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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1263 fasta sequence
[TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGAAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGAGGACAGGGAGGAGAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGGTAGGGCCAGCGTGTACTACCGCTACATGGGGTCGCTCACCACG-CCGCCTTGCACGCA-GGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGC-GGCGGATTTGTCGTCTGATGT-GGATTGG-TAGCC-TAAAA-TAAATATACA-CATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCATGCCATGTGTGTAGCATGTGTGTTGATGTGGAGAGATTTGATTATTGTGGCGTACTAACCGGGGACACAAACTAAGACCCTTCCAGCTGTGCTGTTTGTCTTCTTTGTATAAACCAAGAAAAGGTTGATGATAAAAAAAAAAA]
[+] EMBL AK059773 [TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGAAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGAGGACAGGGAGGAGAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGGTAGGGCCAGCGTGTACTACCGCTACATGGGGTCGCTCACCACG CCGCCTTGCACGCA GGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGC GGCGGATTTGTCGTCTGATGT GGATTGG TAGCC TAAAA TAAATATACA CATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTT ]
[+] EMBL CF309615 [ TCT CCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGAGGACAGGGAGGAGAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGGTAGGGCCAGCGTGTACTACCGCTACATGGGGTCGCTCACCACG CCGCCTTGCACGCAGGGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAAT ]
[+] EMBL AU095328 [ ATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCNCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGAGGACAGGGAGGAGAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGGTAGGGCCAGCGTGTACNACCGCTACATGGGGTCGCTCACCACG CCGCCTTGCACGCA GGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGGCGGATTTGTCGTCTGATGTGGGATTGGNTAGCCTTAAAATTAAATATACACCATGCAG ]
[-] EMBL CF309616 [ GAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGGTAGGGCCAGCGTGTACTACCGCTACATGGGGTCGCTCACCACGNCCGCCTTGCACGCA GGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGC GGCGGATTTGTCGTCTGATGT GGATTGG TAGCC TAAAA TAAATATACA CATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCATGCCATGTGTGTAGCATGTGTGTTGATGTGGAGAGATTTGATTATTGTGGCGTACTAACCGGGGACACAAACTAAGACCCTTCCAGCTGTGCTGTTTGTCTTCTTTGTATAAACCAAGAAAAGGTTGATGATAAAAAAAAAAA]
[+] EMBL AU031928 [ TACCGCTACATGGGNTCGCTCACCACG CCGCCTTGCACGCA GGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGC GGCGGATTTGTCGTCTGATGT GGATTGG TAGCC TAAAA TAAATATACA CATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCAaaaaa ]
consensusID : consensus_11849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1046 fasta sequence
[TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGGAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGGGTAGGGCCGCCTTGCACGCAGGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGCGGATTTGTCGTCTGATGTGGATTGGTAGCCTAAAATAAATATACACATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCAAAAAAAAAAAA]
[+] EMBL AK060039 [TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGGAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGATTGCGGACAAGGGGTAGGGCCGCCTTGCACGCAGGGGGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCTCAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGCGGATTTGTCGTCTGATGTGGATTGGTAGCCTAAAATAAATATACACATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGAATAAAACACTGTT ]
[+] EMBL CA754900 [ GCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGGAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGACATCATGGTCAGGTTCGACGGCGACGCCCGCAGCGTCGTCATCAACGGCACCGCCTACTACCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACCGCCGCAGGTACGACATGGAGCTGCACATGGTCCACGAGAGCGCCCAGAAG AGGCCGCCGTGATCGG CTCCTCTACGAGGTCGGCCGCCCCGACCGCTTCCTCCCAAAGATGGAGCCCTATCTCAGGATGATTGC ]
[+] EMBL OSR26761A [ AGACGAACACGCTCTCTTCCAAAGCTGAAAGCATGGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGTCCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGGAGGAGTTCACGTACATCAGCGGGGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGCCGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCTCGGCTACCTCGACGACTTCTACCGCGCCGCCGAGGCCTTCATCGTCAACCGCGGCCACGACATCA ]
[+] EMBL AU031357 [ AAATGGNGAACAACGCGAGGCCCCTTCAGGCGGTGAACAACAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGCGGATTTGTCGTCTGATGTGGATTGGTAGCCTAAAATAAATATACACATGCAGATAGGATCACACGTAGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGACTGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCTGGTTGATTGGATTGGNATAAAACACTGTTCATTAATTTCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11849#0 TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCAT 60
