These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1442 fasta sequence [ACTCGTTTCCCGTCTCGTCCGCATCGATCGGCGCCGGCAGTTTTCGAATTTGGGGTTTGAGAAGGTTGAGGAGGAGTTGGGAGGTTGAGAAGGCGGCGGCTGATTCGTTGGGTTCGATCGGGCTCATGGCGACGGCTTCCGGCGATCAGTCGGCGGGTTCCGCGGCGAGGGCGTCGAAGCTGAGGTACCCGCTCCGGTCGGCGAGCCGGGGGAAGGGCGCCGCCGATGCTCCTCCGACGAGCGGCTCCGTGGCGAGGAGTTTTATTCCTTGCAGACCAAAACCATCTTTGGATGTCAGCAAGAGCGTTTGTGGTCTTGATCTTTCATCGGTGAAGGATAATTCAGCCAAACCTCCACGGAGGCACTCAATACAGACCAAGCCAGGTGTTAGCCCCAGGCCAACTCCTACAGGAACTATCACTCCTGTGTCATTGGTTCGTTCAAGGAGGTCCGATAGTCAAGGGAAGTTTGATACCCCGATATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTT-GGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTGGATCGTATGAGAGATGAGCTAAAGGCTTATGTTGTCCGGCATGGCCTTGCAACAGAGTTGGAGGAACCAGTGAAGGATATTCTTCAGGTTTACAATATCGTGGAGGATCTTGAGAAGCTAAAGAT-CACTGTGAACTCTT-CAGAACAG-CCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAA-GGAAGCAGCTAAAAAAG-ACAACATTCAGAAGAAG-CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA-AGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCA-ATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCA-AGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGAACAACCAAACCGACTTCAGATTCAAATCTTTTTATCG-CTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA-T-TTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCATCTGAATATAATTGAATTCTTTATTTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073322 [ACTCGTTTCCCGTCTCGTCCGCATCGATCGGCGCCGGCAGTTTTCGAATTTGGGGTTTGAGAAGGTTGAGGAGGAGTTGGGAGGTTGAGAAGGCGGCGGCTGATTCGTTGGGTTCGATCGGGCTCATGGCGACGGCTTCCGGCGATCAGTCGGCGGGTTCCGCGGCGAGGGCGTCGAAGCTGAGGTACCCGCTCCGGTCGGCGAGCCGGGGGAAGGGCGCCGCCGATGCTCCTCCGACGAGCGGCTCCGTGGCGAGGAGTTTTATTCCTTGCAGACCAAAACCATCTTTGGATGTCAGCAAGAGCGTTTGTGGTCTTGATCTTTCATCGGTGAAGGATAATTCAGCCAAACCTCCACGGAGGCACTCAATACAGACCAAGCCAGGTGTTAGCCCCAGGCCAACTCCTACAGGAACTATCACTCCTGTGTCATTGGTTCGTTCAAGGAGGTCCGATAGTCAAGGGAAGTTTGATACCCCGATATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTT GGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTGGATCGTATGAGAGATGAGCTAAAGGCTTATGTTGTCCGGCATGGCCTTGCAACAGAGTTGGAGGAACCAGTGAAGGATATTCTTCAGGTTTACAATATCGTGGAGGATCTTGAGAAGCTAAAGAT CACTGTGAACTCTT CAGAACAG CCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAA GGAAGCAGCTAAAAAAG ACAACATTCAGAAGAAG CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA AGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCA ATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCA AGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGAACAACCAAACCGACTTCAGATTCAAATCTTTTTATCG CTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA T TTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCATCTGAATATAAT ] [+] EMBL OSS14431A [ TTTTATTCCTTGCAGACCAAAACCATCTTTGGATGTCAGCAAGAGCGTTTGTGGTCTTGATCTTTCATCGGTGAAGGATAATTCAGCCAAACCTCCACGGAGGCACTCAATACAGACCAAGCCAGGTGTTAGCCCCAGGCCAACTCCTACAGGAACTATCACTCCTGTGTCATTGGTTCGTTCAAGGAGGTCCGATAGTCAAGGGAAGTTTGATACCCCGATATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTT GGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTGGATCGTATGAGAG TGAGCTAAAGGCTTATGTTGTCCGGCATGG CTTGCAACAGAGTTGGAGGACCCAGTNAAGGNTATTCTTCAGGGTTTCAATATCGTG ] [+] EMBL CB682814 [ ATCTTTGGATGTCAGCAAGAGCGTTTGTGGTCTTGATCTTTCATCGGTGAAGGATAATTCAGCCAAACCTCCACGGAGGCACTCAATACAGACCAAGCCAGGTGTTAGCCCCAGGCCAACTCCTACAGGAACTATCACTCCTGTGTCATTGGTTCGTTCAAGGAGGTCCGATAGTCAAGGGAAGTTTGATACCCCGATATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTT GGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTGGATCGTATGAGAGATGAGCTAAAGGCTTATGTTGTCCGGCATGGCCTTGCAACAGAGTTGGAGGAACCAGTGAAGGATATTCTTCAGGTTTACAATATCGTGGAGGATCTTGAGAAGCTAAAGAT CACTGTGAACTCTT CAGAACAG CCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAA GGAAGCAGCTAAAAAAG ACAACATTCAGAAGAAG CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA AGAAGCAGGTCAAGGGGCAGAANGAAGATTGCA ATGGAGGCAGCGAGGCTTT ] [+] EMBL OSS15274A [ CTTTGGATGTCAGCAAGAGCGTTTGTGGTCTTGATCTTTCATCGGTGAAGGATAATTCAGCCAAACCTCCACGGAGGCACTCAATACAGACCAAGCCAGGTGTTAGCCCCAGGCCAACTCCTACAGGAACTATCACTCCTGTGTCATTGGTTCGTTCAAGGAGGTCCGATAGTCAAGGGAAGTTTGATACCCCGATATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTTGGGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTNGATCGTATGAGAGATGAGCTAAAGGCTTATGTTGTCCGGCATGG CTTGCAACAGAGTTGGAGGAACCAGTGAAGG TATTCTTCAGGT ] [+] EMBL OSS10962A [ ATCAGAAGTTTCCATGTCCACAGCAAGGCGCAAGTTCAGCACTCTGTCCTCAACCTCATATTGGATGACACAAATCAGGCTTGCAGAGGCTGCTTCCAAGCACTCTATATCGTT GGGCTTCTTTAAGCTTGCACTTGAATCAGAATGCGAGCCTCTGGATCGTATGAGAGATGAGCTAAAGGCTTATGTTGTCCGGCATGGNCTTGCAACAGAGTTGGAGGAACCAGTGAAGGATATTCTTCAGGTTTACAATATCGTGGAGGATCTTGAGAAGCTAAAGAT CACTGTGAACTCTT CAGAACAG CCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAAGGGAAGCAGCTAAAAAAG GCAACATTCAG AGGAG GCTGATGCAA ] [-] EMBL CB682815 [ GCTAAAGGCTTATGTTGTCCGGCATGGCCTTGCAACAGAGTTGGAGGAACCAGTGAAGGATATTCTTCAGGTTTACAATATCGTGGAGGATCTTGAGAAGCTAAAGAT CACTGTGAACTCTT CAGAACAG CCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAA GGAAGCAGCTAAAAAAG ACAACATTCAGAAGAAG CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA AGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCA ATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCA AGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGAACAACCAAACCGACTTCAGATTCAAATCTTTTTATCG CTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA T TTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCATCGGAATATAATTGAATTCTT ] [+] EMBL AU096606 [ AATATCGTGGAGGATCTTGAGAAGCTAAAGAT CACTGTGAACTCTT CAGAACAGCCCGAAAAAGTCTGACAAGGCTGCTCATAGTGCCACCAATGTGTCACCAAAGGGTAATCTGAAGCCAAGATCGCTGAATTCTGATGCAGCTCAAAGTAA GGAAGCAGCTAAAAAAG ACAACATTCAGAAGAAG CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA AGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCA ATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCA AGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGAACAACCAAACCGACTTCAGATTCAAATCTTTTTATCG CTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA T TTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCATCTGAATATAATTGAATTCTTTATTTGTGTGAAAAAAA ] [+] EMBL AU086003 [ AGCTAAAGATCCNCTGTGAACTCTTNCAGAACAGCCCGAAAAAGTCTNACAAGGCTGCTCATAGTNCCCCCAATGTGTCNCCAAAGGGTAATCTGAAGCCAAGATCGCTG ATTCTGATGCAGCTCAAAGTAA GGAAGCAGCTAAAAAAG NCAACATTCAGAAGAAG CCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCAAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCA AGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCA ATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCA AGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCAATGGATCTTGGCATAGCCCAAGAAATCTAGAACAACCAAACCGACTTCAGATTCAAATCTTTTTATCG CTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCA T TTGTTCATATATCGCTGGAGCTTGCCTTATTATCAAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGCAATTCTGAATTGTCCAGTCATGCATCTGAATATAATTGAATTCTTTATTTGTGTGATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI798176 [ CTGAATTCTGATCCAGCTCAAAGTAA GGAACCAGCTAAAAAAGCAC ACATTCAGAAGAAGCCCTGATGCAAAGGTTAGAGGCTCCTACAACCGGAATCCTGCCAAAGAAGCCATCACCAAGAATACTGGTAAGAAAGCCACAGAAGCAGGTCAAGGGGCAGAAGGAAGATTGCACATGGAGGCAGCGAGGCTTTGCCAGTTGGTACAGAGCACAGAACCTGTTGATGTGGTGAAGGAGGTGACAAATGAAGATAAGGAGAATATGGGGGACAGTGAAATGCCCATGGATCTTGGCATAGCCCAAGAAATCTAGAACAGCCCAACCGACTTCAGATTCAAATCTTTTTATCGCCTGGATATGAAGTAGAGTGTGTGGTGCTTGTTTTTTCCCCTCACTCTTGTTCATATATCGCTGGAGCTTGCCTTATTATCCAAACCATAAAGAGGTCTTTAAGTGTGTAGTATGGTTTGCAGGGTGGATGTTTGCTTTATTATCCCTTTGTTAAGTTTGC ATTCTGAATTGTCCAGTCATGCATCCGAATATAATTGAATTCTTTATTTGTGTGAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||