *  

consensus_11842#2      GNCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCT 461
consensus_11842#3      GTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCT 175
consensus_11842#1      GTCACCATCTTCCTTCCAAATTCTTTCCAAATAGGTGTACAAAAGAATCACCACTCTTCT 1429
consensus_11842#0      ATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGT 1789
consensus_11842#4      ATAATGATCTTGAGGAGGAAGAATCTAAGTGGGGTTGTGGATAGCTAGGTGCATGCCTGT 129
                          *  *****       **   * *       * ***  * *   *    **  * * *

consensus_11842#2      TGTGCTACCAGNTTTGAGGCTCATGGATGGAACAATCTATGCTGGNTTGTC-AATGAGGA 520
consensus_11842#3      TGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTCCAATGAGGA 235
consensus_11842#1      TGTGCTACCAGCTTTGAGGCTCATGGATGGAACAATCTATGCTGGTTTGTC-AATGAGGA 1488
consensus_11842#0      ACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGT--AGGGTTG 1847
consensus_11842#4      ACAGCTACATTTCTTCATTCAATCTGTAAGAAAAAAAATTTCTTTTTTGGT--AGGGTTG 187
                          *****     ** *  *     *   *** **    * **   ***    * *    

consensus_11842#2      AGTCTAGAGGGGNTCTCTGCACAATGAAGNGGNTNGCTTGTAC--AGTTAAGATTTGTNC 578
consensus_11842#3      AGTCTAGAGGGGTTCTCTGCACAATGAAGTG-TTTGCTTGTACC-AGTTAAGATTTGTTC 293
consensus_11842#1      AGTCTAGAGGGGTTCTCTGCACAATGAAGTG-TTTGCTTGTAC--AGTTAAGATTTGTTC 1545
consensus_11842#0      AGTGC-AGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATT 1906
consensus_11842#4      AGTGCCAGGATATTTTCTTCATACAATTGTCATTTGGTTATAAATTATCACATCATGATT 247
                       ***     *    * *** ** *     *    * * ** **     * *     **   

consensus_11842#2      -ATTCANTCT-GTAANAAAAAAA--CATTNTT----TTTTGGTAGANGNNNTAA-GTCTT 629
consensus_11842#3      CATTCAATCTCGTCAAGAAAAAAACCATTTTT----TTTTGGTAGAGGGGATAA-GTCTT 348
consensus_11842#1      -ATTCAATCT-GTAAGAAAAAAA--CATTTTT----TTTTGGTAGAGGGGATAA-GTCTT 1596
consensus_11842#0      AAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTT 1966
consensus_11842#4      AAATTATCTCTGTATATTCTATCTCTGTGAGCAACATTCTAATAGAGCAGATCACATGTT 307
                        * * *     **       *      *        ** *  ****     * *  * **

consensus_11842#2      ANAGAGTGTCTCCATACTACTGNCANTTTTNGTGATTTNAANAAAGAACNTATTATGATT 689
consensus_11842#3      AGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAA-AACATATTATGATT 407
consensus_11842#1      AGAGAGTCTCTCCATACTACTGTCAATTTTGGTCATATAAAATAA-AACATATTATGATT 1655
consensus_11842#0      ATCCTGGAACTTTAACAGGCTGGTTTTTTTG--TATGTAGAGCCA-AAGGNTGTATCCTT 2023
consensus_11842#4      ATCCTGGAACTTTAACAGGCTGGTTTTTTTG--TATGTAGAGCCA-GAGGT-GTATCCTT 363
                       *    *   **  *     ***    ****    ** *  *   *  *     ***  **

consensus_11842#2      GAGTTACCCTGNATATNCCCCAATNCAANCNTGGGAGAGCTTCCAATAAAAAANAACA-- 747
consensus_11842#3      GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAA-- 460
consensus_11842#1      GAGTCACCCTGTATATCCC---AATCAATCTTGTGAGAGCATCCAATAAAAAAAAACAGC 1712
consensus_11842#0      GAGT----ATAAATAAGC----ATCTGGTCTCAATCAAGTT---GTTAAAAAAAAAAAAA 2072
consensus_11842#4      GAGT----ATAAATAAGC----ATCTGGTCTCAATCAAGTTT--GTTAAAAAAA------ 407
                       **          * *       *              *         ******       

consensus_11842#2      --
consensus_11842#3      --
consensus_11842#1      AT 1714
consensus_11842#0      --
consensus_11842#4      --