consensus_11849#1 TAACCCCATCCAGCTCGAGAAGAACAAGACGAACACGCTCTCTTCCAAAGCTGAAAGCAT 60
************************************************************
consensus_11849#0 GGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGT 120
consensus_11849#1 GGGTTCGACTCGCCTCCTCGTACTGCTCGCCGCCGCTTCCCTCCTCCTCGCCACCGCCGT 120
************************************************************
consensus_11849#0 CCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGAAGGAGTTCACGTACATCAGCGG 180
consensus_11849#1 CCCGGCAGCCAGAGCACAGGAAGAAACTGATCACGAGGAGGAGTTCACGTACATCAGCGG 180
************************************* **********************
consensus_11849#0 GGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGC 240
consensus_11849#1 GGACGAGAAGGGGCCGGAGCACTGGGGCAAGCTGAAGCCGGAGTGGGCGCAGTGCGGCGC 240
************************************************************
consensus_11849#0 CGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCT 300
consensus_11849#1 CGGCGAGATGCAGTCGCCGATCGACCTCTCCCACGAGCGGGTCAAGCTGGTGCGCGACCT 300
************************************************************
consensus_11849#0 CGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGA 360
consensus_11849#1 CGGCTACCTCGACGACTCCTACCGCGCCGCCGAGGCCTCCATCGTCAACCGCGGCCACGA 360
************************************************************
consensus_11849#0 CATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTA 420
consensus_11849#1 CATCATGGTCAGGTTCGACGGCGACGCCGGCAGCGTCGTCATCAACGGCACCGCCTACTA 420
************************************************************
consensus_11849#0 CCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGA 480
consensus_11849#1 CCTCCGCCAGCTCCACTGGCACTCCCCCACCGAGCACAGCGTCGACGGCCGCAGGTACGA 480
************************************************************
consensus_11849#0 CATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCT 540
consensus_11849#1 CATGGAGCTGCACATGGTCCACGAGAGCGCCGAGAAGAAGGCCGCCGTGATCGGCCTCCT 540
************************************************************
consensus_11849#0 CTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGAT 600
consensus_11849#1 CTACGAGGTCGGCCGCCCCGACCGCTTCCTCCAAAAGATGGAGCCATATCTCAAGATGAT 600
************************************************************
consensus_11849#0 TGCGGACAAGGAGGACAGGGAGGAGAAGGTGGGCATGATTGATCCGAGGGGTGCAAGGGG 660
consensus_11849#1 TGCGGACAAGG-----------------------------------------------GG 613
*********** **
consensus_11849#0 TAGGGCCAGCGTGTACTACCGCTACATGGGGTCGCTCACCACGCCGCCTTGCACGCAGGG 720
consensus_11849#1 TAGGGCC--------------------------------------GCCTTGCACGCAGGG 635
******* ***************
consensus_11849#0 GGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCT 780
consensus_11849#1 GGTGGTCTGGACGATTGTCAAGAGGGTTCGCACCGTGTCGAGGTATCAGCTCGACCTTCT 695
************************************************************
consensus_11849#0 CAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAA 840
consensus_11849#1 CAGGGAAGCTGTGCATGATGAAATGGAGAACAACGCGAGGCCCCTTCAGGCGGTGAACAA 755
************************************************************
consensus_11849#0 CAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGCGGATTT 900
consensus_11849#1 CAGAGACATCTCCATTTTCCGGCCTTACCCTCATAAACGCTATTAATTAGCGGCGGATTT 815
************************************************************
consensus_11849#0 GTCGTCTGATGTGGATTGGTAGCCTAAAATAAATATACACATGCAGATAGGATCACACGT 960
consensus_11849#1 GTCGTCTGATGTGGATTGGTAGCCTAAAATAAATATACACATGCAGATAGGATCACACGT 875
************************************************************
consensus_11849#0 AGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGAC 1020
consensus_11849#1 AGGGCTCATTTTGCCGTTCGTTCGATCCTTCTATCACCCCTCCTTTTCTTTTGAGAGGAC 935
************************************************************
consensus_11849#0 TGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCT 1080
consensus_11849#1 TGATCTCTCACATTTCGATATATAGCTGAGATTTTTGTAATTCTTTCCATTACTGTTCCT 995
************************************************************
consensus_11849#0 GGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCATGCCATGTGTGTAGCATGTG 1140
consensus_11849#1 GGTTGATTGGATTGGAATAAAACACTGTTCATTAATTTCAAAAAAAAAAAA--------- 1046
**************************************** *
consensus_11849#0 TGTTGATGTGGAGAGATTTGATTATTGTGGCGTACTAACCGGGGACACAAACTAAGACCC 1200
consensus_11849#1 ------------------------------------------------------------
consensus_11849#0 TTCCAGCTGTGCTGTTTGTCTTCTTTGTATAAACCAAGAAAAGGTTGATGATAAAAAAAA 1260
consensus_11849#1 ------------------------------------------------------------
consensus_11849#0 AAA 1263
consensus_11849#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||